ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19a17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
2dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
3dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
4dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
5dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
6gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence 220 3e-54
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
8dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
9ref|XM_467454.1| Oryza sativa (japonica cultivar-group), mRNA 74 5e-10
10dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
13gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, comple... 44 0.43
14emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.7
15gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence 40 6.8
16gb|BC076559.1| Danio rerio zgc:92474, mRNA (cDNA clone MGC:92474... 40 6.8
17gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, co... 40 6.8
18emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, com... 40 6.8
19gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.8
20gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence 40 6.8
21gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Canc... 40 6.8
22emb|AJ586081.1| Selago atherstonei chloroplast trnT-trnL interge... 40 6.8
23emb|AJ586077.1| Selago villosa chloroplast trnT-trnL intergenic ... 40 6.8
24emb|AJ586073.1| Selago foliosa chloroplast trnT-trnL intergenic ... 40 6.8
25gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete... 40 6.8
26ref|NM_001002644.1| Danio rerio zgc:92474 (zgc:92474), mRNA 40 6.8
27emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in... 40 6.8
28gb|AC153617.3| Mus musculus 6 BAC RP23-177G20 (Roswell Park Canc... 40 6.8
29emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chr... 40 6.8 
>dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O14, full
            insert sequence
          Length = 2267

 Score =  293 bits (148), Expect = 3e-76
 Identities = 187/200 (93%)
 Strand = Plus / Minus

                                                                        
Query: 300  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 359
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1880 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1821

                                                                        
Query: 360  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 419
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1820 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1761

                                                                        
Query: 420  caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 479
            |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1760 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 1701

                                
Query: 480  tgaacatgtacctcttcacg 499
            |||||||||||||| |||||
Sbjct: 1700 tgaacatgtacctcctcacg 1681



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 20   aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 58
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2174 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2135
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>dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P10, full
            insert sequence
          Length = 2308

 Score =  293 bits (148), Expect = 3e-76
 Identities = 187/200 (93%)
 Strand = Plus / Minus

                                                                        
Query: 300  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 359
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1823 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1764

                                                                        
Query: 360  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 419
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1763 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1704

                                                                        
Query: 420  caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 479
            |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1703 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 1644

                                
Query: 480  tgaacatgtacctcttcacg 499
            |||||||||||||| |||||
Sbjct: 1643 tgaacatgtacctcctcacg 1624



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 20   aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 58
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2117 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2078
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>dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020C22, full
            insert sequence
          Length = 2286

 Score =  293 bits (148), Expect = 3e-76
 Identities = 187/200 (93%)
 Strand = Plus / Minus

                                                                        
Query: 300  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 359
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1839 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1780

                                                                        
Query: 360  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 419
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1779 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1720

                                                                        
Query: 420  caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 479
            |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1719 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 1660

                                
Query: 480  tgaacatgtacctcttcacg 499
            |||||||||||||| |||||
Sbjct: 1659 tgaacatgtacctcctcacg 1640



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 20   aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 58
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2133 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2094
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>dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P16, full
           insert sequence
          Length = 1255

 Score =  293 bits (148), Expect = 3e-76
 Identities = 187/200 (93%)
 Strand = Plus / Minus

                                                                       
Query: 300 tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 359
           ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 802 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 743

                                                                       
Query: 360 gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 419
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 742 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 683

                                                                       
Query: 420 caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 479
           |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 682 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 623

                               
Query: 480 tgaacatgtacctcttcacg 499
           |||||||||||||| |||||
Sbjct: 622 tgaacatgtacctcctcacg 603



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 20   aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 58
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 1096 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 1057
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>dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B09, full
           insert sequence
          Length = 1331

 Score =  293 bits (148), Expect = 3e-76
 Identities = 187/200 (93%)
 Strand = Plus / Minus

                                                                       
Query: 300 tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 359
           ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 999 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 940

                                                                       
Query: 360 gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 419
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 939 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 880

                                                                       
Query: 420 caaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctgac 479
           |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 879 caaggattgtctagttgctcaggctctccagtaactatcaaacggccagcaggatctgac 820

                               
Query: 480 tgaacatgtacctcttcacg 499
           |||||||||||||| |||||
Sbjct: 819 tgaacatgtacctcctcacg 800
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>gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence
          Length = 1263

 Score =  220 bits (111), Expect = 3e-54
 Identities = 177/199 (88%)
 Strand = Plus / Minus

                                                                       
Query: 298 attttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctg 357
           ||||||| || |||||||||||||| |||||||  ||||||||||| ||||||||||| |
Sbjct: 805 attttgattgttcaaatggtgcacgcacaaatagctgcccatggagggtgacaactgcgg 746

                                                                       
Query: 358 aggtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacac 417
           ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 745 aggtttggtgagggtcaatgcgggaaggcaaactaatgaccttcttgaatggagtgacac 686

