ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18m03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465291.1| Oryza sativa (japonica cultivar-group), mRNA 167 6e-38
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
3dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
4dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
5ref|NM_165881.1| Drosophila melanogaster gartenzwerg CG8487-RA, ... 44 0.63
6ref|NM_136917.2| Drosophila melanogaster gartenzwerg CG8487-RB, ... 44 0.63
7gb|AY089287.1| Drosophila melanogaster AT08349 full insert cDNA 44 0.63
8gb|AC007476.5|AC007476 Drosophila melanogaster, chromosome 2R, r... 44 0.63
9gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, r... 44 0.63
10gb|AE003822.3| Drosophila melanogaster chromosome 2R, section 28... 44 0.63
11gb|AC159635.2| Mus musculus BAC clone RP24-111I3 from chromosome... 42 2.5
12gb|BC076569.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
13gb|BC059883.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
14gb|BC082336.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
15gb|BC060728.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
16gb|BC026621.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
17gb|BC034745.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
18gb|BC023791.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
19gb|BC024129.1| Mus musculus golgi-specific brefeldin A-resistanc... 42 2.5
20ref|NM_178930.3| Mus musculus golgi-specific brefeldin A-resista... 42 2.5
21gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, com... 42 2.5
22gb|AC159999.6| Mus musculus BAC clone RP23-6P9 from chromosome 1... 42 2.5
23gb|BC019206.1| Mus musculus strawberry notch homolog (Drosophila... 42 2.5
24dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, comp... 42 2.5
25dbj|AK172919.1| Mus musculus mRNA for mKIAA0248 protein 42 2.5
26gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, co... 42 2.5
27gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 9.8
28gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 9.8
29gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 9.8
30gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chrom... 40 9.8
31gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, co... 40 9.8
32emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chr... 40 9.8
33gb|AC107711.13| Mus musculus chromosome 14, clone RP23-291I12, c... 40 9.8
34gb|AC117245.3| Mus musculus BAC clone RP24-233B16 from 9, comple... 40 9.8
35gb|CP000001.1| Bacillus cereus E33L, complete genome 40 9.8
36gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence 40 9.8
37gb|AC183671.2| Pan troglodytes BAC clone CH251-545A14 from chrom... 40 9.8
38emb|AL355275.8| Human DNA sequence from clone RP11-416N18 on chr... 40 9.8
39emb|AL121918.26|HSJ342K12 Human DNA sequence from clone RP3-342K... 40 9.8
40emb|AL133322.13| Human DNA sequence from clone RP1-257L16 on chr... 40 9.8
41gb|AC164298.2| Mus musculus BAC clone RP23-347H20 from chromosom... 40 9.8
42gb|AC183774.2| Pan troglodytes BAC clone CH251-50B16 from chromo... 40 9.8
43gb|AC004401.3| Arabidopsis thaliana chromosome 2 clone F21P24 ma... 40 9.8
44gb|AC091915.4| Homo sapiens chromosome 5 clone RP11-224A9, compl... 40 9.8
45gb|AC025765.6| Homo sapiens chromosome 5 clone CTB-57H20, comple... 40 9.8
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
47gb|AC090532.1|AC090532 Homo sapiens chromosome 15 clone RP11-325... 40 9.8
48gb|AC009741.5|AC009741 Drosophila melanogaster, chromosome 3R, r... 40 9.8
49emb|BX294369.6| Zebrafish DNA sequence from clone CH211-223H7 in... 40 9.8
50gb|AC007724.4|AC007724 Drosophila melanogaster, chromosome 3R, r... 40 9.8
51dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
52gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell... 40 9.8
53gb|AC004998.2|AC004998 Homo sapiens PAC clone RP1-164D5 from Xq2... 40 9.8
54gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, compl... 40 9.8
55emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.8
56gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Canc... 40 9.8
57emb|AJ439553.1|PAN439553 Pichia angusta LTR-retrotransposon Tpa5 40 9.8
58gb|AE003695.2| Drosophila melanogaster chromosome 3R, section 33... 40 9.8
59emb|AL121769.4|CNS01DSD Human chromosome 14 DNA sequence BAC R-2... 40 9.8
60gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 ... 40 9.8
61gb|AC164120.2| Mus musculus BAC clone RP24-289J17 from chromosom... 40 9.8
62emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chr... 40 9.8
63gb|AC153910.6| Mus musculus 6 BAC RP23-337M7 (Roswell Park Cance... 40 9.8
64gb|AC136457.3| Mus musculus BAC clone RP23-76G19 from chromosome... 40 9.8
65emb|AL672270.12| Mouse DNA sequence from clone RP23-351A10 on ch... 40 9.8 
>ref|XM_465291.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4275

