| Clone Name | rbags18l02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193112.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2184 Score = 313 bits (158), Expect = 4e-82 Identities = 424/512 (82%), Gaps = 3/512 (0%) Strand = Plus / Minus Query: 177 agagtatatggacaccaatagttatcacagcatgaactcatgtgtcacaaattgcacgtg 236 |||||||||||||| | || |||||||| || ||||||||||||||||| ||||| || Sbjct: 1902 agagtatatggacatcgctaattatcacaacacgaactcatgtgtcacaagttgcatgta 1843 Query: 237 ttgattccatctttgcaatctctcgtcaggttgttaaacgtttcaacctttgcctttgat 296 ||||||||||| |||||||| ||||||| |||||| || |||||||| | | ||||| | Sbjct: 1842 ttgattccatccttgcaatccctcgtcaagttgttgaaagtttcaacttgagtctttgct 1783 Query: 297 ctgtagaatacctcagtgtccacaatcaccttcatgtaggcatcgaacggcacatacttc 356 || ||||||||||| ||||||||||||||| |||| || |||||||||||||| | || Sbjct: 1782 ctatagaatacctctgtgtccacaatcaccctcatatatgcatcgaacggcactggcctc 1723 Query: 357 ccattattgatcgctgtcgtctcattgtgccactcgctcgtattcgaccaaagctcctta 416 ||| | | | || |||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 1722 ccaccacttagcgttgtcgtttcattgtaccactcacttgtattcgaccaaagctccttg 1663 Query: 417 taatcatcaagcaaatgcacatggtagtgtgacctgagcttgtcaaagtagtagtaaaat 476 |||||||||||||| |||||||| ||| |||||||||||| |||||||||| || || Sbjct: 1662 taatcatcaagcaagtgcacatgaaagtatgacctgagcttatcaaagtagttatagaac 1603 Query: 477 ggctcgttggttgcgatgtaaaggttccgccacg---gcttgataagcttggtgacctta 533 ||||| ||||| || ||||| ||||| | | || |||| ||||| || | |||||| Sbjct: 1602 ggctcattggtcgcaatgtagaggtttctcatcggctgcttaataagttttggaacctta 1543 Query: 534 tctacgatcgcgtcgggtgatgtgtccgcatccaagttgggatacatcttcttgttcatc 593 ||||| | || ||||||||||| || ||||| | ||| |||||||| | ||||||| Sbjct: 1542 tctacaagtgcctcgggtgatgtatcggcatctaggtttggatacatttgcttgttctgt 1483 Query: 594 gccttccaccctcggaccacatgcaaaccatcgtagtcccaatccatcctgcccgcaatc 653 |||||||||||||||| ||||||| |||||| || ||||| |||||||| || |||||| Sbjct: 1482 gccttccaccctcggatgacatgcagaccatcataatcccagtccatcctaccagcaatc 1423 Query: 654 tcagttacaatgttcatcagcctcttggactt 685 ||||| |||||||||||||||||||| ||||| Sbjct: 1422 tcagtgacaatgttcatcagcctcttcgactt 1391 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 102 aagatggtatgcctaatgacaaaccctggatgaagttcgcctgagttccattgcgccagc 161 |||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct: 1968 aagatgatatgcctaatgacaaaccctggatgaagttcctctgaattccaatgcgccagc 1909 Query: 162 c 162 | Sbjct: 1908 c 1908 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Minus Query: 33 attatacaaaaagaatggagggcacataatttagatgaacatgtaatg 80 |||| |||||||||||||| |||||||||| |||| ||| ||||||| Sbjct: 2046 attacacaaaaagaatggatggcacataatccagatcaacgtgtaatg 1999