                                                                       
Query: 418 cccaaggattatctagttgttcaggctctcctgtaactatcaagcggccagcaggatctg 477
           |||| || ||||| | ||| ||||||||||| ||||||||||| || ||||| || || |
Sbjct: 685 cccatgggttatccaattgctcaggctctccagtaactatcaaacgaccagctgggtcgg 626

                              
Query: 478 actgaacatgtacctcttc 496
           |||||||||||||||||||
Sbjct: 625 actgaacatgtacctcttc 607
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  163 bits (82), Expect = 7e-37
 Identities = 94/98 (95%)
 Strand = Plus / Minus

                                                                            
Query: 395      gaccttcttgaatggagtaacaccccaaggattatctagttgttcaggctctcctgtaac 454
                ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 24635121 gaccttcttgaatggagtaacaccccaaggattgtctagttgctcaggctctccagtaac 24635062

                                                      
Query: 455      tatcaagcggccagcaggatctgactgaacatgtacct 492
                |||||| |||||||||||||||||||||||||||||||
Sbjct: 24635061 tatcaaacggccagcaggatctgactgaacatgtacct 24635024



 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                            
Query: 300      tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 359
                ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 24635304 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 24635245

                                                        
Query: 360      gtttgatgaggatcaatgcgggagggcaaactaatgacct 399
                ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24635244 gtttgatgaggatcaatgcgggagggcaaactaataacct 24635205



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                        
Query: 20       aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 58
                ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 24635965 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 24635926
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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0040H10
          Length = 173301

 Score =  163 bits (82), Expect = 7e-37
 Identities = 94/98 (95%)
 Strand = Plus / Minus

                                                                          
Query: 395    gaccttcttgaatggagtaacaccccaaggattatctagttgttcaggctctcctgtaac 454
              ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 118314 gaccttcttgaatggagtaacaccccaaggattgtctagttgctcaggctctccagtaac 118255

                                                    
Query: 455    tatcaagcggccagcaggatctgactgaacatgtacct 492
              |||||| |||||||||||||||||||||||||||||||
Sbjct: 118254 tatcaaacggccagcaggatctgactgaacatgtacct 118217



 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                          
Query: 300    tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 359
              ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 118497 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 118438

                                                      
Query: 360    gtttgatgaggatcaatgcgggagggcaaactaatgacct 399
              ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 118437 gtttgatgaggatcaatgcgggagggcaaactaataacct 118398



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                      
Query: 20     aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 58
              ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 119158 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 119119
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>ref|XM_467454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2072

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                        
Query: 310  caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 369
            ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 1565 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 1506

                                                                        
Query: 370  gatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccccaaggattat 429
            |||| || |   | |||| | | |  ||||||||||||||||| |  |||||||||||||
Sbjct: 1505 gatcgatcctcaatggcagattgaccaccttcttgaatggagtgatcccccaaggattat 1446

             
Query: 430  c 430
            |
Sbjct: 1445 c 1445



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 465  ccagcaggatctgactgaacatgtacctcttc 496
            ||||||||||||||||||||||| ||||||||
Sbjct: 1410 ccagcaggatctgactgaacatgcacctcttc 1379
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>dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B09, full
            insert sequence
          Length = 2072

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                        
Query: 310  caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 369
            ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 1565 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 1506

                                                                        
Query: 370  gatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccccaaggattat 429
            |||| || |   | |||| | | |  ||||||||||||||||| |  |||||||||||||
Sbjct: 1505 gatcgatcctcaatggcagattgaccaccttcttgaatggagtgatcccccaaggattat 1446

             
Query: 430  c 430
            |
Sbjct: 1445 c 1445



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 465  ccagcaggatctgactgaacatgtacctcttc 496
            ||||||||||||||||||||||| ||||||||
Sbjct: 1410 ccagcaggatctgactgaacatgcacctcttc 1379
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 310      caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 369
                ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 29630241 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 29630300

                    
Query: 370      gatc 373
                ||||
Sbjct: 29630301 gatc 29630304



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 465      ccagcaggatctgactgaacatgtacct 492
                ||||||||||||||||||||||| ||||
Sbjct: 29630475 ccagcaggatctgactgaacatgcacct 29630502



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 396      accttcttgaatggagtaacaccccaaggattatc 430
                ||||||||||||||||| |  ||||||||||||||
Sbjct: 29630406 accttcttgaatggagtgatcccccaaggattatc 29630440
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>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 310   caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 369
             ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 87962 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 88021

                 
Query: 370   gatc 373
             ||||
Sbjct: 88022 gatc 88025



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 465   ccagcaggatctgactgaacatgtacct 492
             ||||||||||||||||||||||| ||||
Sbjct: 88196 ccagcaggatctgactgaacatgcacct 88223



