ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19a21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104784.1| Zea mays PCO129009 mRNA sequence Length = 1520 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 254 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 313 ||||||||||| |||||||| || || |||||||| ||||||||||| |||||||||| Sbjct: 1083 tcctggggagcttcaaacctcgagggagtatcgatgcccatcatgcacatgagtcctgat 1024 Query: 314 atcaagatgat 324 |||| |||||| Sbjct: 1023 atcaggatgat 1013
>gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence Length = 436 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 254 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 313 ||||||||||| |||||| | || || |||||||| |||||||| || ||| |||||| Sbjct: 148 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 89 Query: 314 atcaagatgataag 327 |||||||||||||| Sbjct: 88 atcaagatgataag 75
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 114514 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 114455 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 114454 agatgatcagcagcacta 114437
>dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G12, full insert sequence Length = 1371 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1042 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 983 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 982 agatgattagcagcacta 965
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 1151020 agatgattagcagcacta 1151037
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1276101 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1276160 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 1276161 agatgatcagcagcacta 1276178
>dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138L11, full insert sequence Length = 1354 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1027 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 968 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 967 agatgatcagcagcacta 950
>gb|AY109148.1| Zea mays PCO129008 mRNA sequence Length = 1389 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 254 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 313 ||||||||||| |||||| | || || |||||||| |||||||| || ||| |||||| Sbjct: 1084 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 1025 Query: 314 atcaagatgataag 327 |||||||||||||| Sbjct: 1024 atcaagatgataag 1011
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1273822 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1273881 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 1273882 agatgatcagcagcacta 1273899
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 1151020 agatgattagcagcacta 1151037
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 258 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 317 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 89943 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 90002 Query: 318 agatgataagcaggacta 335 ||||||| ||||| |||| Sbjct: 90003 agatgattagcagcacta 90020
>gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence Length = 7708 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ggcacctttcaagaggaagct 177 ||||||||||||||||||||| Sbjct: 4759 ggcacctttcaagaggaagct 4779
>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7, complete sequence Length = 169471 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ggcacctttcaagaggaagct 177 ||||||||||||||||||||| Sbjct: 127172 ggcacctttcaagaggaagct 127192
>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence Length = 220084 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ggcacctttcaagaggaagct 177 ||||||||||||||||||||| Sbjct: 130358 ggcacctttcaagaggaagct 130378
>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete sequences Length = 105288 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ggcacctttcaagaggaagct 177 ||||||||||||||||||||| Sbjct: 100473 ggcacctttcaagaggaagct 100493
>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence Length = 226392 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aaaatacacaagcaaggcac 161 |||||||||||||||||||| Sbjct: 137595 aaaatacacaagcaaggcac 137614
>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence Length = 220191 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 caagaggaagctatctatat 185 |||||||||||||||||||| Sbjct: 94685 caagaggaagctatctatat 94666
>emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21 Contains the 3' end of the CROCC gene for ciliary rootlet coiled-coil rootletin (KIAA0445), the MFAP2 gene for microfibrillar-associated protein 2, a novel gene, the gene for a novel protein, the SDHB gene for succinate dehydrogenase complex subunit B iron sulfur (Ip), the PADI2 gene for type II peptidyl arginine deiminase, complete sequence Length = 216497 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 atccccatcatgcagcagag 306 |||||||||||||||||||| Sbjct: 154639 atccccatcatgcagcagag 154620
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 agaagtttggcttagaaaaa 145 |||||||||||||||||||| Sbjct: 33106724 agaagtttggcttagaaaaa 33106743
>gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone rp23-221i11, complete sequence Length = 186063 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gaggaagctatctatatcca 188 |||||||||||||||||||| Sbjct: 11543 gaggaagctatctatatcca 11562
>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1369_G08 Length = 104190 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 agaagtttggcttagaaaaa 145 |||||||||||||||||||| Sbjct: 22384 agaagtttggcttagaaaaa 22403
>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete sequence Length = 185413 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gaggaagctatctatatcca 188 |||||||||||||||||||| Sbjct: 22631 gaggaagctatctatatcca 22612
>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence Length = 221596 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 caagaggaagctatctatat 185 |||||||||||||||||||| Sbjct: 35728 caagaggaagctatctatat 35709 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,137,354 Number of Sequences: 3902068 Number of extensions: 3137354 Number of successful extensions: 57807 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57673 Number of HSP's gapped (non-prelim): 134 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
