ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18l11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476192.1| Oryza sativa (japonica cultivar-group), predic... 309 6e-81
2dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 6e-81
3gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome... 220 4e-54
4gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome... 220 4e-54
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
6ref|NM_114655.3| Arabidopsis thaliana unknown protein AT3G47850 ... 46 0.14
7emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in l... 46 0.14
8gb|AY116964.1| Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, co... 46 0.14
9ref|XM_685788.1| PREDICTED: Danio rerio similar to phosphorylase... 46 0.14
10gb|AF428310.1|AF428310 Arabidopsis thaliana AT3g47850/T23J7_180 ... 46 0.14
11emb|BX822580.1|CNS0A765 Arabidopsis thaliana Full-length cDNA Co... 46 0.14
12emb|BX825399.1|CNS0A6EB Arabidopsis thaliana Full-length cDNA Co... 46 0.14
13emb|BX842231.1|CNS09YEF Arabidopsis thaliana Full-length cDNA Co... 46 0.14
14gb|AY086386.1| Arabidopsis thaliana clone 2485 mRNA, complete se... 46 0.14
15emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chr... 42 2.2
16gb|AC084377.5| Homo sapiens BAC clone RP11-478L9 from 2, complet... 42 2.2
17gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y,... 42 2.2
18gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome... 40 8.8
19gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 8.8
20gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence 40 8.8
21emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chr... 40 8.8
22emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.8
23gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, com... 40 8.8
24dbj|AK077205.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.8
25gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, comp... 40 8.8
26gb|AC124730.5| Mus musculus chromosome 5 clone RP23-286M3, compl... 40 8.8
27ref|NM_177607.2| Mus musculus RIKEN cDNA 4933430I17 gene (493343... 40 8.8
28gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, comple... 40 8.8
29gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 m... 40 8.8 
>ref|XM_476192.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  309 bits (156), Expect = 6e-81
 Identities = 346/408 (84%), Gaps = 6/408 (1%)
 Strand = Plus / Minus

                                                                       
Query: 238 tgtccttgatgcccggtacctgcgaagcgagacgggcttgctgtagagaaaggtgctgct 297
           ||||||||||  || ||| |||| ||||| ||||| |||||||| |||||||  ||||  
Sbjct: 932 tgtccttgatttccagtagctgcaaagcgggacggacttgctgtcgagaaagtcgctg-- 875

                                                                       
Query: 298 ggacttcttggagtgttgccagggttgtggttgcgagaaccaaatggagacctagcaaag 357
            |||||||||||||||  ||||  ||||| | | ||||||| || |||||||||||||| 
Sbjct: 874 -gacttcttggagtgtgaccagaattgtgttggagagaaccgaacggagacctagcaaaa 816

                                                                       
Query: 358 gaggctgttgaaggagaaatactgtggacatgatgcaagggacgtccaggagtgccctgg 417
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 815 gaggctgttgaaggagaaatactatgaacatgatgcaagggacgtccaggagtgccctgg 756

                                                                       
Query: 418 ttggaaccagcatctgactccccagcaaactcgctgaaattgacatcaacggtcattctg 477
           |||||||| || || ||||| |||||||  || || ||||||||||||||||||||||||
Sbjct: 755 ttggaacccgcctcagactcgccagcaacatcactaaaattgacatcaacggtcattctg 696

                                                                       
Query: 478 ggcacctgtctgggaa---cacttccatcagctgtgttttctggcggctgaggcatggca 534
           |||||| | || | ||    ||||||||| |||| ||||||||  ||||||||||  | |
Sbjct: 695 ggcaccagcctagaaatagaacttccatcggctgcgttttctgatggctgaggcacagta 636

                                                                       
Query: 535 gcacgcagcgaagcctgcatgctgcgtcttctgatttcttcttcggcatttaaaatctgc 594
           |  ||||  || ||||||||| ||||  | |||||||||||||| |||||||||||||||
Sbjct: 635 gtgcgcaatgaggcctgcatggtgcgcatcctgatttcttcttcagcatttaaaatctgc 576