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 396   accttcttgaatggagtaacaccccaaggattatc 430
             ||||||||||||||||| |  ||||||||||||||
Sbjct: 88127 accttcttgaatggagtgatcccccaaggattatc 88161
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>gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, complete sequence
          Length = 177716

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 277    tttgtcaagtagagtgtcatgatttt 302
              ||||||||||||| ||||||||||||
Sbjct: 111711 tttgtcaagtagactgtcatgatttt 111736
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>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 352    ctgctgaggtttgatgaggatcaat 376
              |||||||||||||||| ||||||||
Sbjct: 112206 ctgctgaggtttgatgcggatcaat 112182
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>gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence
          Length = 1830

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 396  accttcttgaatggagt-aacaccccaaggattatc 430
            ||||||||||||||||| | | ||||||||||||||
Sbjct: 1637 accttcttgaatggagtgatccccccaaggattatc 1602
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>gb|BC076559.1| Danio rerio zgc:92474, mRNA (cDNA clone MGC:92474 IMAGE:7044589),
            complete cds
          Length = 2575

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 131  aattagttagaattaatcaataca 154
            |||||||||||||| |||||||||
Sbjct: 2447 aattagttagaattgatcaataca 2470
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>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence
          Length = 184265

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 25    ggaacaaataaaccatgaacatttgagcatca 56
             ||||||||||||||| | ||| ||||||||||
Sbjct: 45048 ggaacaaataaaccaaggacaattgagcatca 45079
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>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence
          Length = 270722

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     atgaacatttgagcatcagg 58
              ||||||||||||||||||||
Sbjct: 142128 atgaacatttgagcatcagg 142109
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 32      ataaaccatgaacatttgagcatc 55
               |||||||| |||||||||||||||
Sbjct: 2150103 ataaaccaagaacatttgagcatc 2150080
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>gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence
          Length = 163056

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ttagaattaatcaatacaca 156
              ||||||||||||||||||||
Sbjct: 141207 ttagaattaatcaatacaca 141188
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>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219861

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aaaggaacaaataaaccatg 41
              ||||||||||||||||||||
Sbjct: 146130 aaaggaacaaataaaccatg 146111
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>emb|AJ586081.1| Selago atherstonei chloroplast trnT-trnL intergenic spacer, trnL
           gene, and trnL-trnF intergenic spacer, specimen voucher
           Bremer  4319 (UPS)
          Length = 1758

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 tctaattagttagaattaat 147
           ||||||||||||||||||||
Sbjct: 486 tctaattagttagaattaat 467
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>emb|AJ586077.1| Selago villosa chloroplast trnT-trnL intergenic spacer, trnL gene,
           and trnL-trnF intergenic spacer, specimen voucher
           Hilliard & Burtt 18503 (S)
          Length = 1736

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 tctaattagttagaattaat 147
           ||||||||||||||||||||
Sbjct: 465 tctaattagttagaattaat 446
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>emb|AJ586073.1| Selago foliosa chloroplast trnT-trnL intergenic spacer, trnL gene,
           and trnL-trnF intergenic spacer, specimen voucher Bremer
           3816 (UPS)
          Length = 1700

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 tctaattagttagaattaat 147
           ||||||||||||||||||||
Sbjct: 428 tctaattagttagaattaat 409
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>gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete sequence
          Length = 135586

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   tcccaccagcaaggcaacat 264
             ||||||||||||||||||||
Sbjct: 22798 tcccaccagcaaggcaacat 22779
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>ref|NM_001002644.1| Danio rerio zgc:92474 (zgc:92474), mRNA
          Length = 2575

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 131  aattagttagaattaatcaataca 154
            |||||||||||||| |||||||||
Sbjct: 2447 aattagttagaattgatcaataca 2470
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>emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in linkage group 10,
            complete sequence
          Length = 122664

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  ttagaattaatcaatacaca 156
            ||||||||||||||||||||
Sbjct: 8591 ttagaattaatcaatacaca 8610
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>gb|AC153617.3| Mus musculus 6 BAC RP23-177G20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199525

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    gttaaaccgaaaaaggaacaaata 34
             |||||||| |||||||||||||||
Sbjct: 77016 gttaaacctaaaaaggaacaaata 76993
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>emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chromosome 4, complete
             sequence
          Length = 201246

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 126   catctaattagttagaattaatca 149
             |||||||||| |||||||||||||
Sbjct: 27751 catctaattaattagaattaatca 27728


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,110,931
Number of Sequences: 3902068
Number of extensions: 4110931
Number of successful extensions: 75991
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75856
Number of HSP's gapped (non-prelim): 135
length of query: 501
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 479
effective length of database: 17,147,199,772
effective search space: 8213508690788
effective search space used: 8213508690788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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