ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18m03 |
|---|---|
| Clone Library Name | barley_pub |
>EMB30_ARATH (Q42510) Pattern formation protein EMB30| Length = 1451 Score = 124 bits (312), Expect = 2e-28 Identities = 75/158 (47%), Positives = 96/158 (60%) Frame = -2 Query: 700 IVFQLLDELLEIAQNFSPKHFRNMEASLLHAVKXXXXXXXXXXXXXSAHSGFSKLWVEVL 521 ++F +LD+LLEIA S K +RNME +LL A+K S S F KLW+ VL Sbjct: 1295 VIFTVLDDLLEIAAG-SQKDYRNMEGTLLLAIKLLSKVFLQQLQELSQLSTFCKLWLGVL 1353 Query: 520 DMAEKLMKAKVRGGSRTERLQETATELLKNMLLVMKASGVLSRTSAGGESSLWEATWLHV 341 EK MK KVRG ++++LQE+ ELLKN+LLVMK GVL + SA G SLWE TWLHV Sbjct: 1354 TRMEKYMKVKVRG-KKSDKLQESVPELLKNILLVMKTKGVLLQRSALGGDSLWELTWLHV 1412 Query: 340 NKMAPSLQSVVFPDYDDAVQGAQSKLDIPAVSEGRLVP 227 N +APS++ +FPD + + G D VS G P Sbjct: 1413 NNIAPSMRLELFPDQESSQLG-----DDETVSNGLSSP 1445
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 65.5 bits (158), Expect = 2e-10 Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Frame = -2 Query: 700 IVFQLLDELLEIAQNFSPKHFRNMEASLLHAVKXXXXXXXXXXXXXSAHSGFSKLWVEVL 521 ++F LL +LLE N SP ME + + A + S F+ LW+ +L Sbjct: 1592 VLFPLLTKLLE---NISPADVGGMEETRMRASTLLSKVFLQHLSPLLSLSTFAALWLTIL 1648 Query: 520 DMAEKLMKAKVRGGSRTERLQETATELLKNMLLVMKASGVLSRTSA--GGESSLWEATWL 347 D +K M A ++ L E E LKNMLLVM + + A GG S+LWE TW Sbjct: 1649 DFMDKYMHA-----GSSDLLSEAIPESLKNMLLVMDTAEIFHSADARGGGPSALWEITWE 1703 Query: 346 HVNKMAPSLQSVVF 305 ++ P L+ +F Sbjct: 1704 RIDCFLPHLRDELF 1717
>GBF1_CRIGR (Q9R1D7) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1856 Score = 63.2 bits (152), Expect = 8e-10 Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 2/134 (1%) Frame = -2 Query: 700 IVFQLLDELLEIAQNFSPKHFRNMEASLLHAVKXXXXXXXXXXXXXSAHSGFSKLWVEVL 521 ++F LL +LLE N SP ME + + A + S F+ LW+ +L Sbjct: 1592 VLFPLLTKLLE---NISPADVGGMEETRMRASTLLSKVFLQHLSPLLSLSTFAALWLTIL 1648 Query: 520 DMAEKLMKAKVRGGSRTERLQETATELLKNMLLVMKASGVLSRTSA--GGESSLWEATWL 347 D +K M A ++ L E E LKNMLLVM + + A G S+LWE TW Sbjct: 1649 DFMDKYMHA-----GSSDLLSEAIPESLKNMLLVMDTAEIFHSADARGGSPSALWEITWE 1703 Query: 346 HVNKMAPSLQSVVF 305 ++ P L+ +F Sbjct: 1704 RIDCFLPHLRDELF 1717
>SNAT_CHICK (P79774) Serotonin N-acetyltransferase (EC 2.3.1.87) (Aralkylamine| N-acetyltransferase) (AA-NAT) (Serotonin acetylase) Length = 205 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -1 Query: 698 CLPVARRIVRDCAEFLAKAFQKHGSFPLACCKAVIQTI 585 CLP ARR V C +FL ++K G + C+ + T+ Sbjct: 147 CLPCARRAVLMCEDFLVPFYEKCGFVAVGPCQVTVGTL 184
>ILVD_THET2 (Q72JA8) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 555 Score = 32.0 bits (71), Expect = 1.9 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Frame = -1 Query: 689 VARRIVRDCAEFLAKAFQKHGSFPLACC-KAVIQTILAVTQRSF-GAQRFQ*AVGGGTGH 516 V+R ++ D E +A+ + G L+ C K + T + V + G + + G Sbjct: 92 VSREVIADSVELIAQGYLYDGMVGLSACDKTIPGTAMGVIRSGVPGMVLYGGTIAPGEWQ 151 Query: 515 GREAHESQSKRGQQD*EVARDCHRATQEHAAGDESERGLIEDERRR-------GEQFVGS 357 GR+ + A + AAG SE L+E ERR G Q+ + Sbjct: 152 GRKL-------------TIVEVFEAVGQRAAGKISEEELLEIERRAIPGPGACGGQYTAN 198 Query: 356 NMASR*QDGAFASVG--SFP*L**CSTRCTKQAG 261 MA + + VG + P + R TK+AG Sbjct: 199 TMAMALEALGLSPVGYNAIPAVHPEKERATKEAG 232