                                                           
Query: 595 ttcagcatctgcacgagatcatgctttttcttattcaaggtatccagc 642
           |||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 575 ttcagcatctgcacaagatcatgctttttcttgtttaaagtatccagc 528



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 123  ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 182
            |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 1056 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 997

                                       
Query: 183  aggggaaggcgacgatgctacaaagtt 209
             ||||||||||| || |||||||||||
Sbjct: 996  gggggaaggcgaagaggctacaaagtt 970
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>dbj|AK109456.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D12, full
            insert sequence
          Length = 1535

 Score =  309 bits (156), Expect = 6e-81
 Identities = 346/408 (84%), Gaps = 6/408 (1%)
 Strand = Plus / Minus

                                                                        
Query: 238  tgtccttgatgcccggtacctgcgaagcgagacgggcttgctgtagagaaaggtgctgct 297
            ||||||||||  || ||| |||| ||||| ||||| |||||||| |||||||  ||||  
Sbjct: 1198 tgtccttgatttccagtagctgcaaagcgggacggacttgctgtcgagaaagtcgctg-- 1141

                                                                        
Query: 298  ggacttcttggagtgttgccagggttgtggttgcgagaaccaaatggagacctagcaaag 357
             |||||||||||||||  ||||  ||||| | | ||||||| || |||||||||||||| 
Sbjct: 1140 -gacttcttggagtgtgaccagaattgtgttggagagaaccgaacggagacctagcaaaa 1082

                                                                        
Query: 358  gaggctgttgaaggagaaatactgtggacatgatgcaagggacgtccaggagtgccctgg 417
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1081 gaggctgttgaaggagaaatactatgaacatgatgcaagggacgtccaggagtgccctgg 1022

                                                                        
Query: 418  ttggaaccagcatctgactccccagcaaactcgctgaaattgacatcaacggtcattctg 477
            |||||||| || || ||||| |||||||  || || ||||||||||||||||||||||||
Sbjct: 1021 ttggaacccgcctcagactcgccagcaacatcactaaaattgacatcaacggtcattctg 962

                                                                        
Query: 478  ggcacctgtctgggaa---cacttccatcagctgtgttttctggcggctgaggcatggca 534
            |||||| | || | ||    ||||||||| |||| ||||||||  ||||||||||  | |
Sbjct: 961  ggcaccagcctagaaatagaacttccatcggctgcgttttctgatggctgaggcacagta 902

                                                                        
Query: 535  gcacgcagcgaagcctgcatgctgcgtcttctgatttcttcttcggcatttaaaatctgc 594
            |  ||||  || ||||||||| ||||  | |||||||||||||| |||||||||||||||
Sbjct: 901  gtgcgcaatgaggcctgcatggtgcgcatcctgatttcttcttcagcatttaaaatctgc 842

                                                            
Query: 595  ttcagcatctgcacgagatcatgctttttcttattcaaggtatccagc 642
            |||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 841  ttcagcatctgcacaagatcatgctttttcttgtttaaagtatccagc 794



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 123  ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 182
            |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 1322 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 1263

                                       
Query: 183  aggggaaggcgacgatgctacaaagtt 209
             ||||||||||| || |||||||||||
Sbjct: 1262 gggggaaggcgaagaggctacaaagtt 1236
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>gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0043H23, complete sequence
          Length = 134097

 Score =  220 bits (111), Expect = 4e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                         
Query: 332   gagaaccaaatggagacctagcaaaggaggctgttgaaggagaaatactgtggacatgat 391
             ||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 39965 gagaaccgaacggagacctagcaaaagaggctgttgaaggagaaatactatgaacatgat 39906

                                                                         
Query: 392   gcaagggacgtccaggagtgccctggttggaaccagcatctgactccccagcaaactcgc 451
             |||||||||||||||||||||||||||||||||| || || ||||| |||||||  || |
Sbjct: 39905 gcaagggacgtccaggagtgccctggttggaacccgcctcagactcgccagcaacatcac 39846

