ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19a14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 5e-57
2dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 5e-57
3dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 5e-57
4gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 176 6e-41
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
6dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
7dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
8ref|NM_190018.1| Oryza sativa (japonica cultivar-group), predic... 64 6e-07
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
10dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
11dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
12dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
13dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
14gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 48 0.037
15gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18... 48 0.037
16ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glyc... 48 0.037
17gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochon... 44 0.58
18gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial... 44 0.58
19ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predic... 42 2.3
20emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 42 2.3
21emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 42 2.3
22emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 42 2.3
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
24dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 42 2.3
25dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
26dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
27gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosom... 40 9.0
28ref|XM_463507.1| Oryza sativa (japonica cultivar-group), predic... 40 9.0
29gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, co... 40 9.0
30gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, co... 40 9.0
31gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 con... 40 9.0
32gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete se... 40 9.0
33gb|BC047222.1| Homo sapiens transmembrane protease, serine 5 (sp... 40 9.0
34gb|BC028065.1| Homo sapiens transmembrane protease, serine 5 (sp... 40 9.0
35ref|NM_030770.1| Homo sapiens transmembrane protease, serine 5 (... 40 9.0
36gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 9.0
37gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, compl... 40 9.0
38gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 9.0
39dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
40dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
41gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_... 40 9.0
42dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
43dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.0
44dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.0
45gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome... 40 9.0
46gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 gen... 40 9.0
47gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 gen... 40 9.0
48dbj|AB028140.1| Homo sapiens mRNA for spinesin, complete cds 40 9.0
49dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0 
>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full
            insert sequence
          Length = 2096

 Score =  230 bits (116), Expect = 5e-57
 Identities = 215/248 (86%)
 Strand = Plus / Minus

                                                                        
Query: 223  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1762 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1703

                                                                        
Query: 283  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
            |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 1702 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1643

                                                                        
Query: 343  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
            | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1642 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1583

                                                                        
Query: 403  cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 462
            |||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |
Sbjct: 1582 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1523

                    
Query: 463  cgtcgtcg 470
            ||||||||
Sbjct: 1522 cgtcgtcg 1515



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 507  gctccgttctcgtggatcatgaccacagggttcttgta 544
            ||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 1478 gctccattctcatggatcatgacaatagggttcttgta 1441
to top
>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full
            insert sequence
          Length = 2059

 Score =  230 bits (116), Expect = 5e-57
 Identities = 215/248 (86%)
 Strand = Plus / Minus

                                                                        
Query: 223  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1719 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1660

                                                                        
Query: 283  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
            |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 1659 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1600

                                                                        
Query: 343  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
            | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1599 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1540

                                                                        
Query: 403  cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 462
            |||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |
Sbjct: 1539 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1480

                    
Query: 463  cgtcgtcg 470
            ||||||||
Sbjct: 1479 cgtcgtcg 1472



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 507  gctccgttctcgtggatcatgaccacagggttcttgta 544
            ||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 1435 gctccattctcatggatcatgacaatagggttcttgta 1398
to top
>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full
            insert sequence
          Length = 1993

 Score =  230 bits (116), Expect = 5e-57
 Identities = 215/248 (86%)
 Strand = Plus / Minus

                                                                        
Query: 223  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1653 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1594

                                                                        
Query: 283  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
            |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 1593 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 1534

                                                                        
Query: 343  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
            | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 1533 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 1474

                                                                        
Query: 403  cgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaact 462
            |||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |
Sbjct: 1473 cgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaat 1414

                    
Query: 463  cgtcgtcg 470
            ||||||||
Sbjct: 1413 cgtcgtcg 1406



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 507  gctccgttctcgtggatcatgaccacagggttcttgta 544
            ||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 1369 gctccattctcatggatcatgacaatagggttcttgta 1332
to top
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score =  176 bits (89), Expect = 6e-41
 Identities = 164/189 (86%)
 Strand = Plus / Plus