>ILVD_THET8 (Q5SIY0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 555 Score = 31.6 bits (70), Expect = 2.5 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Frame = -1 Query: 689 VARRIVRDCAEFLAKAFQKHGSFPLACC-KAVIQTILAVTQRSF-GAQRFQ*AVGGGTGH 516 V+R ++ D E +A+ + G L+ C K + T + V + G + + G Sbjct: 92 VSREVIADSVELIAQGYLYDGMVGLSACDKTIPGTAMGVIRSGVPGMILYGGTIAPGEWQ 151 Query: 515 GREAHESQSKRGQQD*EVARDCHRATQEHAAGDESERGLIEDERRR-------GEQFVGS 357 GR+ + A + AAG SE L+E ERR G Q+ + Sbjct: 152 GRKL-------------TIVEVFEAVGQRAAGKISEEELLEIERRAIPGPGACGGQYTAN 198 Query: 356 NMASR*QDGAFASVG--SFP*L**CSTRCTKQAG 261 MA + + VG + P + R TK+AG Sbjct: 199 TMAMALEALGLSPVGYNAIPAVHPEKERATKEAG 232
>Y364_MYCPN (P75417) Hypothetical protein MPN364 (H91_orf677)| Length = 677 Score = 30.0 bits (66), Expect = 7.3 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = -2 Query: 541 KLWVEVLDMAEKLMKAKVRGGSRTERLQETATELLKNMLLVMKASGVLSRTSAGGESSLW 362 +LW ++ AE KAK +G S+ + ++T T + L+ S S T+ G+++ Sbjct: 94 ELWEKIQKAAETNGKAKEQGKSKKQGTEKTTT-----LTLLKTESSQQSNTTKDGKATSD 148 Query: 361 EA---TWLHVNKMAPSLQSVVF 305 EA TW K+ L+ F Sbjct: 149 EAIKKTWGDYQKVENGLKGYTF 170
>IFN_ANAPL (P51526) Interferon precursor| Length = 191 Score = 30.0 bits (66), Expect = 7.3 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +2 Query: 350 PCCFPQTALXXXXXXXXXXXXFHHQQHVLE*LCGSLLQPLSPAAPSYFGFHELLCHVQY 526 PC FP T L H QH+ + +L P +PA + H+LL +Q+ Sbjct: 66 PCSFPDTLLDTNDTQQAAHTALHLLQHLFD----TLSSPSTPAHWLHTARHDLLNQLQH 120
>UBA3_PONPY (Q5R4A0) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 463 Score = 29.6 bits (65), Expect = 9.6 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = -2 Query: 379 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 260 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
>UBA3_HUMAN (Q8TBC4) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 463 Score = 29.6 bits (65), Expect = 9.6 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = -2 Query: 379 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 260 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
>UBA3_RAT (Q99MI7) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 462 Score = 29.6 bits (65), Expect = 9.6 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = -2 Query: 379 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 260 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
>UBA3_MOUSE (Q8C878) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 462 Score = 29.6 bits (65), Expect = 9.6 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = -2 Query: 379 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 260 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,759,523 Number of Sequences: 219361 Number of extensions: 1800416 Number of successful extensions: 4250 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4242 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7252940416 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