 Score =  167 bits (84), Expect = 6e-38
 Identities = 314/390 (80%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                        
Query: 324  gaaggcgccatcttgttaacgtgaagccatgttgcttcccacaaactgctctccccgccg 383
            ||||| || ||||||||||| ||||||||||||||||||||||||||| ||||  | | |
Sbjct: 4172 gaaggtgcaatcttgttaacttgaagccatgttgcttcccacaaactgttctcttcactg 4113

                                                                        
Query: 384  gcgctcgtcctcgataagaccccgctcgctttcatcaccagcagcatgttcttgagtagc 443
            | ||| ||| | ||||| ||||   | ||||| | ||||||||| |||||||| ||||||
Sbjct: 4112 gtgcttgtctttgataaaacccgatttgcttttagcaccagcagtatgttcttcagtagc 4053

                                                                        
Query: 444  tctgtggcagtctcttgcaacctctcagtcctgctgccccctcttactttggctttcatg 503
            |||| |  |  |||||| | | |||||||||| ||   |||||| |||||| ||||||| 
Sbjct: 4052 tctgggataacctcttgtagcttctcagtcctcct---ccctctcactttgactttcata 3996

                                                                        
Query: 504  agcttctctgccatgtccagtacctccacccacagcttactgaaaccgctgtgcgccgaa 563
            |||||||||  |||||| ||||| |||| ||||||||||||||| | ||| || |  |||
Sbjct: 3995 agcttctctatcatgtcaagtacttccaaccacagcttactgaagctgctctgtgatgaa 3936

                                                                        
Query: 564  agatcgttgagtgactgcaaggatagtttggataacagctttacagcatgcaagagggaa 623
            |  || || |||||||||||| | | |||| |||  || |||||||||||||||||||| 
Sbjct: 3935 atgtcattaagtgactgcaagaacactttgcatagaagttttacagcatgcaagagggac 3876

                                                                        
Query: 624  gcttccatgtttctgaaatgctttggcgagaaattctgcgcaatctctaacaattcgtcg 683
             | |||||||||||||||| ||| || ||| |||| || |||||||| |  ||||| || 
Sbjct: 3875 acctccatgtttctgaaatccttcggtgagtaattttgtgcaatctccagtaattcatca 3816

                                          
Query: 684  agcaactggaagacaatgtcgaatgacatc 713
            ||||||||||| | ||| || |||||||||
Sbjct: 3815 agcaactggaaaataatatcaaatgacatc 3786
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  167 bits (84), Expect = 6e-38
 Identities = 314/390 (80%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                            
Query: 324      gaaggcgccatcttgttaacgtgaagccatgttgcttcccacaaactgctctccccgccg 383
                ||||| || ||||||||||| ||||||||||||||||||||||||||| ||||  | | |
Sbjct: 13148560 gaaggtgcaatcttgttaacttgaagccatgttgcttcccacaaactgttctcttcactg 13148501

                                                                            
Query: 384      gcgctcgtcctcgataagaccccgctcgctttcatcaccagcagcatgttcttgagtagc 443
                | ||| ||| | ||||| ||||   | ||||| | ||||||||| |||||||| ||||||
Sbjct: 13148500 gtgcttgtctttgataaaacccgatttgcttttagcaccagcagtatgttcttcagtagc 13148441

                                                                            
Query: 444      tctgtggcagtctcttgcaacctctcagtcctgctgccccctcttactttggctttcatg 503
                |||| |  |  |||||| | | |||||||||| ||   |||||| |||||| ||||||| 
Sbjct: 13148440 tctgggataacctcttgtagcttctcagtcctcct---ccctctcactttgactttcata 13148384