                                                                         
Query: 223   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
             |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 71059 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 71118

                                                                         
Query: 283   acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
             |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 71119 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 71178

                                                                         
Query: 343   caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
             | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 71179 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 71238

                      
Query: 403   cgttcctgc 411
             |||||||||
Sbjct: 71239 cgttcctgc 71247



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 152/189 (80%)
 Strand = Plus / Plus

                                                                         
Query: 223   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
             |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 97155 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 97214

                                                                         
Query: 283   acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
             ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 97215 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 97274

                                                                         
Query: 343   caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
             |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 97275 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 97334

                      
Query: 403   cgttcctgc 411
             |||||||||
Sbjct: 97335 cgttcctgc 97343



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                         
Query: 407   cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 466
             |||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |||||
Sbjct: 71497 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 71556

                 
Query: 467   gtcg 470
             ||||
Sbjct: 71557 gtcg 71560



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 371   tgaccacacgaagtagccctgcacgttcgacccgttcctgc 411
             ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 89265 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 89305



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 513   ttctcgtggatcatgaccacagggttcttgta 544
             ||||| ||||||||||| | ||||||||||||
Sbjct: 71886 ttctcatggatcatgacaatagggttcttgta 71917
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  176 bits (89), Expect = 6e-41
 Identities = 164/189 (86%)
 Strand = Plus / Plus

                                                                            
Query: 223      ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
                |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 19587984 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 19588043

                                                                            
Query: 283      acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
                |||| |||||||||   |||  |||||||||||| |||||||||||||  | ||||||||
Sbjct: 19588044 acctggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtagc 19588103

                                                                            
Query: 343      caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
                | || ||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 19588104 cgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgacc 19588163

                         
Query: 403      cgttcctgc 411
                |||||||||
Sbjct: 19588164 cgttcctgc 19588172



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 152/189 (80%)
 Strand = Plus / Plus

                                                                            
Query: 223      ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
                |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 19614080 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 19614139

                                                                            
Query: 283      acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
                ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 19614140 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 19614199

                                                                            
Query: 343      caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
                |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 19614200 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 19614259

                         
Query: 403      cgttcctgc 411
                |||||||||
Sbjct: 19614260 cgttcctgc 19614268



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                            
Query: 407      cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 466
                |||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |||||
Sbjct: 19588422 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 19588481

                    
Query: 467      gtcg 470
                ||||
Sbjct: 19588482 gtcg 19588485



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 371      tgaccacacgaagtagccctgcacgttcgacccgttcctgc 411
                ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 19606190 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 19606230



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 513      ttctcgtggatcatgaccacagggttcttgta 544
                ||||| ||||||||||| | ||||||||||||
Sbjct: 19588811 ttctcatggatcatgacaatagggttcttgta 19588842
to top
>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 152/189 (80%)
 Strand = Plus / Plus

                                                                         
Query: 223   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
             |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 23562 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 23621

                                                                         
Query: 283   acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
             ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 23622 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 23681

                                                                         
Query: 343   caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
             |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 23682 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 23741

                      
Query: 403   cgttcctgc 411
             |||||||||
Sbjct: 23742 cgttcctgc 23750



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 371   tgaccacacgaagtagccctgcacgttcgacccgttcctgc 411
             ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 15672 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 15712
to top
>dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O11, full
            insert sequence
          Length = 1919

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 149/186 (80%)
 Strand = Plus / Minus

                                                                        
Query: 223  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 282
            |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 1504 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 1445

                                                                        
Query: 283  acctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtagc 342
            ||||||||||| || ||| | |||||||||||||  | ||||| || | || ||||||||
Sbjct: 1444 acctcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtagc 1385

                                                                        
Query: 343  caaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgacc 402
            |  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| |
Sbjct: 1384 cgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgatc 1325

                  
Query: 403  cgttcc 408
            ||||||
Sbjct: 1324 cgttcc 1319
to top
>ref|NM_190018.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 354  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1178 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1135
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 354      tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
                ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 40840163 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 40840120



