ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UCHL5_BOVIN (Q9XSJ0) Ubiquitin carboxyl-terminal hydrolase isozy... 55 1e-07
2UCHL5_MOUSE (Q9WUP7) Ubiquitin carboxyl-terminal hydrolase isozy... 55 1e-07
3UCHL5_HUMAN (Q9Y5K5) Ubiquitin carboxyl-terminal hydrolase isozy... 55 1e-07
4UBH4_CAEEL (Q09444) Probable ubiquitin carboxyl-terminal hydrola... 38 0.020
5SCG1_MOUSE (P16014) Secretogranin-1 precursor (Secretogranin I) ... 29 9.1

>UCHL5_BOVIN (Q9XSJ0) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC|
           3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5)
           (Ubiquitin C-terminal hydrolase UCH37)
          Length = 328

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = -1

Query: 375 ENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQNSHGR 256
           ENIRRKHNY+PF+   LK L E QQL PL+EKAK+  + +
Sbjct: 283 ENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAK 322



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>UCHL5_MOUSE (Q9WUP7) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC|
           3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5)
           (Ubiquitin C-terminal hydrolase UCH37)
          Length = 329

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = -1

Query: 375 ENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQNSHGR 256
           ENIRRKHNY+PF+   LK L E QQL PL+EKAK+  + +
Sbjct: 284 ENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAK 323



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>UCHL5_HUMAN (Q9Y5K5) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC|
           3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5)
           (Ubiquitin C-terminal hydrolase UCH37)
          Length = 329

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = -1

Query: 375 ENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQNSHGR 256
           ENIRRKHNY+PF+   LK L E QQL PL+EKAK+  + +
Sbjct: 284 ENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAK 323



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>UBH4_CAEEL (Q09444) Probable ubiquitin carboxyl-terminal hydrolase ubh-4 (EC|
           3.4.19.12) (Ubiquitin C-terminal hydrolase family 1
           member 4) (Ubiquitin thioesterase 4)
          Length = 321

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -1

Query: 375 ENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQ 271
           EN RR+HNY PF+   +KIL ++ +L  L++ A Q
Sbjct: 266 ENNRRRHNYTPFVIELMKILAKEGKLVGLVDNAYQ 300



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>SCG1_MOUSE (P16014) Secretogranin-1 precursor (Secretogranin I) (SgI)|
           (Chromogranin B) (CgB)
          Length = 677

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 418 EDHNGGREGKEVEDGEHQEEAQLRAFLVQFPQDPRGEAATEAPDREGE--TEFSRP*P 251
           E+   G EG+E E+GE  EE        + P+   G + +     EG   +E  RP P
Sbjct: 258 EESQEGEEGEEGEEGEEGEEDSASEVTKRRPRHHHGRSGSNKSSYEGHPLSEERRPSP 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,870,653
Number of Sequences: 219361
Number of extensions: 1019345
Number of successful extensions: 2821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2814
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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