                                                                            
Query: 504      agcttctctgccatgtccagtacctccacccacagcttactgaaaccgctgtgcgccgaa 563
                |||||||||  |||||| ||||| |||| ||||||||||||||| | ||| || |  |||
Sbjct: 13148383 agcttctctatcatgtcaagtacttccaaccacagcttactgaagctgctctgtgatgaa 13148324

                                                                            
Query: 564      agatcgttgagtgactgcaaggatagtttggataacagctttacagcatgcaagagggaa 623
                |  || || |||||||||||| | | |||| |||  || |||||||||||||||||||| 
Sbjct: 13148323 atgtcattaagtgactgcaagaacactttgcatagaagttttacagcatgcaagagggac 13148264

                                                                            
Query: 624      gcttccatgtttctgaaatgctttggcgagaaattctgcgcaatctctaacaattcgtcg 683
                 | |||||||||||||||| ||| || ||| |||| || |||||||| |  ||||| || 
Sbjct: 13148263 acctccatgtttctgaaatccttcggtgagtaattttgtgcaatctccagtaattcatca 13148204

                                              
Query: 684      agcaactggaagacaatgtcgaatgacatc 713
                ||||||||||| | ||| || |||||||||
Sbjct: 13148203 agcaactggaaaataatatcaaatgacatc 13148174
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>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0042G06
          Length = 123571

 Score =  167 bits (84), Expect = 6e-38
 Identities = 314/390 (80%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                         
Query: 324   gaaggcgccatcttgttaacgtgaagccatgttgcttcccacaaactgctctccccgccg 383
             ||||| || ||||||||||| ||||||||||||||||||||||||||| ||||  | | |
Sbjct: 18590 gaaggtgcaatcttgttaacttgaagccatgttgcttcccacaaactgttctcttcactg 18531

                                                                         
Query: 384   gcgctcgtcctcgataagaccccgctcgctttcatcaccagcagcatgttcttgagtagc 443
             | ||| ||| | ||||| ||||   | ||||| | ||||||||| |||||||| ||||||
Sbjct: 18530 gtgcttgtctttgataaaacccgatttgcttttagcaccagcagtatgttcttcagtagc 18471

                                                                         
Query: 444   tctgtggcagtctcttgcaacctctcagtcctgctgccccctcttactttggctttcatg 503
             |||| |  |  |||||| | | |||||||||| ||   |||||| |||||| ||||||| 
Sbjct: 18470 tctgggataacctcttgtagcttctcagtcctcct---ccctctcactttgactttcata 18414

                                                                         
Query: 504   agcttctctgccatgtccagtacctccacccacagcttactgaaaccgctgtgcgccgaa 563
             |||||||||  |||||| ||||| |||| ||||||||||||||| | ||| || |  |||
Sbjct: 18413 agcttctctatcatgtcaagtacttccaaccacagcttactgaagctgctctgtgatgaa 18354

                                                                         
Query: 564   agatcgttgagtgactgcaaggatagtttggataacagctttacagcatgcaagagggaa 623
             |  || || |||||||||||| | | |||| |||  || |||||||||||||||||||| 
Sbjct: 18353 atgtcattaagtgactgcaagaacactttgcatagaagttttacagcatgcaagagggac 18294

                                                                         
Query: 624   gcttccatgtttctgaaatgctttggcgagaaattctgcgcaatctctaacaattcgtcg 683
              | |||||||||||||||| ||| || ||| |||| || |||||||| |  ||||| || 
Sbjct: 18293 acctccatgtttctgaaatccttcggtgagtaattttgtgcaatctccagtaattcatca 18234

                                           
Query: 684   agcaactggaagacaatgtcgaatgacatc 713
             ||||||||||| | ||| || |||||||||
Sbjct: 18233 agcaactggaaaataatatcaaatgacatc 18204
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476C12
          Length = 157570

 Score =  167 bits (84), Expect = 6e-38
 Identities = 314/390 (80%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                          
Query: 324    gaaggcgccatcttgttaacgtgaagccatgttgcttcccacaaactgctctccccgccg 383
              ||||| || ||||||||||| ||||||||||||||||||||||||||| ||||  | | |
Sbjct: 125137 gaaggtgcaatcttgttaacttgaagccatgttgcttcccacaaactgttctcttcactg 125078