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 235      cgccgccacggaggaagccg 254
                ||||||||||||||||||||
Sbjct: 37943132 cgccgccacggaggaagccg 37943151
to top
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0052O12
          Length = 167881

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                          
Query: 354    tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
              ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 142809 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 142766
to top
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506E04
          Length = 139934

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 354   tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
             ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 52269 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 52226
to top
>dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H04, full
            insert sequence
          Length = 1750

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 354  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1363 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1320
to top
>dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054O08, full
            insert sequence
          Length = 1906

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 354  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1362 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1319
to top
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 38      aacaatcgactccaaagaagcaga 61
               ||||||||||||||||||||||||
Sbjct: 1522793 aacaatcgactccaaagaagcaga 1522770
to top
>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 38    aacaatcgactccaaagaagcaga 61
             ||||||||||||||||||||||||
Sbjct: 73421 aacaatcgactccaaagaagcaga 73398
to top
>ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glycoprotein
            (Tb09.354.0090) partial mRNA
          Length = 1500

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 38   aacaatcgactccaaagaagcaga 61
            ||||||||||||||||||||||||
Sbjct: 1140 aacaatcgactccaaagaagcaga 1163
to top
>gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochondrial control region,
           partial sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 101 ccaaaaacaagaaccaatcatc 122
           ||||||||||||||||||||||
Sbjct: 108 ccaaaaacaagaaccaatcatc 87
to top
>gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial control region, partial
           sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 101 ccaaaaacaagaaccaatcatc 122
           ||||||||||||||||||||||
Sbjct: 107 ccaaaaacaagaaccaatcatc 86
to top
>ref|XM_473160.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 361  tgtccacgaatgaccacacgaagtagccc 389
            ||||||||| ||||||| |||||||||||
Sbjct: 1384 tgtccacgattgaccacgcgaagtagccc 1356
to top
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
             complete sequence
          Length = 130718

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 361   tgtccacgaatgaccacacgaagtagccc 389
             ||||||||| ||||||| |||||||||||
Sbjct: 19720 tgtccacgattgaccacgcgaagtagccc 19692
to top
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
              complete sequence
          Length = 158601

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 361    tgtccacgaatgaccacacgaagtagccc 389
              ||||||||| ||||||| |||||||||||
Sbjct: 126191 tgtccacgattgaccacgcgaagtagccc 126163
to top
>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
              Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes and
              two CpG islands, complete sequence
          Length = 187709

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 592    actggttctttaagtcaaaaa 612
              |||||||||||||||||||||
Sbjct: 182137 actggttctttaagtcaaaaa 182157
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 361      tgtccacgaatgaccacacgaagtagccc 389
                ||||||||| ||||||| |||||||||||
Sbjct: 25639993 tgtccacgattgaccacgcgaagtagccc 25639965
to top
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     aggnatgaacatttataatgtata 34
              ||| ||||||||||||||||||||
Sbjct: 335733 aggaatgaacatttataatgtata 335710
to top
>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full
            insert sequence
          Length = 1827

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 361  tgtccacgaatgaccacacgaagtagccc 389
            ||||||||| ||||||| |||||||||||
Sbjct: 1333 tgtccacgattgaccacgcgaagtagccc 1305
to top
>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full
            insert sequence
          Length = 2770

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 361  tgtccacgaatgaccacacgaagtagccc 389
            ||||||||| ||||||| |||||||||||
Sbjct: 2672 tgtccacgattgaccacgcgaagtagccc 2644
to top
>gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosome 7, complete sequence
          Length = 199480

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     aaattgaactcccatccaaa 105
              ||||||||||||||||||||
Sbjct: 145463 aaattgaactcccatccaaa 145482
to top
>ref|XM_463507.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 cgccgccacggaggaagccg 254
           ||||||||||||||||||||
Sbjct: 744 cgccgccacggaggaagccg 763
to top
>gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, complete sequence
          Length = 170539

