ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18l21 |
|---|---|
| Clone Library Name | barley_pub |
>RP8L3_ARATH (Q9FJB5) Probable disease resistance RPP8-like protein 3| Length = 901 Score = 46.2 bits (108), Expect = 9e-05 Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Frame = -3 Query: 622 KTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSLLKLDKVPQGIEFXXX 443 + +V SK FP L+ L + ++ E + +G++PC+ L I S KL+++P G+++ Sbjct: 800 RRMVCSKGGFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKY--- 856 Query: 442 XXXXXXXXXXKDFRTQWDTKGM---HQKILHVPEVR 344 + + +W K + + K+ H+P+V+ Sbjct: 857 -VTSLKELKIEGMKREWKEKLVGEDYYKVQHIPDVQ 891
>RP8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like protein 2| Length = 1271 Score = 40.4 bits (93), Expect = 0.005 Identities = 17/57 (29%), Positives = 35/57 (61%) Frame = -3 Query: 622 KTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSLLKLDKVPQGIEF 452 + +V SK FP L L + + ++ E ++ +G++PC+ L I + KL ++P G+++ Sbjct: 807 RRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGLKY 863
>RPP8_ARATH (Q8W4J9) Disease resistance protein RPP8 (Resistance to Peronospora| parasitica protein 8) Length = 908 Score = 39.3 bits (90), Expect = 0.011 Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Frame = -3 Query: 616 LVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSLLKLDKVPQGIEFXXXXX 437 +V SK FP L + + ++ E + +G++PC+ L I KL ++P G+++ Sbjct: 811 MVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLK 870 Query: 436 XXXXXXXXKDFRTQWDTKGM-HQKILHVPEVR 344 ++++ + G + K+ H+P+V+ Sbjct: 871 ELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQ 902
>RP8HA_ARATH (P59584) Disease resistance protein RPH8A (RPP8 homolog A)| Length = 910 Score = 39.3 bits (90), Expect = 0.011 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 10/124 (8%) Frame = -3 Query: 685 GMMAXHMPNLTYLRLNNMHSV---------KTLVLSKDSFPNLKTLVLRHMHDVSELKII 533 GM MP L +L+++ SV + +V SKD F L L + ++ + + Sbjct: 783 GMEEDPMPILE--KLHHLKSVQLRYKAFVGRRMVCSKDGFTQLCALDISKQSELEDWIVE 840 Query: 532 DGALPCIDGLYIVSLLKLDKVPQGIEFXXXXXXXXXXXXXKDFRTQWDTKGM-HQKILHV 356 +G++PC+ L I KL ++P G+++ ++++ + G + K+ H+ Sbjct: 841 EGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHI 900 Query: 355 PEVR 344 P+V+ Sbjct: 901 PDVQ 904
>RP8L4_ARATH (Q9FJK8) Probable disease resistance RPP8-like protein 4| Length = 908 Score = 38.9 bits (89), Expect = 0.015 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = -3 Query: 622 KTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSLLKLDKVPQGIEFXXX 443 + +V SK FP L L + ++ E + +G++PC+ L I KL ++P G+++ Sbjct: 809 RRVVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKY--- 865 Query: 442 XXXXXXXXXXKDFRTQWDTKGM-----HQKILHVPEVR 344 ++ + +W K + + K+ H+P+V+ Sbjct: 866 -ITSLKELKIREMKREWKEKLVPGGEDYYKVQHIPDVQ 902
>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas| syringae protein 3) Length = 926 Score = 37.7 bits (86), Expect = 0.033 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = -3 Query: 667 MPNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSL 488 +P L +L N + L ++ F NLK L + M ++E+ I DGA+ + LY+ + Sbjct: 802 LPRLVWLSFYNAYMGPRLRFAQ-GFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRAC 860 Query: 487 LKLDKVPQGIE 455 L+ VP+GIE Sbjct: 861 RGLEYVPRGIE 871