                                                                          
Query: 384    gcgctcgtcctcgataagaccccgctcgctttcatcaccagcagcatgttcttgagtagc 443
              | ||| ||| | ||||| ||||   | ||||| | ||||||||| |||||||| ||||||
Sbjct: 125077 gtgcttgtctttgataaaacccgatttgcttttagcaccagcagtatgttcttcagtagc 125018

                                                                          
Query: 444    tctgtggcagtctcttgcaacctctcagtcctgctgccccctcttactttggctttcatg 503
              |||| |  |  |||||| | | |||||||||| ||   |||||| |||||| ||||||| 
Sbjct: 125017 tctgggataacctcttgtagcttctcagtcctcct---ccctctcactttgactttcata 124961

                                                                          
Query: 504    agcttctctgccatgtccagtacctccacccacagcttactgaaaccgctgtgcgccgaa 563
              |||||||||  |||||| ||||| |||| ||||||||||||||| | ||| || |  |||
Sbjct: 124960 agcttctctatcatgtcaagtacttccaaccacagcttactgaagctgctctgtgatgaa 124901

                                                                          
Query: 564    agatcgttgagtgactgcaaggatagtttggataacagctttacagcatgcaagagggaa 623
              |  || || |||||||||||| | | |||| |||  || |||||||||||||||||||| 
Sbjct: 124900 atgtcattaagtgactgcaagaacactttgcatagaagttttacagcatgcaagagggac 124841

                                                                          
Query: 624    gcttccatgtttctgaaatgctttggcgagaaattctgcgcaatctctaacaattcgtcg 683
               | |||||||||||||||| ||| || ||| |||| || |||||||| |  ||||| || 
Sbjct: 124840 acctccatgtttctgaaatccttcggtgagtaattttgtgcaatctccagtaattcatca 124781

                                            
Query: 684    agcaactggaagacaatgtcgaatgacatc 713
              ||||||||||| | ||| || |||||||||
Sbjct: 124780 agcaactggaaaataatatcaaatgacatc 124751
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>ref|NM_165881.1| Drosophila melanogaster gartenzwerg CG8487-RA, transcript variant A
            (garz), mRNA
          Length = 5317

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 416  catcaccagcagcatgttcttgagta 441
            ||||||||||||||||||||| ||||
Sbjct: 4875 catcaccagcagcatgttcttcagta 4850
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>ref|NM_136917.2| Drosophila melanogaster gartenzwerg CG8487-RB, transcript variant B
            (garz), mRNA
          Length = 6278

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 416  catcaccagcagcatgttcttgagta 441
            ||||||||||||||||||||| ||||
Sbjct: 4875 catcaccagcagcatgttcttcagta 4850
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>gb|AY089287.1| Drosophila melanogaster AT08349 full insert cDNA
          Length = 2313

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 416  catcaccagcagcatgttcttgagta 441
            ||||||||||||||||||||| ||||
Sbjct: 1834 catcaccagcagcatgttcttcagta 1809
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>gb|AC007476.5|AC007476 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
             BACR37P06, complete sequence
          Length = 171705

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 416   catcaccagcagcatgttcttgagta 441
             ||||||||||||||||||||| ||||
Sbjct: 20281 catcaccagcagcatgttcttcagta 20256
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>gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
              BACR37I09, complete sequence
          Length = 184621

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 416    catcaccagcagcatgttcttgagta 441
              ||||||||||||||||||||| ||||
Sbjct: 174916 catcaccagcagcatgttcttcagta 174891
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>gb|AE003822.3| Drosophila melanogaster chromosome 2R, section 28 of 73 of the complete
             sequence
          Length = 233148

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 416   catcaccagcagcatgttcttgagta 441
             ||||||||||||||||||||| ||||
Sbjct: 43407 catcaccagcagcatgttcttcagta 43382
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>gb|AC159635.2| Mus musculus BAC clone RP24-111I3 from chromosome 12, complete sequence
          Length = 168623

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 111   tccaagttatttataacaaaaagta 135
             ||||||||||||||| |||||||||
Sbjct: 32159 tccaagttatttataccaaaaagta 32183
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>gb|BC076569.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone MGC:100238 IMAGE:6409170), complete cds
          Length = 6422

