ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags19a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 44 0.42
2gb|AC039056.7|AC039056 Homo sapiens chromosome 15 clone CTD-2382... 44 0.42
3gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, compl... 42 1.7
4emb|BX901891.12| Zebrafish DNA sequence from clone CH211-175N2 i... 42 1.7
5emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chrom... 42 1.7
6emb|AL356117.16| Human DNA sequence from clone RP11-258G21 on ch... 42 1.7
7gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, com... 42 1.7
8gb|AY102285.1| Homo sapiens RTN4 (RTN4) gene, complete sequence,... 40 6.5
9gb|AY616680.1| Danio rerio elastase A gene, promoter region 40 6.5
10gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete se... 40 6.5
11emb|BX255910.3| Mouse DNA sequence from clone RP23-398G11 on chr... 40 6.5
12emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in ... 40 6.5
13emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in... 40 6.5
14dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 40 6.5
15gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complet... 40 6.5
16gb|AC093165.5| Homo sapiens BAC clone RP11-1255P17 from 2, compl... 40 6.5
17gb|AC092461.6| Homo sapiens BAC clone RP11-232I22 from 2, comple... 40 6.5
18gb|AE014133.1| Streptococcus mutans UA159, complete genome 40 6.5
19emb|AL929202.6| Zebrafish DNA sequence from clone DKEY-147L19, c... 40 6.5
20gb|AF027335.1|AF027335 Equus caballus prostaglandin G/H synthase... 40 6.5
21emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g... 40 6.5
22dbj|AP006709.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.5
23dbj|AP004528.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 6.5

>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 404    tatttacagaaactttatggct 425
              ||||||||||||||||||||||
Sbjct: 907957 tatttacagaaactttatggct 907978



to top

>gb|AC039056.7|AC039056 Homo sapiens chromosome 15 clone CTD-2382E5 map 15q14, complete
             sequence
          Length = 176708

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 1     tgcatgtatcttacaaatatcctctc 26
             |||| |||||||||||||||||||||
Sbjct: 67943 tgcaggtatcttacaaatatcctctc 67968



to top

>gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, complete sequence
          Length = 261450

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    catgtatcttacaaatatcct 23
            |||||||||||||||||||||
Sbjct: 4134 catgtatcttacaaatatcct 4154



to top

>emb|BX901891.12| Zebrafish DNA sequence from clone CH211-175N2 in linkage group 1,
              complete sequence
          Length = 148678

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 395    tgtaatacatatttacagaaa 415
              |||||||||||||||||||||
Sbjct: 102762 tgtaatacatatttacagaaa 102742



to top

>emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chromosome X Contains a
             novel gene, a delta sleep inducing peptide, immunoreactor
             (DSIPI) pseudogene, the PABPC5 gene for poly(A) binding
             protein, cytoplasmic 5 and a CpG island, complete sequence
          Length = 160906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   aaaagtttacaacacttgtca 127
             |||||||||||||||||||||
Sbjct: 71442 aaaagtttacaacacttgtca 71462



to top

>emb|AL356117.16| Human DNA sequence from clone RP11-258G21 on chromosome 6 Contains part
             of the BAI3 gene for brain-specific angiogenesis inhibitor
             3, complete sequence
          Length = 127079

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    tcttacattcacataaaagtt 113
             |||||||||||||||||||||
Sbjct: 10813 tcttacattcacataaaagtt 10793



to top

>gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, complete sequence
          Length = 96984

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     catgtatcttacaaatatcct 23
             |||||||||||||||||||||
Sbjct: 92851 catgtatcttacaaatatcct 92831



to top

>gb|AY102285.1| Homo sapiens RTN4 (RTN4) gene, complete sequence, alternatively spliced
          Length = 90756

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   ttaaacatttgaggatattt 260
             ||||||||||||||||||||
Sbjct: 19179 ttaaacatttgaggatattt 19198



to top

>gb|AY616680.1| Danio rerio elastase A gene, promoter region
          Length = 2875

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 407  ttacagaaactttatggctt 426
            ||||||||||||||||||||
Sbjct: 1615 ttacagaaactttatggctt 1596



to top

>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence
          Length = 117113

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    aactttatggctttgattca 433
              ||||||||||||||||||||
Sbjct: 109575 aactttatggctttgattca 109556



to top

>emb|BX255910.3| Mouse DNA sequence from clone RP23-398G11 on chromosome 11 Contains a
              novel gene and the 3' end of the gene for a novel protein
              (E030025D05Rik), complete sequence
          Length = 179386

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    ttcacataaaagtttacaac 119
              ||||||||||||||||||||
Sbjct: 112556 ttcacataaaagtttacaac 112575



to top

>emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in linkage group 5, complete
              sequence
          Length = 156095

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tacaatcttacattcacata 107
              ||||||||||||||||||||
Sbjct: 155196 tacaatcttacattcacata 155215



to top

>emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in linkage group 5,
              complete sequence
          Length = 165838

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    ttacagaaactttatggctt 426
              ||||||||||||||||||||
Sbjct: 144409 ttacagaaactttatggctt 144390



to top

>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    tagaaatagtaagtaccctt 185
              ||||||||||||||||||||
Sbjct: 649174 tagaaatagtaagtaccctt 649193



to top

>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence
          Length = 175644

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    catatttacagaaactttat 421
              ||||||||||||||||||||
Sbjct: 100391 catatttacagaaactttat 100372



to top

>gb|AC093165.5| Homo sapiens BAC clone RP11-1255P17 from 2, complete sequence
          Length = 163772

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  ttaaacatttgaggatattt 260
            ||||||||||||||||||||
Sbjct: 1542 ttaaacatttgaggatattt 1523



to top

>gb|AC092461.6| Homo sapiens BAC clone RP11-232I22 from 2, complete sequence
          Length = 39674

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttaaacatttgaggatattt 260
             ||||||||||||||||||||
Sbjct: 39216 ttaaacatttgaggatattt 39197



to top

>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   acagaaactttatggctttg 428
             ||||||||||||||||||||
Sbjct: 88666 acagaaactttatggctttg 88647



to top

>emb|AL929202.6| Zebrafish DNA sequence from clone DKEY-147L19, complete sequence
          Length = 105855

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   tacaatcttacattcacata 107
            ||||||||||||||||||||
Sbjct: 1101 tacaatcttacattcacata 1120



to top

>gb|AF027335.1|AF027335 Equus caballus prostaglandin G/H synthase-2 gene, promoter and
            complete cds
          Length = 8479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  cattcaataaaacaactgaa 325
            ||||||||||||||||||||
Sbjct: 3019 cattcaataaaacaactgaa 3000



to top

>emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE
          Length = 133229

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  aactttatggctttgattca 433
            ||||||||||||||||||||
Sbjct: 4706 aactttatggctttgattca 4687



to top

>dbj|AP006709.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT41D19, TM0592,
            complete sequence
          Length = 96561

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  aactttatggctttgattca 433
            ||||||||||||||||||||
Sbjct: 9195 aactttatggctttgattca 9214



to top

>dbj|AP004528.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT03B03, TM0057b,
             complete sequence
          Length = 77452

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   aactttatggctttgattca 433
             ||||||||||||||||||||
Sbjct: 29455 aactttatggctttgattca 29436


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,526,783
Number of Sequences: 3902068
Number of extensions: 4526783
Number of successful extensions: 80683
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80610
Number of HSP's gapped (non-prelim): 73
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top