>DNJ10_ARATH (Q8GYX8) Chaperone protein dnaJ 10 (AtJ10) (AtDjC10)|
          Length = 398

 Score =  159 bits (403), Expect = 6e-39
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)
 Frame = -1

Query: 682 FVHWANAEAKRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTI 503
           F+  A AE  RLS AA+G  ML+T+GYIYVRQA++ELGK  +Y+GVPFIAEW R+KGH I
Sbjct: 158 FISNAEAEVARLSNAAYGVDMLNTIGYIYVRQAAKELGKKAIYLGVPFIAEWFRNKGHFI 217

Query: 502 KSQVHAASGAIALMQLQDGMKKV--EEGANKEEQLMKSFEEKKEAMLNSLWKINVVDIES 329
           KSQ+ AA+GA AL QLQ+ MK+    EG   EE+L +  +  K  M++SLWK+NV DIE+
Sbjct: 218 KSQLTAATGAYALFQLQEEMKRQLNTEGNYTEEELEEYLQAHKRVMIDSLWKLNVADIEA 277

Query: 328 TLSRVCQAVLKDSTVSKDVXXXXXXXXXXXGTIFQGAKSLYHRENSLRVESPMEGEGTTS 149
           TL RVCQ VL+D    ++            G IFQ AK+     + L    P +  G   
Sbjct: 278 TLCRVCQLVLQDPEAKREELRTRARGLKALGRIFQRAKTA-SESDPLENSEPQKLNGNGK 336

Query: 148 SH 143
           +H
Sbjct: 337 NH 338

>YIS4_YEAST (P40564) Hypothetical 48.6 kDa protein in BET1-PAN1 intergenic|
           region
          Length = 432

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
 Frame = -1

Query: 661 EAKRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAA 482
           EA  L   +FG  +LHT+G +Y  +A   L    L+ G+  I   ++ KG      +   
Sbjct: 243 EANLLKMESFGLDILHTIGDVYYEKAEIFLASQNLF-GMGGIFHSMKAKGGVFMDTLRTV 301

Query: 481 SGAIALMQLQDGMKKVEEGANKEE---------QLMKSFEEKKEA-------MLNSLWKI 350
           S AI        ++K++E +   E         Q+  + EE  +        +L++ W  
Sbjct: 302 SAAIDAQNTMKELEKMKEASTNNEPLFDKDGNEQIKPTTEELAQQEQLLMGKVLSAAWHG 361

Query: 349 NVVDIESTLSRVCQAVLKDSTVSK 278
           +  +I STL  VC+ VL+D +VSK
Sbjct: 362 SKYEITSTLRGVCKKVLEDDSVSK 385

>CAJ1_YEAST (P39101) Protein CAJ1|
          Length = 391

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 29/133 (21%), Positives = 55/133 (41%)
 Frame = -1

Query: 682 FVHWANAEAKRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTI 503
           F    + E + L   +FG  +L+ +  +Y  +A+  +   K Y G+  I    RD   ++
Sbjct: 206 FTRKLDQEIEDLKLESFGLELLYLLARVYKTKANNFIMSKKTY-GISKIFTGTRDNARSV 264

Query: 502 KSQVHAASGAIALMQLQDGMKKVEEGANKEEQLMKSFEEKKEAMLNSLWKINVVDIESTL 323
           KS  +  S  +   +  + M +V      + +  K         L  +W ++  ++E  L
Sbjct: 265 KSAYNLLSTGLEAQKAMEKMSEVNTDELDQYERAKFESTMAGKALGVMWAMSKFELERKL 324

Query: 322 SRVCQAVLKDSTV 284
             VC  +L D  V
Sbjct: 325 KDVCNKILNDKKV 337

>YAY1_SCHPO (Q10209) Hypothetical J-domain protein C4H3.01 in chromosome I|
          Length = 392

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
 Frame = -1

Query: 661 EAKRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAA 482
           EA  L   +FG  +LH +G +Y ++    L  SK   G+      +++KG   ++     
Sbjct: 211 EANTLRIESFGVEILHAIGEVYTQKGRTVLKSSK--FGIGGFWSRMKEKGKIARATWDTV 268

Query: 481 SGAIALMQLQDGMKKVEEGANKE---EQLMKSFEEKKEAMLNSLWKINVVDIESTLSRVC 311
           S A+      D M+K+E+    +   E+  K   +    +L + W     DI+  L   C
Sbjct: 269 SAAMDAKLSIDQMQKLEDKGEDQASAEERAKLELDITGKILRASWCGARYDIQGVLREAC 328

Query: 310 QAVLK 296
             +LK
Sbjct: 329 SNLLK 333

>TATB_YERPE (Q8ZAM3) Sec-independent protein translocase protein tatB homolog|
          Length = 220

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 LGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVEEGA--NKEEQLM 401
           LG  +L + V  ++ W+R       +  +  +  + L +LQD +KKVE+    N   +L 
Sbjct: 20  LGPERLPVAVRTVSGWIRTLRSLAATVQNELAQELKLQELQDSLKKVEQAGLQNLTPELK 79

Query: 400 KSFEEKKEA 374
            S +E KEA
Sbjct: 80  ASMDELKEA 88

>TRUB_PICTO (Q6L1A0) Probable tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 349

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
 Frame = -1

Query: 664 AEAKRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHA 485
           AE +R     F E+M HT+  +      + +G  KL+  +    +++  K   +  +  A
Sbjct: 157 AELRRTRTGPFDESMCHTLQEVSDAFKLKSMGNEKLFKNIFIPMDFIFIKYPKVIVKETA 216

