ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18l23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (... 47 5e-05
2SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (... 45 3e-04
3ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kel... 33 0.99
4ADO2_ARATH (Q8W420) Adagio protein 2 (LOV kelch protein 2) (Flav... 32 1.3
5NMCP_ARATH (Q9FLH0) Putative nuclear matrix constituent protein ... 31 3.7
6ATPE_RICPR (Q9ZCF3) ATP synthase epsilon chain (EC 3.6.3.14) (AT... 30 4.9

>SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (SPL1-related|
            protein 3)
          Length = 988

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 27/66 (40%), Positives = 32/66 (48%)
 Frame = -2

Query: 634  RSCSQCAILESGLLRRPMRSRGLLARPYIHSMLAIAAXXXXXXVFMRALLRFNSGRTFKW 455
            RSC+ CA +     R+   SR L   P IHSMLA+A       VFM A      G  F W
Sbjct: 921  RSCNTCASVALKYQRKVSGSRRLFPTPIIHSMLAVATVCVCVCVFMHAFPMVRQGSHFSW 980

Query: 454  ERLDFG 437
              LD+G
Sbjct: 981  GGLDYG 986



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>SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (SPL1-related|
            protein 2)
          Length = 1035

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 26/65 (40%), Positives = 31/65 (47%)
 Frame = -2

Query: 631  SCSQCAILESGLLRRPMRSRGLLARPYIHSMLAIAAXXXXXXVFMRALLRFNSGRTFKWE 452
            SC+ CA +     RR   S+ L   P IHSMLA+A       VFM A      G  F W 
Sbjct: 969  SCASCATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWG 1028

Query: 451  RLDFG 437
             LD+G
Sbjct: 1029 GLDYG 1033



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>ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kelch protein 1)|
           (Flavin-binding kelch repeat F-box protein 1-like
           protein 2) (FKF1-like protein 2) (F-box only protein 2b)
           (FBX2b) (Clock-associated PAS protein ZTL)
          Length = 609

 Score = 32.7 bits (73), Expect = 0.99
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 185 AKRKTWAELAHSFVMREEAT-RALSMSGAIRQRQQ*FCG*SVSNPLFLFAGVSVNL 21
           AKR  W  LA      E A  R LS+ G++   +  F   +V N + LF G  VN+
Sbjct: 260 AKRLGWGRLARELTTLEAAAWRKLSVGGSVEPSRCNFSACAVGNRVVLFGGEGVNM 315



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>ADO2_ARATH (Q8W420) Adagio protein 2 (LOV kelch protein 2) (Flavin-binding|
           kelch repeat F-box protein 1-like protein 1) (FKF1-like
           protein 1) (F-box only protein 2c) (FBX2c)
          Length = 611

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 185 AKRKTWAELAHSFVMREE-ATRALSMSGAIRQRQQ*FCG*SVSNPLFLFAGVSVNL 21
           AKR  W  LA  F   E  A R  S+ G +   +  F   +V N + +F G  VN+
Sbjct: 261 AKRIGWVRLAREFTTHEATAWRKFSVGGTVEPSRCNFSACAVGNRIVIFGGEGVNM 316



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>NMCP_ARATH (Q9FLH0) Putative nuclear matrix constituent protein 1-like protein|
           (NMCP1-like)
          Length = 1042

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 310 PWLWMVKCNSCMDKTLPEESVGMWG*SSASKGRVENQEKGGLPKEKL 170
           P+ W+ +C + + KT PE+S  M             +E+GG+P EKL
Sbjct: 842 PFSWIKRCTNLIFKTSPEKSTLMH----------HYEEEGGVPSEKL 878



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>ATPE_RICPR (Q9ZCF3) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1|
           sector epsilon subunit)
          Length = 112

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +3

Query: 240 HIPTLSSGKVLSMQLLHFTIHNHGQNSMESGAVKSNLVPHPLVLVR*FLNNITQLSNTAF 419
           H+P + + K   +Q+  + IHN+    + SG V + +  H + +V     N+T LS +  
Sbjct: 39  HVPMIVNLKAGLVQIYIYNIHNYENTYLISGGV-TEITSHYINIVTEVAINVTNLSESEI 97

Query: 420 SNV*VGPKSNLSH 458
           S      +  LSH
Sbjct: 98  STQRYELQKLLSH 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,352,963
Number of Sequences: 219361
Number of extensions: 2219450
Number of successful extensions: 4692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4692
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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