                                                                         
Query: 452   tgaaattgacatcaacggtcattctgggcacctgtctgggaa---cacttccatcagctg 508
             | |||||||||||||||||||||||||||||| | || | ||    ||||||||| ||||
Sbjct: 39845 taaaattgacatcaacggtcattctgggcaccagcctagaaatagaacttccatcggctg 39786

                                                                         
Query: 509   tgttttctggcggctgaggcatggcagcacgcagcgaagcctgcatgctgcgtcttctga 568
              ||||||||  ||||||||||  | ||  ||||  || ||||||||| ||||  | ||||
Sbjct: 39785 cgttttctgatggctgaggcacagtagtgcgcaatgaggcctgcatggtgcgcatcctga 39726

                                      
Query: 569   tttcttcttcggcatttaaaatctg 593
             |||||||||| ||||||||||||||
Sbjct: 39725 tttcttcttcagcatttaaaatctg 39701



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 123   ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 182
             |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 40451 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 40392

                                        
Query: 183   aggggaaggcgacgatgctacaaagtt 209
              ||||||||||| || |||||||||||
Sbjct: 40391 gggggaaggcgaagaggctacaaagtt 40365



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 591   ctgcttcagcatctgcacgagatcatgctttttcttattcaaggtatccagc 642
             |||||||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 38625 ctgcttcagcatctgcacaagatcatgctttttcttgtttaaagtatccagc 38574
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>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08,
             complete sequence
          Length = 152527

 Score =  220 bits (111), Expect = 4e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                         
Query: 332   gagaaccaaatggagacctagcaaaggaggctgttgaaggagaaatactgtggacatgat 391
             ||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 75443 gagaaccgaacggagacctagcaaaagaggctgttgaaggagaaatactatgaacatgat 75384

                                                                         
Query: 392   gcaagggacgtccaggagtgccctggttggaaccagcatctgactccccagcaaactcgc 451
             |||||||||||||||||||||||||||||||||| || || ||||| |||||||  || |
Sbjct: 75383 gcaagggacgtccaggagtgccctggttggaacccgcctcagactcgccagcaacatcac 75324

                                                                         
Query: 452   tgaaattgacatcaacggtcattctgggcacctgtctgggaa---cacttccatcagctg 508
             | |||||||||||||||||||||||||||||| | || | ||    ||||||||| ||||
Sbjct: 75323 taaaattgacatcaacggtcattctgggcaccagcctagaaatagaacttccatcggctg 75264

                                                                         
Query: 509   tgttttctggcggctgaggcatggcagcacgcagcgaagcctgcatgctgcgtcttctga 568
              ||||||||  ||||||||||  | ||  ||||  || ||||||||| ||||  | ||||
Sbjct: 75263 cgttttctgatggctgaggcacagtagtgcgcaatgaggcctgcatggtgcgcatcctga 75204

                                      
Query: 569   tttcttcttcggcatttaaaatctg 593
             |||||||||| ||||||||||||||
Sbjct: 75203 tttcttcttcagcatttaaaatctg 75179



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 123   ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 182
             |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 75929 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 75870

                                        
Query: 183   aggggaaggcgacgatgctacaaagtt 209
              ||||||||||| || |||||||||||
Sbjct: 75869 gggggaaggcgaagaggctacaaagtt 75843



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 591   ctgcttcagcatctgcacgagatcatgctttttcttattcaaggtatccagc 642
             |||||||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 74103 ctgcttcagcatctgcacaagatcatgctttttcttgtttaaagtatccagc 74052
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  220 bits (111), Expect = 4e-54
 Identities = 227/265 (85%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                           
Query: 332     gagaaccaaatggagacctagcaaaggaggctgttgaaggagaaatactgtggacatgat 391
               ||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 7337188 gagaaccgaacggagacctagcaaaagaggctgttgaaggagaaatactatgaacatgat 7337129