>DRL11_ARATH (Q94HW3) Probable disease resistance protein RDL6/RF9| Length = 1049 Score = 37.7 bits (86), Expect = 0.033 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = -3 Query: 667 MPNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSL 488 MP L L + +K L + FP L+ L L + + E + DG++P + L I + Sbjct: 945 MPQLHTLEIRRCPKLKKL---PNGFPQLQNLELNELEEWEEWIVEDGSMPLLHTLRIWNC 1001 Query: 487 LKLDKVPQGIEF 452 KL ++P G+ F Sbjct: 1002 PKLKQLPDGLRF 1013 Score = 31.6 bits (70), Expect = 2.4 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = -3 Query: 628 SVKTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSLLKLDKVPQG 461 S + +V + FP L L L + + E + DG++P + L I KL K+P G Sbjct: 910 SGRIMVCAGSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNG 965
>R1A_SOLDE (Q8W1E0) Late blight resistance protein R1-A (Protein R1)| Length = 1293 Score = 33.1 bits (74), Expect = 0.82 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L + VK +V + D+FPNL+ LVLR D+ E+ Sbjct: 1176 PQLKILKLEYLSLVKWIV-ADDAFPNLEQLVLRGCQDLMEI 1215
>DRL9_ARATH (Q8W3K0) Probable disease resistance protein At1g58602| Length = 1138 Score = 33.1 bits (74), Expect = 0.82 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -3 Query: 622 KTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSLLKLDKVPQG 461 + +V + FP L L L + + E + DG++P + L I LKL K+P G Sbjct: 907 RIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNG 960 Score = 32.7 bits (73), Expect = 1.1 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = -3 Query: 670 HMPNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVS 491 H+ N++ L S K +V S FP L+ L +R + + E + G++P + LYI Sbjct: 1033 HLKNVS---LFQSFSGKRMVCSGGGFPQLQKLSIREI-EWEEWIVEQGSMPLLHTLYIGV 1088 Query: 490 LLKLDKVPQGIEF 452 L ++P G+ F Sbjct: 1089 CPNLKELPDGLRF 1101
>R1A6_SOLDE (Q6L438) Putative late blight resistance protein homolog R1A-6| Length = 1247 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L ++ +K +V + D+FPNL+ LVLR D+ E+ Sbjct: 1157 PQLKILKLEDVSLMKWIV-ADDAFPNLEQLVLRGCQDLMEI 1196
>R1A4_SOLDE (Q6L439) Putative late blight resistance protein homolog R1A-4| Length = 1096 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L ++ +K +V + D+FPNL+ LVLR D+ E+ Sbjct: 1006 PQLKILKLEDVSLMKWIV-ADDAFPNLEQLVLRGCQDLMEI 1045
>R1A3_SOLDE (Q6L440) Putative late blight resistance protein homolog R1A-3| Length = 760 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/41 (43%), Positives = 27/41 (65%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+LN + +K +V + D+FPNL+ LVLR D+ E+ Sbjct: 610 PQLKILKLNYVCLMKWIV-ADDAFPNLEQLVLRGCKDLMEI 649
>DRL23_ARATH (O82484) Putative disease resistance protein At4g10780| Length = 892 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 16/82 (19%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDS----------------FPNLKTLVLRHMHDVSELKII 533 PN+TYL + + ++ L+ + F L+ L L + ++ + I Sbjct: 764 PNITYLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWI 823 Query: 532 DGALPCIDGLYIVSLLKLDKVP 467 + PC+ G+Y+ KL K+P Sbjct: 824 SLSFPCLSGIYVERCPKLRKLP 845
>R1A10_SOLDE (Q60CZ8) Putative late blight resistance protein homolog R1A-10| Length = 1306 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L ++ +K +V + D+FPNL+ LVLR D+ E+ Sbjct: 1157 PQLKILKLEDVSLMKWIV-ADDAFPNLEQLVLRGCQDLMEI 1196
>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)| Length = 298 Score = 32.0 bits (71), Expect = 1.8 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = -3 Query: 253 VCLDIANSIWSVLLCC-NKFIPQRLVGVHCLPEASVPSFFAGVCIFC*PCSVPFVLFMLH 77 VCL + ++ +L C N + L CL + VC+FC C +P +F+LH Sbjct: 59 VCLCLPCFVYLLLPCVSNSLLHLFLPSFACL-------LLSFVCLFCLQCVLPIPMFLLH 111 Query: 76 ALAVISCEGM 47 V+SC + Sbjct: 112 ---VLSCRAL 118
