>TOP1_SCHPO (P07799) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 814

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = -3

Query: 510 TKQRLKWERFRMKKDREIERLALENEQKMFQHKHLEIQLR-----DKELELELK 364
           T   L+ E+ + K DRE E+LA E+ + +     LE++L+      K L+ ELK
Sbjct: 670 TLYELEKEKIKKKFDRENEKLAAEDPKSVLPESELEVRLKAADELKKALDAELK 723

>ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to vacuole|
           targeting protein 7)
          Length = 997

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 191 KGCYNNDGQSEDH*TKYNASNRS*GFFLDQPYSWQKHLRPYCKPKL*SINYHA 349
           KG  NN+G S                FL+  YSW+K  +P  KP+L  I  HA
Sbjct: 855 KGYPNNEGDS----------------FLNNKYSWRKQFQPGQKPELFRIGKHA 891

>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 474 KKDREIERLALENEQKMFQHKHLEIQLRDKELELE-LKGNANH 349
           K  R +E+L  E+ + +    HLE +L D E+EL+  K  A+H
Sbjct: 566 KLKRSLEKLQEESNKSIADMTHLETKLNDTEIELKHFKQKASH 608

>SWI1_YEAST (P09547) Transcription regulatory protein SWI1 (SWI/SNF complex|
           component SWI1) (Transcription regulatory protein ADR6)
           (Regulatory protein GAM3)
          Length = 1314

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = -3

Query: 513 VTKQRLKWERFRMKKDREIERLALENEQKMFQHKHLEIQLRDKELELELK 364
           V K R +  + + KK+ E+ER   E+ QK  Q K LE Q R ++L LE K
Sbjct: 592 VKKPRKQRVKKKTKKELELERKEREDFQKR-QQKLLEDQQRQQKLLLETK 640

>ALMS1_HUMAN (Q8TCU4) Alstrom syndrome protein 1|
          Length = 4167

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +3

Query: 165 PEQTKPRSTKDVTTTTANQKITKPSIMHQIGLEGSFLINHTLGKNTFDHIANQNSDQSTI 344
           PE    ++      ++++    KPSI +Q GL  S L    L  +    +A+Q +  ST+
Sbjct: 557 PEPADQKTATPTVLSSSHSHRGKPSIFYQQGLPDSHLTEEALKVSAAPGLADQTTGMSTL 616

>TATB_XANAC (Q8PEX3) Sec-independent protein translocase protein tatB homolog|
          Length = 208

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 513 VTKQRLKWERFRMKKDREIERLALENEQKMFQH--KHLEIQLRDKELELELKGNANH 349
           V + R++W+  + + +RE+E   L+   +  Q   +  E QLR+K+ ++E    A H
Sbjct: 36  VRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNKQQQVEQGARALH 92

>HFW2_DROME (Q8SXT3) Protein singed wings 2 precursor|
          Length = 499

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 113 QMGELVHYRLVLEVWSEGHPAQRGCRCNSVHMLP 12
           QM  ++HY+L L+   + H   R C C   H+LP
Sbjct: 248 QMLMVMHYKLELKRQCQSHEDLRNCTCLMHHILP 281

>TATB_XYLFA (Q9PFU4) Sec-independent protein translocase protein tatB homolog|
          Length = 140

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 513 VTKQRLKWERFRMKKDREIERLA----LENEQKMFQHKHLEIQLRDKELELE 370
           V + R +WE  + + +RE+E  A    LEN Q++      ++Q   +++ ++
Sbjct: 36  VRRARTQWESIKQELERELEAEALKRNLENAQQVIHDAQAQLQSNQQDMNIQ 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,959,951
Number of Sequences: 219361
Number of extensions: 1193630
Number of successful extensions: 3372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3370
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)