                                                                           
Query: 392     gcaagggacgtccaggagtgccctggttggaaccagcatctgactccccagcaaactcgc 451
               |||||||||||||||||||||||||||||||||| || || ||||| |||||||  || |
Sbjct: 7337128 gcaagggacgtccaggagtgccctggttggaacccgcctcagactcgccagcaacatcac 7337069

                                                                           
Query: 452     tgaaattgacatcaacggtcattctgggcacctgtctgggaa---cacttccatcagctg 508
               | |||||||||||||||||||||||||||||| | || | ||    ||||||||| ||||
Sbjct: 7337068 taaaattgacatcaacggtcattctgggcaccagcctagaaatagaacttccatcggctg 7337009

                                                                           
Query: 509     tgttttctggcggctgaggcatggcagcacgcagcgaagcctgcatgctgcgtcttctga 568
                ||||||||  ||||||||||  | ||  ||||  || ||||||||| ||||  | ||||
Sbjct: 7337008 cgttttctgatggctgaggcacagtagtgcgcaatgaggcctgcatggtgcgcatcctga 7336949

                                        
Query: 569     tttcttcttcggcatttaaaatctg 593
               |||||||||| ||||||||||||||
Sbjct: 7336948 tttcttcttcagcatttaaaatctg 7336924



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 123     ttatgttgaactgggcgggcgatagtccctgaatacggaggaagagccaccggatgcagc 182
               |||||||||| |||| |||||||| |||||||| ||||||||||| || ||||| |||||
Sbjct: 7337674 ttatgttgaattgggtgggcgataatccctgaacacggaggaagaaccgccggaggcagc 7337615

                                          
Query: 183     aggggaaggcgacgatgctacaaagtt 209
                ||||||||||| || |||||||||||
Sbjct: 7337614 gggggaaggcgaagaggctacaaagtt 7337588



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                   
Query: 591     ctgcttcagcatctgcacgagatcatgctttttcttattcaaggtatccagc 642
               |||||||||||||||||| ||||||||||||||||| || || |||||||||
Sbjct: 7335848 ctgcttcagcatctgcacaagatcatgctttttcttgtttaaagtatccagc 7335797
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>ref|NM_114655.3| Arabidopsis thaliana unknown protein AT3G47850 mRNA, complete cds
          Length = 1235

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 555 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 601
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 659 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 613
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>emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in linkage group 21, complete
              sequence
          Length = 263757

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 590    tctgcttcagcatctgcacgaga 612
              |||||||||||||||||||||||
Sbjct: 234727 tctgcttcagcatctgcacgaga 234705
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>gb|AY116964.1| Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, complete cds
          Length = 969

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 555 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 601
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 570 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 524
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>ref|XM_685788.1| PREDICTED: Danio rerio similar to phosphorylase kinase alpha 1
            (LOC562402), mRNA
          Length = 3228

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 590  tctgcttcagcatctgcacgaga 612
            |||||||||||||||||||||||
Sbjct: 2170 tctgcttcagcatctgcacgaga 2148
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>gb|AF428310.1|AF428310 Arabidopsis thaliana AT3g47850/T23J7_180 mRNA, complete cds
          Length = 1160

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 555 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 601
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 621 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 575
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>emb|BX822580.1|CNS0A765 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB4ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1247

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 555 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 601
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 662 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 616
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>emb|BX825399.1|CNS0A6EB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZF10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1157

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 555 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 601
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 659 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 613
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>emb|BX842231.1|CNS09YEF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL88ZH01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1127

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 555 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 601
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 575 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 529
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>gb|AY086386.1| Arabidopsis thaliana clone 2485 mRNA, complete sequence
          Length = 1168

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 555 gctgcgtcttctgatttcttcttcggcatttaaaatctgcttcagca 601
           |||||||||| | | |||||| || ||||||||||||||||| ||||
Sbjct: 602 gctgcgtcttttcaattcttcctcagcatttaaaatctgcttaagca 556
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>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a
             novel pseudogene, complete sequence
          Length = 177796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 362   ctgttgaaggagaaatactgt 382
             |||||||||||||||||||||
Sbjct: 10524 ctgttgaaggagaaatactgt 10504
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>gb|AC084377.5| Homo sapiens BAC clone RP11-478L9 from 2, complete sequence
          Length = 152320