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 5285 catcaccagcagcatgttctt 5265
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>gb|BC059883.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone IMAGE:6815625), complete cds
          Length = 3082

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 1950 catcaccagcagcatgttctt 1930
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>gb|BC082336.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone MGC:90745 IMAGE:30536866), complete cds
          Length = 6422

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 5280 catcaccagcagcatgttctt 5260
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>gb|BC060728.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone IMAGE:6406946), containing frame-shift errors
          Length = 5849

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 4693 catcaccagcagcatgttctt 4673
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>gb|BC026621.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone IMAGE:4981388), partial cds
          Length = 2440

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 1305 catcaccagcagcatgttctt 1285
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>gb|BC034745.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone IMAGE:4952709), containing frame-shift errors
          Length = 4179

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 3050 catcaccagcagcatgttctt 3030
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>gb|BC023791.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone IMAGE:5352103)
          Length = 2822

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 1691 catcaccagcagcatgttctt 1671
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>gb|BC024129.1| Mus musculus golgi-specific brefeldin A-resistance factor 1, mRNA
            (cDNA clone IMAGE:5100957), containing frame-shift errors
          Length = 4069

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 2943 catcaccagcagcatgttctt 2923
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>ref|NM_178930.3| Mus musculus golgi-specific brefeldin A-resistance factor 1 (Gbf1),
            mRNA
          Length = 6422

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 5285 catcaccagcagcatgttctt 5265
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>gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, complete sequence
          Length = 249767

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 416   catcaccagcagcatgttctt 436
             |||||||||||||||||||||
Sbjct: 53958 catcaccagcagcatgttctt 53938
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>gb|AC159999.6| Mus musculus BAC clone RP23-6P9 from chromosome 10, complete sequence
          Length = 216489

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 248   aactgctgggatatccagctt 268
             |||||||||||||||||||||
Sbjct: 81793 aactgctgggatatccagctt 81813
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>gb|BC019206.1| Mus musculus strawberry notch homolog (Drosophila), mRNA (cDNA clone
            IMAGE:5052084), with apparent retained intron
          Length = 2658

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 248  aactgctgggatatccagctt 268
            |||||||||||||||||||||
Sbjct: 1249 aactgctgggatatccagctt 1229
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>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence
          Length = 271577

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 672    aacaattcgtcgagcaactgg 692
              |||||||||||||||||||||
Sbjct: 197488 aacaattcgtcgagcaactgg 197468
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>dbj|AK172919.1| Mus musculus mRNA for mKIAA0248 protein
          Length = 5981

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  catcaccagcagcatgttctt 436
            |||||||||||||||||||||
Sbjct: 4866 catcaccagcagcatgttctt 4846
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>gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, complete sequence
          Length = 180605

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 630   atgtttctgaaatgctttggc 650
             |||||||||||||||||||||
Sbjct: 98447 atgtttctgaaatgctttggc 98427
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    tcatcaccagcagcatgttc 434
              ||||||||||||||||||||
Sbjct: 265311 tcatcaccagcagcatgttc 265292
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   aaaactaccgactgaagcga 325
             ||||||||||||||||||||
Sbjct: 16323 aaaactaccgactgaagcga 16304
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    tacataattatatccagtag 206
              ||||||||||||||||||||
Sbjct: 214884 tacataattatatccagtag 214903
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>gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chromosome 6, complete
              sequence
          Length = 166671

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    agttatttataacaaaaagt 134
              ||||||||||||||||||||
Sbjct: 128546 agttatttataacaaaaagt 128565
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>gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, complete sequence
          Length = 235471

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ccagcttgctttgtgcacct 281
             ||||||||||||||||||||
Sbjct: 19098 ccagcttgctttgtgcacct 19079
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>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete
            sequence
          Length = 212903

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  cagtttgttcatctaaactg 228
            ||||||||||||||||||||
Sbjct: 7002 cagtttgttcatctaaactg 7021
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>gb|AC107711.13| Mus musculus chromosome 14, clone RP23-291I12, complete sequence
          Length = 228302

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    tgcaacctctcagtcctgct 478
              ||||||||||||||||||||
Sbjct: 227764 tgcaacctctcagtcctgct 227783
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>gb|AC117245.3| Mus musculus BAC clone RP24-233B16 from 9, complete sequence
          Length = 177775