Query: 484 ASGAIALMQLQDGMKKVEEGANKEEQLMKSFEEKKE------AMLNS--LWKINVVDIES 329
                    +         G+ K+  ++  + EK E       M+N+  ++ + V+DI++
Sbjct: 217 LKNIAHGSDIYPAGIHAITGSPKKGDVVAVYTEKNELVATGTMMVNADEIYDLKVIDIDN 276

Query: 328 TLSRVCQAVLKDSTVSKD 275
            L        KDS V KD
Sbjct: 277 VLIETGDNDGKDSLVRKD 294

>PUR8_HAEIN (P44797) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)|
           (ASL)
          Length = 456

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = -1

Query: 610 VGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVE 431
           +GY  +  AS   G SKL +  P + E +      +   +        + +  + +K++ 
Sbjct: 350 LGYCLIAYASTRKGISKLEVNQPHLLEELNQNWEVLAEPIQTVMRRYGIEKPYEKLKELT 409

Query: 430 EGANKEEQLMKSFEEK 383
            G    EQ M+ F +K
Sbjct: 410 RGKRVTEQAMREFIDK 425

>GNL3_DROME (Q8MT06) Guanine nucleotide-binding protein-like 3 homolog|
           (Nucleostemin homolog)
          Length = 581

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = -1

Query: 595 VRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAA---SGAIALMQLQDGM----KK 437
           V +A +     +L     F AE  ++K  T++S V  A   S    +M   D      KK
Sbjct: 67  VEEAKQRQEAERLARREAFKAEREQNKFKTLESMVEDADMRSTVHGIMHENDAQDQDEKK 126

Query: 436 VEEGANKEEQLMKSFEEKKEAMLNSLWKINVVDIESTLSRVCQAV 302
            +    KE+ L + F+E ++ + N+   + VVD    L   C  V
Sbjct: 127 YKNAVTKEQSLKQYFKEFRKVIENADVVLEVVDARDPLGTRCNEV 171

>CH60_BACHD (O50305) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 544

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
 Frame = -1

Query: 643 EAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIAL 464
           E  FG  ++   G    ++   EL  +   MG   +AE V  K + I       +  +A 
Sbjct: 40  EKKFGSPLITNDGVTIAKEI--ELEDAFENMGAKLVAE-VASKTNDIAGDGTTTATVLAQ 96

Query: 463 MQLQDGMKKVEEGANKEEQLMKSFEEKKEAMLNSLWKIN-VVDIESTLSRVCQAVLKDST 287
             +++G+K V  GAN    + K  E+  +  +  L KI+  ++ + ++++V      D  
Sbjct: 97  AMIREGLKNVTSGAN-PMVIRKGIEKATQVAVEELSKISKPIEGKDSIAQVAAISSADDE 155

Query: 286 VSK 278
           V K
Sbjct: 156 VGK 158

>SH3G2_MOUSE (Q62420) SH3-containing GRB2-like protein 2 (EC 2.3.1.-) (SH3|
           domain protein 2A) (Endophilin 1) (SH3p4)
          Length = 352

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = -1

Query: 460 QLQDGMKKVEEGANKEEQL---MKSFEEKKEAMLNSLWKINVVDIE--STLSRVCQAVLK 296
           +L  G KK  +G   +E+L   ++ F+E KE   +S++ +  +DIE  S LS + QA L+
Sbjct: 165 RLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE 224

>ZN678_HUMAN (Q5SXM1) Zinc finger protein 678|
          Length = 525

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +2

Query: 29  GKHTYRCVESKPAVPQYYKQTI---IHRDPNNSQIVKCQSSVRRCRSLPFHRRFH 184
           G+  Y+C E   A  Q+   T    IH      Q  +C  +  RC  L  H+R H
Sbjct: 289 GEKPYKCEECGKAFTQFASLTRHKRIHTGEKPYQCEECGKTFNRCSHLSSHKRIH 343

>RS2_RHOBA (Q7UKH4) 30S ribosomal protein S2|
          Length = 260

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
 Frame = -1

Query: 655 KRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAE-WV---RDKGHTIKSQVH 488
           K LS+ A G +++  VG    RQA   + +  L  G+PF++E W+        TI+S++ 
Sbjct: 55  KYLSQVAAGGSLILFVGT--KRQAGEAVEEQSLRCGMPFVSERWLGGTLTNFRTIRSRLG 112

Query: 487 AASGAIALMQ---LQDGMKKVEEGANKEEQLM 401
                 AL     + D  KK++   N+E + M
Sbjct: 113 RLEELEALRAGDGINDYSKKMQSSLNREYRKM 144

>IF2_CHLCV (Q823F2) Translation initiation factor IF-2|
          Length = 887

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
 Frame = -1

Query: 523 RDKGHTIKSQVHAASGAIALMQLQDG-------------MKKVEEGANKEEQLMKSFEEK 383
           R +G  I+S++H   GA+A + +Q+G               KV+   N+  QLMKS    
Sbjct: 568 RARGLVIESELHKGLGAVATILVQNGTLHLGEALVFNDCYGKVKTMHNEHNQLMKSASPS 627

Query: 382 KEAMLNSL 359
             A++  L
Sbjct: 628 IPALITGL 635

>HRPA_PSESY (Q52420) Hrp pili protein hrpA (TTSS pilin hrpA)|
          Length = 108

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 451 DGMKKVEEGANKEEQLMKSFEEKKEAMLNSL 359
           DG    E G  +E  ++  FE+KKEA+ N +
Sbjct: 66  DGTANEENGLLRESSMLAGFEDKKEALSNQI 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,614,534
Number of Sequences: 219361
Number of extensions: 1959170
Number of successful extensions: 5685
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5681
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)