>R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein homolog R1B-12| Length = 1296 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L + +K L+++ D+FPNL+ LVL D+ E+ Sbjct: 1146 PQLKILKLEYVSLMK-LIVADDAFPNLEQLVLHDCEDLMEI 1185
>DRL4_ARATH (Q9SX38) Putative disease resistance protein At1g50180| Length = 839 Score = 31.2 bits (69), Expect = 3.1 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%) Frame = -3 Query: 652 YLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSELKIIDGALPCIDGLYIVSLLKLDK 473 ++ L + ++K L L + SF K +++ ++ E + DGA+ + + + KL Sbjct: 730 FMVLEKLPNLKILQLFEGSFVGSKLCCSKNLENLEEWTVEDGAMMRLVTVELKCCNKLKS 789 Query: 472 VPQGIEFXXXXXXXXXXXXXKDFRTQWDTKGM-HQKILHVP 353 VP+G F K F+ + + G K+ HVP Sbjct: 790 VPEGTRFLKNLQEVEIGNRTKAFKDKLISGGEDFYKVQHVP 830
>TLR2_BOVIN (Q95LA9) Toll-like receptor 2 precursor (CD282 antigen)| Length = 784 Score = 30.4 bits (67), Expect = 5.3 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%) Frame = -3 Query: 682 MMAXHMPNLTYLRLN-NMHSVKTLVLS--KDSFPNLKTLVLR 566 +++ H+ +L YL L+ N+ S +TL S KD++P L+TLVLR Sbjct: 354 LLSQHLKSLEYLDLSENLMSEETLKNSACKDAWPFLQTLVLR 395
>R1B14_SOLDE (Q6L3Z7) Putative late blight resistance protein homolog R1B-14| Length = 1317 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L + +K +V + D+FPNL+ LVL D+ E+ Sbjct: 1165 PQLKILKLEYLSLMKWIV-ADDAFPNLEQLVLHGCQDLMEI 1204
>R1B13_SOLDE (Q6L3Z0) Putative late blight resistance protein homolog R1B-13| Length = 1141 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L N+ +K +V + D+FP L+ LVL D+ E+ Sbjct: 1044 PQLKILKLENLSLMKWIV-ADDAFPILEQLVLHDCRDLMEI 1083
>IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1| Length = 505 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = -1 Query: 321 LSAVYSCMLLPVQLYHTFNHSNKFASTSPTAFGRY--FYAVTNLSLKDWLVSIAFQR 157 L +VYS L V+ +HT + +++ +T G A+ L L+ ++V I F + Sbjct: 157 LDSVYSSFLFAVETHHTIGYGHRYITTECYLAGAIVCLQAICALLLQSFMVGIVFAK 213
>R1B17_SOLDE (Q6L403) Putative late blight resistance protein homolog R1B-17| Length = 1312 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -3 Query: 664 PNLTYLRLNNMHSVKTLVLSKDSFPNLKTLVLRHMHDVSEL 542 P L L+L + +K +V + D+FPNL+ LVL D+ E+ Sbjct: 1162 PQLKILKLEYLSLMKWIV-ADDAFPNLEQLVLHGCQDLMEI 1201
>YN51_YEAST (P42843) Hypothetical 88.9 kDa protein in RFA2-STB1 intergenic| region Length = 763 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 498 MYKPSMQGRAPSMIFSSLTSCMCLKTSVFRLGKESLDRTKVFTLCMLFSLRY 653 ++ S ++ S+ F+ +S MCL T V L +LD + TLC + S Y Sbjct: 37 LHSTSHDIKSRSLRFNDKSSLMCLPTKVLLLILRTLDFNTLVTLCQVNSRFY 88
>ADR1_ARATH (Q9FW44) Disease resistance protein ADR1 (Activated disease| resistance protein 1) Length = 787 Score = 29.6 bits (65), Expect = 9.1 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%) Frame = -3 Query: 688 LGMMAXHMPNLTY--LRLNNMHSVKTLVLS-KDSF-----------PNLKTLVLRHMHDV 551 L + H+P LT + L N+H + + K+SF P+L L + H D+ Sbjct: 582 LWLKRVHVPELTSCTIPLKNLHKIHLIFCKVKNSFVQTSFDISKIFPSLSDLTIDHCDDL 641 Query: 550 SELKIIDGALPCIDGLYIVSLLKLDKVPQGI 458 ELK I G + ++ L I + ++ ++P+ + Sbjct: 642 LELKSIFG-ITSLNSLSITNCPRILELPKNL 671 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,565,209 Number of Sequences: 219361 Number of extensions: 1913807 Number of successful extensions: 4796 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4794 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