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    ccagcttgctttgtgcacct 281
              ||||||||||||||||||||
Sbjct: 135851 ccagcttgctttgtgcacct 135832
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 61      ctcacattttactcaaacttgaccatggattt 92
               |||| ||||||| |||||||||||||| ||||
Sbjct: 2459944 ctcatattttacacaaacttgaccatgaattt 2459913
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>gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence
          Length = 259603

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   cagtttgttcatctaaactg 228
             ||||||||||||||||||||
Sbjct: 32662 cagtttgttcatctaaactg 32643
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>gb|AC183671.2| Pan troglodytes BAC clone CH251-545A14 from chromosome 6, complete
              sequence
          Length = 222567

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    agttatttataacaaaaagt 134
              ||||||||||||||||||||
Sbjct: 192176 agttatttataacaaaaagt 192157
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>emb|AL355275.8| Human DNA sequence from clone RP11-416N18 on chromosome 10 Contains
             part of a novel gene, complete sequence
          Length = 94410

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   cctcttactttggctttcat 502
             ||||||||||||||||||||
Sbjct: 40662 cctcttactttggctttcat 40643
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>emb|AL121918.26|HSJ342K12 Human DNA sequence from clone RP3-342K12 on chromosome 20 Contains the
             MTCO2L gene for cytochrome c oxidase subunit II-like
             (pseudogene), part of a novel gene (LOC284757) and a CpG
             island, complete sequence
          Length = 113754

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   tttcatgagcttctctgcca 516
             ||||||||||||||||||||
Sbjct: 82017 tttcatgagcttctctgcca 82036
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>emb|AL133322.13| Human DNA sequence from clone RP1-257L16 on chromosome 6q12-13, complete
              sequence
          Length = 172624

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    agttatttataacaaaaagt 134
              ||||||||||||||||||||
Sbjct: 102648 agttatttataacaaaaagt 102629
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>gb|AC164298.2| Mus musculus BAC clone RP23-347H20 from chromosome 14, complete sequence
          Length = 203395

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gctgggatatccagcttgct 271
              ||||||||||||||||||||
Sbjct: 115203 gctgggatatccagcttgct 115222
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>gb|AC183774.2| Pan troglodytes BAC clone CH251-50B16 from chromosome 6, complete
             sequence
          Length = 169226

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   agttatttataacaaaaagt 134
             ||||||||||||||||||||
Sbjct: 24757 agttatttataacaaaaagt 24776
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>gb|AC004401.3| Arabidopsis thaliana chromosome 2 clone F21P24 map CIC06C07, complete
             sequence
          Length = 94038

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 673   acaattcgtcgagcaactgg 692
             ||||||||||||||||||||
Sbjct: 41219 acaattcgtcgagcaactgg 41238
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>gb|AC091915.4| Homo sapiens chromosome 5 clone RP11-224A9, complete sequence
          Length = 150965

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ataacaaaaagtatactggt 142
              ||||||||||||||||||||
Sbjct: 149183 ataacaaaaagtatactggt 149164
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>gb|AC025765.6| Homo sapiens chromosome 5 clone CTB-57H20, complete sequence
          Length = 218515

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 418   tcaccagcagcatgttcttgagta 441
             ||||||||||||||| ||||||||
Sbjct: 25141 tcaccagcagcatgtccttgagta 25164
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 590      tttggataacagctttacag 609
                ||||||||||||||||||||
Sbjct: 20312889 tttggataacagctttacag 20312908
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>gb|AC090532.1|AC090532 Homo sapiens chromosome 15 clone RP11-325L11 map 15q21.3, complete
              sequence
          Length = 168862

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ataacaaaaagtatactggt 142
              ||||||||||||||||||||
Sbjct: 102429 ataacaaaaagtatactggt 102410
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>gb|AC009741.5|AC009741 Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone
             BACR44K17, complete sequence
          Length = 166863

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 682   cgagcaactggaagacaatg 701
             ||||||||||||||||||||
Sbjct: 13323 cgagcaactggaagacaatg 13304
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>emb|BX294369.6| Zebrafish DNA sequence from clone CH211-223H7 in linkage group 17,
             complete sequence
          Length = 111212

