ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags19a15 |
|---|---|
| Clone Library Name | barley_pub |
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 33.1 bits (74), Expect(2) = 0.18 Identities = 42/171 (24%), Positives = 59/171 (34%), Gaps = 7/171 (4%) Frame = +1 Query: 13 STRCRHSNST*YILQRTMNNSSCT*DNSVAKSNYTYSLADATRHFSVATPTTHSSADATT 192 +T+ S + + T + +S T S + T S T S + T +S +TT Sbjct: 129 TTKSSTSTTPTTTITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTT 188 Query: 193 PYFSQYXXXXXXXXXXXXXXXXXNSPTHTHRHA*TSIITTVTKPETHSLPTRS-----SS 357 P S S T T TS TT T P T + PT S S Sbjct: 189 PTTSTTSTTPTTSTTSTTPTTSTTSTTPT-----TS--TTSTTPTTSTTPTTSTTSTTSQ 241 Query: 358 LHQQATNP*PKN*QPT**HQGEPNSCAEATCEPKAT--TTKPYRRISAPPT 504 ++T P + T P + +T +T TT IS PT Sbjct: 242 TSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTAPT 292 Score = 20.8 bits (42), Expect(2) = 0.18 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +3 Query: 582 PSTHLPSTDKILPSISQGRVITTTSS 659 P+T STD S+S TT+++ Sbjct: 327 PATSTASTDHTTSSVSTTNAFTTSAT 352
>MUC3A_HUMAN (Q02505) Mucin-3A (Intestinal mucin 3A) (Fragments)| Length = 213 Score = 30.0 bits (66), Expect(2) = 1.6 Identities = 24/96 (25%), Positives = 37/96 (38%) Frame = +1 Query: 73 SSCT*DNSVAKSNYTYSLADATRHFSVATPTTHSSADATTPYFSQYXXXXXXXXXXXXXX 252 SS T +S+ + TY + T TT S + T + Sbjct: 34 SSITTTDSIVTTETTYHSTPSFTSLITITETTSHSTPSYTTSITSTKTPSHSTPSYTTSI 93 Query: 253 XXXNSPTHTHRHA*TSIITTVTKPETHSLPTRSSSL 360 P+H+ +SIITT T +HS P+ +SS+ Sbjct: 94 TTTEIPSHSTPSFTSSIITTET--TSHSTPSFTSSM 127 Score = 30.0 bits (66), Expect = 6.5 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Frame = +1 Query: 73 SSCT*DNSVAKSNYTYSLADATRHFSVATPTTHSSADATTPYFSQYXXXXXXXXXXXXXX 252 SS T + + S +++ + T V T TT+ S TP F+ Sbjct: 17 SSITTTEAPSSSTPSFTSSITTTDSIVTTETTYHS----TPSFTSLITITETTSHSTPSY 72 Query: 253 XXXNSPTHTHRHA*TSIITTVTKPE--THSLPTRSSSL 360 + T T H+ S T++T E +HS P+ +SS+ Sbjct: 73 TTSITSTKTPSHSTPSYTTSITTTEIPSHSTPSFTSSI 110 Score = 20.8 bits (42), Expect(2) = 1.6 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = +3 Query: 369 SDQPLTEELTTYLMTSRRTKQLCRSNV*T*SNHHQT 476 S LT +TT TS T L S T + H T Sbjct: 130 STASLTSSMTTTETTSHSTPSLTSSMTATETTSHST 165
>FTSK_HELPY (O25722) DNA translocase ftsK| Length = 858 Score = 31.6 bits (70), Expect = 2.2 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 398 NLPNDIKANQTAVQKQRVNLKQPPPNPTAGSPLPQPFL 511 N P+DI+ +T K++ N K+ P N +P +PFL Sbjct: 181 NTPSDIQKKETKNDKEKENRKENPINENHKTPNEEPFL 218
>MYBA_HUMAN (P10243) Myb-related protein A (A-Myb)| Length = 752 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +1 Query: 415 QGEPNSCAEATCEPKATTTKPYRRISAPPTLPLKKYRKGLIGTEPGSD 558 +G+ N+C E T+ + S PP + L+K RK +G PGS+ Sbjct: 416 EGKKNTCNGGNSEAVPLTSPNIAKFSTPPAI-LRKKRKMRVGHSPGSE 462
>MUTS_BRUSU (Q8G310) DNA mismatch repair protein mutS| Length = 910 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +1 Query: 7 IRSTRCRHSNST*YILQRTMNNSSCT*DNSVAKSNYTY--SLADATR 141 I+S + +H+N Y ++ T NNS D AKS + + ++A+A R Sbjct: 489 IKSLKIKHNNVLGYFIEVTANNSGAMTDTDEAKSRFIHRQTMANAMR 535
>MUTS_BRUME (Q8YES6) DNA mismatch repair protein mutS| Length = 910 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +1 Query: 7 IRSTRCRHSNST*YILQRTMNNSSCT*DNSVAKSNYTY--SLADATR 141 I+S + +H+N Y ++ T NNS D AKS + + ++A+A R Sbjct: 489 IKSLKIKHNNVLGYFIEVTANNSGAMTDTDEAKSRFIHRQTMANAMR 535