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aaagaagcagatgtataaat 70
              ||||||||||||||||||||
Sbjct: 170337 aaagaagcagatgtataaat 170356
to top
>gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, complete sequence
          Length = 188060

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    aaagaagcagatgtataaat 70
             ||||||||||||||||||||
Sbjct: 88002 aaagaagcagatgtataaat 88021
to top
>gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 contig A, partial
             sequence
          Length = 55981

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   gaggaattcgaacatgtcca 366
             ||||||||||||||||||||
Sbjct: 34304 gaggaattcgaacatgtcca 34323
to top
>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence
          Length = 87839

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 543   tatttgacctggagatgctccagc 566
             |||||| |||||||||||||||||
Sbjct: 75334 tatttggcctggagatgctccagc 75311
to top
>gb|BC047222.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA
           (cDNA clone IMAGE:5300744), containing frame-shift
           errors
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 255 gagggatcagccacgctggc 274
to top
>gb|BC028065.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA
           (cDNA clone IMAGE:5199737), with apparent retained
           intron
          Length = 2055

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 292 gagggatcagccacgctggc 311
to top
>ref|NM_030770.1| Homo sapiens transmembrane protease, serine 5 (spinesin) (TMPRSS5),
           mRNA
          Length = 2265

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 530 gagggatcagccacgctggc 549
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    gccgaagcccatgcggtagc 342
              ||||||||||||||||||||
Sbjct: 449378 gccgaagcccatgcggtagc 449359
to top
>gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, complete sequence
          Length = 122770

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    aaaaacaagaaccaatcatc 122
              ||||||||||||||||||||
Sbjct: 101675 aaaaacaagaaccaatcatc 101656
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   gtcgacgccatagaggccgaagcc 331
             ||||||||||| ||||||||||||
Sbjct: 43446 gtcgacgccatggaggccgaagcc 43423
to top
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cgccgccacggaggaagccg 254
             ||||||||||||||||||||
Sbjct: 24076 cgccgccacggaggaagccg 24095
to top
>dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full
            insert sequence
          Length = 2439

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  cgccgccacggaggaagccg 254
            ||||||||||||||||||||
Sbjct: 1008 cgccgccacggaggaagccg 1027
to top
>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   gaacatgtccacgaatgacc 375
             ||||||||||||||||||||
Sbjct: 45149 gaacatgtccacgaatgacc 45130
to top
>dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015J08, full
           insert sequence
          Length = 2388

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 cgccgccacggaggaagccg 254
           ||||||||||||||||||||
Sbjct: 957 cgccgccacggaggaagccg 976
to top
>dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G1, complete
              sequence
          Length = 173509

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    gagggatcagccacgctggc 505
              ||||||||||||||||||||
Sbjct: 101959 gagggatcagccacgctggc 101940
to top
>dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-661I21, complete
              sequence
          Length = 187946

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    gagggatcagccacgctggc 505
              ||||||||||||||||||||
Sbjct: 179554 gagggatcagccacgctggc 179535
to top
>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence
          Length = 217178

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aaattgaactcccatccaaa 105
             ||||||||||||||||||||
Sbjct: 80566 aaattgaactcccatccaaa 80585
to top
>gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 95  tcccatccaaaaacaagaaccaat 118
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
to top
>gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 95  tcccatccaaaaacaagaaccaat 118
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
to top
>dbj|AB028140.1| Homo sapiens mRNA for spinesin, complete cds
          Length = 2265

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 530 gagggatcagccacgctggc 549
to top
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cgccgccacggaggaagccg 254
             ||||||||||||||||||||
Sbjct: 39408 cgccgccacggaggaagccg 39427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,909,807
Number of Sequences: 3902068
Number of extensions: 4909807
Number of successful extensions: 90993
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90731
Number of HSP's gapped (non-prelim): 253
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top