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    atgaaattgatctgtatcag 31
             ||||||||||||||||||||
Sbjct: 22696 atgaaattgatctgtatcag 22677
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>gb|AC007724.4|AC007724 Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone
              BACR30N15, complete sequence
          Length = 178199

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 682    cgagcaactggaagacaatg 701
              ||||||||||||||||||||
Sbjct: 104835 cgagcaactggaagacaatg 104816
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>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0026J14
          Length = 163496

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   tttggataacagctttacag 609
             ||||||||||||||||||||
Sbjct: 78922 tttggataacagctttacag 78941
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>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185405

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 112   ccaagttatttataacaaaaagtatact 139
             |||| ||||||||| |||||||||||||
Sbjct: 83383 ccaatttatttataccaaaaagtatact 83356
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>gb|AC004998.2|AC004998 Homo sapiens PAC clone RP1-164D5 from Xq23, complete sequence
          Length = 135572

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   cagcttactgaaaccgctgt 555
             ||||||||||||||||||||
Sbjct: 50915 cagcttactgaaaccgctgt 50896
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>gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, complete sequence
          Length = 181941

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    atgttgcttcccacaaactg 371
              ||||||||||||||||||||
Sbjct: 153945 atgttgcttcccacaaactg 153964
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 419     caccagcagcatgttcttga 438
               ||||||||||||||||||||
Sbjct: 4909454 caccagcagcatgttcttga 4909473
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>gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221335

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    aaatcatctgcttctaacta 175
              ||||||||||||||||||||
Sbjct: 177246 aaatcatctgcttctaacta 177227
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>emb|AJ439553.1|PAN439553 Pichia angusta LTR-retrotransposon Tpa5
          Length = 4883

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 622 aagcttccatgtttctgaaa 641
           ||||||||||||||||||||
Sbjct: 383 aagcttccatgtttctgaaa 364
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>gb|AE003695.2| Drosophila melanogaster chromosome 3R, section 33 of 118 of the
             complete sequence
          Length = 225655

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 682   cgagcaactggaagacaatg 701
             ||||||||||||||||||||
Sbjct: 44618 cgagcaactggaagacaatg 44599
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>emb|AL121769.4|CNS01DSD Human chromosome 14 DNA sequence BAC R-299L17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167344

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ggatatccagcttgctttgt 275
              ||||||||||||||||||||
Sbjct: 155378 ggatatccagcttgctttgt 155359
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>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete
              sequence
          Length = 299633

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 112    ccaagttatttataacaaaaagtatact 139
              |||| ||||||||| |||||||||||||
Sbjct: 200428 ccaatttatttataccaaaaagtatact 200401
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>gb|AC164120.2| Mus musculus BAC clone RP24-289J17 from chromosome 14, complete
             sequence
          Length = 147050

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tgcaacctctcagtcctgct 478
             ||||||||||||||||||||
Sbjct: 20375 tgcaacctctcagtcctgct 20394
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>emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chromosome 14, complete
              sequence
          Length = 217241

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    atgttgcttcccacaaactg 371
              ||||||||||||||||||||
Sbjct: 108900 atgttgcttcccacaaactg 108881
to top
>gb|AC153910.6| Mus musculus 6 BAC RP23-337M7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 214838

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   aaatcatctgcttctaacta 175
             ||||||||||||||||||||
Sbjct: 19316 aaatcatctgcttctaacta 19297
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>gb|AC136457.3| Mus musculus BAC clone RP23-76G19 from chromosome 13, complete sequence
          Length = 204369

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tatttataacaaaaagtata 137
              ||||||||||||||||||||
Sbjct: 133948 tatttataacaaaaagtata 133967
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>emb|AL672270.12| Mouse DNA sequence from clone RP23-351A10 on chromosome X, complete
              sequence
          Length = 220691

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    aaatcatctgcttctaacta 175
              ||||||||||||||||||||
Sbjct: 150963 aaatcatctgcttctaacta 150944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,284,266
Number of Sequences: 3902068
Number of extensions: 6284266
Number of successful extensions: 132498
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132171
Number of HSP's gapped (non-prelim): 323
length of query: 713
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 690
effective length of database: 17,143,297,704
effective search space: 11828875415760
effective search space used: 11828875415760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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