>MUTS_BRUAB (Q57FM9) DNA mismatch repair protein mutS| Length = 910 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +1 Query: 7 IRSTRCRHSNST*YILQRTMNNSSCT*DNSVAKSNYTY--SLADATR 141 I+S + +H+N Y ++ T NNS D AKS + + ++A+A R Sbjct: 489 IKSLKIKHNNVLGYFIEVTANNSGAMTDTDEAKSRFIHRQTMANAMR 535
>FP1_MYTCO (Q25434) Adhesive plaque matrix protein precursor (Foot protein 1)| (MCFP1) Length = 872 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +1 Query: 421 EPNSCAEATCEPKATTTKPYR-RISAPPTLPLKKYRKGLIGTEPGSDPDKACRRIHPHTY 597 +P T +PK + YR +I+ PPT KK ++ P ++ +P +Y Sbjct: 633 KPKITYPPTYKPKPSYPPSYRPKITYPPTYKPKKSYPQAYKSKGSYPPSYQPKKTYPPSY 692 Query: 598 HPQIKSFHPSVRGELLPPP 654 P+ K++ P+ + ++ PP Sbjct: 693 KPK-KTYPPTYKPKISYPP 710
>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1| (Adenovirus early region 1B-associated protein 5) (E1B-55 kDa-associated protein 5) (E1B-AP5) Length = 856 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 359 YTSKRPTLNRRINNLPNDIKANQTAVQKQRVNLKQPPPNPTAGSPLPQP 505 Y+ R N R NN N+ + A Q+Q + PPP P P P P Sbjct: 667 YSQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPP 715
>FP1_MYTGA (Q27409) Adhesive plaque matrix protein precursor (Foot protein 1)| (MGFP1) (MGFP-1) Length = 751 Score = 30.0 bits (66), Expect = 6.5 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +1 Query: 451 EPKATTTKPYR-RISAPPTLPLKKYRKGLIGTEPGSDPDKACRRIHPHTYHPQIKSFHPS 627 +PK T Y+ ++S PPT KK + T+ ++ +P TY P+I S+ P+ Sbjct: 210 KPKKTYPSTYKPKVSYPPTYKSKKSYPPIYKTKASYPSSYKPKKTYPSTYKPKI-SYPPT 268 Query: 628 VRGE 639 + + Sbjct: 269 YKAK 272
>CSP_PLABA (P23093) Circumsporozoite protein precursor (CS)| Length = 347 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +2 Query: 371 RPTLNRRINNLPNDIKANQTAVQKQRVNLKQPPPNPTAGSPLP 499 R T+NR + + P K + ++ LKQPPP P P P Sbjct: 61 RNTVNRLLADAPEGKKNEKKNKIERNNKLKQPPPPPNPNDPPP 103
>C49A1_DROME (Q9V5L3) Probable cytochrome P450 49a1 (EC 1.14.-.-) (CYPXLIXA1)| Length = 589 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 436 AEATCEPKATTTKPYRRISAPPTLPL--KKYR-KGLIGTEPGSDPDKACRRIH 585 AE T P A +PY + P LPL +R LIGT SD DK +H Sbjct: 87 AETTSSP-AAAVRPYSEVPGPYPLPLIGNSWRFAPLIGTYKISDLDKVMNELH 138
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 29.6 bits (65), Expect = 8.5 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Frame = +1 Query: 49 ILQRTMNNSSC--T*DNSVAKSNYTYSLADATRHFSVATPTTHSSADATTPYFSQYXXXX 222 +LQ T+++SS T +S + S + S T S ++ ++ SS+ +++ S Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSS 181 Query: 223 XXXXXXXXXXXXXNSPTHTHRHA*TSIITTVTKPETHSLPTRSSSLHQQATNP 381 +S + + + +S+ T + +HS + SSS ++ P Sbjct: 182 SSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRP 234
>POU1_XENLA (P31363) Transcription factor POU1 (XLPOU1) (Homeotic protein| NRL-22/NRL-34) Length = 356 Score = 25.8 bits (55), Expect(2) = 8.5 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +3 Query: 396 TTYLMTSRRTKQLCRSNV*T*SNHHQTLPPDLRSPNPSSE 515 TTY + Q + T + HH +L P PNP+S+ Sbjct: 12 TTYREVQKMMHQEYLQGLATNAGHHMSLTPHQWLPNPASD 51 Score = 22.3 bits (46), Expect(2) = 8.5 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +2 Query: 560 RTKLAAGSIH--TPTIHR*NPSIHQSGESYYHHLFSFS 667 R L++G H + +H+ +PS H +S HHL S Sbjct: 73 REDLSSGFHHHRSHLVHQQSPSSHAWAQSGGHHLAPMS 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,927,890 Number of Sequences: 219361 Number of extensions: 1901561 Number of successful extensions: 6007 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5353 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5973 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