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   tgaaggagaaatactgtggac 386
             |||||||||||||||||||||
Sbjct: 95047 tgaaggagaaatactgtggac 95067
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>gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y, complete sequence
          Length = 116795

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 362  ctgttgaaggagaaatactgt 382
            |||||||||||||||||||||
Sbjct: 9312 ctgttgaaggagaaatactgt 9292
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>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence
          Length = 227709

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   aaaggaggctgttgaaggag 373
             ||||||||||||||||||||
Sbjct: 22831 aaaggaggctgttgaaggag 22812
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     tagcaaaggaggctgttgaa 369
               ||||||||||||||||||||
Sbjct: 1236726 tagcaaaggaggctgttgaa 1236745
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>gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence
          Length = 165901

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 475   ctgggcacctgtctgggaacactt 498
             ||||||||||| ||||||||||||
Sbjct: 15403 ctgggcacctgcctgggaacactt 15426
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>emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chromosome 4 Contains the
              Prpf4 gene for PRP4 pre-mRNA processing factor 4 homolog
              (yeast), three novel genes, the Bspry gene for B-box and
              SPRY domain containing protein, the Alad gene for delta
              aminolevulinate dehydratase, the Pole3 gene for polymerase
              (DNA directed) epsilon 3 (p17 subunit) and three CpG
              islands, complete sequence
          Length = 145776

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    gatgcagcaggggaaggcga 194
              ||||||||||||||||||||
Sbjct: 136117 gatgcagcaggggaaggcga 136136
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>emb|AL049746.1|ATT23J7 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7
          Length = 92493

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 555   gctgcgtcttctgatttcttcttcggcatttaaaatctgc 594
             |||||||||| | | |||||| || |||||||||||||||
Sbjct: 78946 gctgcgtcttttcaattcttcctcagcatttaaaatctgc 78985
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>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence
          Length = 177717

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     aaagtagcaattcaaagagg 53
              ||||||||||||||||||||
Sbjct: 154386 aaagtagcaattcaaagagg 154405
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>dbj|AK077205.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933430I17 product:weakly similar to
            HYPOTHETICAL 53.2 KDA PROTEIN [Macaca fascicularis], full
            insert sequence
          Length = 1785

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gatgcagcaggggaaggcga 194
            ||||||||||||||||||||
Sbjct: 1055 gatgcagcaggggaaggcga 1074
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>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence
          Length = 215022

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    aaaggaggctgttgaaggag 373
              ||||||||||||||||||||
Sbjct: 179733 aaaggaggctgttgaaggag 179714
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>gb|AC124730.5| Mus musculus chromosome 5 clone RP23-286M3, complete sequence
          Length = 194040

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    tcagctgtgttttctggcgg 521
              ||||||||||||||||||||
Sbjct: 174551 tcagctgtgttttctggcgg 174532
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>ref|NM_177607.2| Mus musculus RIKEN cDNA 4933430I17 gene (4933430I17Rik), mRNA
          Length = 1785

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gatgcagcaggggaaggcga 194
            ||||||||||||||||||||
Sbjct: 1055 gatgcagcaggggaaggcga 1074
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>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence
          Length = 194931

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    tcagctgtgttttctggcgg 521
              ||||||||||||||||||||
Sbjct: 172569 tcagctgtgttttctggcgg 172588
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>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence
          Length = 203821

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    tcagctgtgttttctggcgg 521
              ||||||||||||||||||||
Sbjct: 199879 tcagctgtgttttctggcgg 199898


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,579,422
Number of Sequences: 3902068
Number of extensions: 5579422
Number of successful extensions: 100203
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100107
Number of HSP's gapped (non-prelim): 96
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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