ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AES_RAT (P63003) Amino-terminal enhancer of split (Amino enhance... 30 3.3
2AES_MOUSE (P63002) Amino-terminal enhancer of split (Amino enhan... 30 3.3
3AES_HUMAN (Q08117) Amino-terminal enhancer of split (Amino enhan... 30 3.3
4GUN1_PERAE (P05522) Endoglucanase 1 precursor (EC 3.2.1.4) (Endo... 30 4.4
5SSRP_ANAMM (Q5P9M7) SsrA-binding protein 28 9.7

>AES_RAT (P63003) Amino-terminal enhancer of split (Amino enhancer of split)|
           (GRG protein) (ESP1 protein) (R-esp1)
          Length = 197

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 171 IVSTLRLLQASVHHRHIGC---ASGPVKHLRIFLDLHEPSFFNYFQVHHS---IKQLNGI 332
           I    +LLQA  H   + C   AS   +  R ++  +E S+    ++H     +K+LNGI
Sbjct: 29  IKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNGI 88

Query: 333 CASVV 347
           CA V+
Sbjct: 89  CAQVL 93



to top

>AES_MOUSE (P63002) Amino-terminal enhancer of split (Amino enhancer of split)|
           (GRG protein) (ESP1 protein) (Grg-5)
          Length = 197

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 171 IVSTLRLLQASVHHRHIGC---ASGPVKHLRIFLDLHEPSFFNYFQVHHS---IKQLNGI 332
           I    +LLQA  H   + C   AS   +  R ++  +E S+    ++H     +K+LNGI
Sbjct: 29  IKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNGI 88

Query: 333 CASVV 347
           CA V+
Sbjct: 89  CAQVL 93



to top

>AES_HUMAN (Q08117) Amino-terminal enhancer of split (Amino enhancer of split)|
           (GRG protein) (ESP1 protein) (Gp130-associated protein
           GAM)
          Length = 197

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 171 IVSTLRLLQASVHHRHIGC---ASGPVKHLRIFLDLHEPSFFNYFQVHHS---IKQLNGI 332
           I    +LLQA  H   + C   AS   +  R ++  +E S+    ++H     +K+LNGI
Sbjct: 29  IKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNGI 88

Query: 333 CASVV 347
           CA V+
Sbjct: 89  CAQVL 93



to top

>GUN1_PERAE (P05522) Endoglucanase 1 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Abscission cellulase 1)
          Length = 494

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 360 DWQLKLQKHRSHSVVLLNGEPGSS*RSWAR-EDLEISSNV*PVQMHNLCADDA 205
           D+ LK     S+S+ +  GEP +  R W R ED++   NV  V   N  +D A
Sbjct: 124 DYLLKASTATSNSLYVQVGEPNADHRCWERPEDMDTPRNVYKVSTQNPGSDVA 176



to top

>SSRP_ANAMM (Q5P9M7) SsrA-binding protein|
          Length = 149

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  IHIKVYNTCHRMNHRVQRVQKLL 167
           +HI  YN   R NH+  RV+KLL
Sbjct: 58  LHISEYNRADRKNHKPLRVRKLL 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,667,733
Number of Sequences: 219361
Number of extensions: 1159073
Number of successful extensions: 2106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2106
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top