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 313 bits (158), Expect = 4e-82 Identities = 424/512 (82%), Gaps = 3/512 (0%) Strand = Plus / Plus Query: 177 agagtatatggacaccaatagttatcacagcatgaactcatgtgtcacaaattgcacgtg 236 |||||||||||||| | || |||||||| || ||||||||||||||||| ||||| || Sbjct: 26245061 agagtatatggacatcgctaattatcacaacacgaactcatgtgtcacaagttgcatgta 26245120 Query: 237 ttgattccatctttgcaatctctcgtcaggttgttaaacgtttcaacctttgcctttgat 296 ||||||||||| |||||||| ||||||| |||||| || |||||||| | | ||||| | Sbjct: 26245121 ttgattccatccttgcaatccctcgtcaagttgttgaaagtttcaacttgagtctttgct 26245180 Query: 297 ctgtagaatacctcagtgtccacaatcaccttcatgtaggcatcgaacggcacatacttc 356 || ||||||||||| ||||||||||||||| |||| || |||||||||||||| | || Sbjct: 26245181 ctatagaatacctctgtgtccacaatcaccctcatatatgcatcgaacggcactggcctc 26245240 Query: 357 ccattattgatcgctgtcgtctcattgtgccactcgctcgtattcgaccaaagctcctta 416 ||| | | | || |||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 26245241 ccaccacttagcgttgtcgtttcattgtaccactcacttgtattcgaccaaagctccttg 26245300 Query: 417 taatcatcaagcaaatgcacatggtagtgtgacctgagcttgtcaaagtagtagtaaaat 476 |||||||||||||| |||||||| ||| |||||||||||| |||||||||| || || Sbjct: 26245301 taatcatcaagcaagtgcacatgaaagtatgacctgagcttatcaaagtagttatagaac 26245360 Query: 477 ggctcgttggttgcgatgtaaaggttccgccacg---gcttgataagcttggtgacctta 533 ||||| ||||| || ||||| ||||| | | || |||| ||||| || | |||||| Sbjct: 26245361 ggctcattggtcgcaatgtagaggtttctcatcggctgcttaataagttttggaacctta 26245420 Query: 534 tctacgatcgcgtcgggtgatgtgtccgcatccaagttgggatacatcttcttgttcatc 593 ||||| | || ||||||||||| || ||||| | ||| |||||||| | ||||||| Sbjct: 26245421 tctacaagtgcctcgggtgatgtatcggcatctaggtttggatacatttgcttgttctgt 26245480 Query: 594 gccttccaccctcggaccacatgcaaaccatcgtagtcccaatccatcctgcccgcaatc 653 |||||||||||||||| ||||||| |||||| || ||||| |||||||| || |||||| Sbjct: 26245481 gccttccaccctcggatgacatgcagaccatcataatcccagtccatcctaccagcaatc 26245540 Query: 654 tcagttacaatgttcatcagcctcttggactt 685 ||||| |||||||||||||||||||| ||||| Sbjct: 26245541 tcagtgacaatgttcatcagcctcttcgactt 26245572 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 102 aagatggtatgcctaatgacaaaccctggatgaagttcgcctgagttccattgcgccagc 161 |||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct: 26244995 aagatgatatgcctaatgacaaaccctggatgaagttcctctgaattccaatgcgccagc 26245054 Query: 162 c 162 | Sbjct: 26245055 c 26245055 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Plus Query: 33 attatacaaaaagaatggagggcacataatttagatgaacatgtaatg 80 |||| |||||||||||||| |||||||||| |||| ||| ||||||| Sbjct: 26244917 attacacaaaaagaatggatggcacataatccagatcaacgtgtaatg 26244964
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455H11 Length = 101607 Score = 313 bits (158), Expect = 4e-82 Identities = 424/512 (82%), Gaps = 3/512 (0%) Strand = Plus / Plus Query: 177 agagtatatggacaccaatagttatcacagcatgaactcatgtgtcacaaattgcacgtg 236 |||||||||||||| | || |||||||| || ||||||||||||||||| ||||| || Sbjct: 19689 agagtatatggacatcgctaattatcacaacacgaactcatgtgtcacaagttgcatgta 19748 Query: 237 ttgattccatctttgcaatctctcgtcaggttgttaaacgtttcaacctttgcctttgat 296 ||||||||||| |||||||| ||||||| |||||| || |||||||| | | ||||| | Sbjct: 19749 ttgattccatccttgcaatccctcgtcaagttgttgaaagtttcaacttgagtctttgct 19808 Query: 297 ctgtagaatacctcagtgtccacaatcaccttcatgtaggcatcgaacggcacatacttc 356 || ||||||||||| ||||||||||||||| |||| || |||||||||||||| | || Sbjct: 19809 ctatagaatacctctgtgtccacaatcaccctcatatatgcatcgaacggcactggcctc 19868 Query: 357 ccattattgatcgctgtcgtctcattgtgccactcgctcgtattcgaccaaagctcctta 416 ||| | | | || |||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 19869 ccaccacttagcgttgtcgtttcattgtaccactcacttgtattcgaccaaagctccttg 19928 Query: 417 taatcatcaagcaaatgcacatggtagtgtgacctgagcttgtcaaagtagtagtaaaat 476 |||||||||||||| |||||||| ||| |||||||||||| |||||||||| || || Sbjct: 19929 taatcatcaagcaagtgcacatgaaagtatgacctgagcttatcaaagtagttatagaac 19988 Query: 477 ggctcgttggttgcgatgtaaaggttccgccacg---gcttgataagcttggtgacctta 533 ||||| ||||| || ||||| ||||| | | || |||| ||||| || | |||||| Sbjct: 19989 ggctcattggtcgcaatgtagaggtttctcatcggctgcttaataagttttggaacctta 20048 Query: 534 tctacgatcgcgtcgggtgatgtgtccgcatccaagttgggatacatcttcttgttcatc 593 ||||| | || ||||||||||| || ||||| | ||| |||||||| | ||||||| Sbjct: 20049 tctacaagtgcctcgggtgatgtatcggcatctaggtttggatacatttgcttgttctgt 20108 Query: 594 gccttccaccctcggaccacatgcaaaccatcgtagtcccaatccatcctgcccgcaatc 653 |||||||||||||||| ||||||| |||||| || ||||| |||||||| || |||||| Sbjct: 20109 gccttccaccctcggatgacatgcagaccatcataatcccagtccatcctaccagcaatc 20168 Query: 654 tcagttacaatgttcatcagcctcttggactt 685 ||||| |||||||||||||||||||| ||||| Sbjct: 20169 tcagtgacaatgttcatcagcctcttcgactt 20200 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 102 aagatggtatgcctaatgacaaaccctggatgaagttcgcctgagttccattgcgccagc 161 |||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct: 19623 aagatgatatgcctaatgacaaaccctggatgaagttcctctgaattccaatgcgccagc 19682 Query: 162 c 162 | Sbjct: 19683 c 19683 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Plus Query: 33 attatacaaaaagaatggagggcacataatttagatgaacatgtaatg 80 |||| |||||||||||||| |||||||||| |||| ||| ||||||| Sbjct: 19545 attacacaaaaagaatggatggcacataatccagatcaacgtgtaatg 19592
>dbj|AK067310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102E11, full insert sequence Length = 2184 Score = 313 bits (158), Expect = 4e-82 Identities = 424/512 (82%), Gaps = 3/512 (0%) Strand = Plus / Minus Query: 177 agagtatatggacaccaatagttatcacagcatgaactcatgtgtcacaaattgcacgtg 236 |||||||||||||| | || |||||||| || ||||||||||||||||| ||||| || Sbjct: 1902 agagtatatggacatcgctaattatcacaacacgaactcatgtgtcacaagttgcatgta 1843 Query: 237 ttgattccatctttgcaatctctcgtcaggttgttaaacgtttcaacctttgcctttgat 296 ||||||||||| |||||||| ||||||| |||||| || |||||||| | | ||||| | Sbjct: 1842 ttgattccatccttgcaatccctcgtcaagttgttgaaagtttcaacttgagtctttgct 1783 Query: 297 ctgtagaatacctcagtgtccacaatcaccttcatgtaggcatcgaacggcacatacttc 356 || ||||||||||| ||||||||||||||| |||| || |||||||||||||| | || Sbjct: 1782 ctatagaatacctctgtgtccacaatcaccctcatatatgcatcgaacggcactggcctc 1723 Query: 357 ccattattgatcgctgtcgtctcattgtgccactcgctcgtattcgaccaaagctcctta 416 ||| | | | || |||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 1722 ccaccacttagcgttgtcgtttcattgtaccactcacttgtattcgaccaaagctccttg 1663 Query: 417 taatcatcaagcaaatgcacatggtagtgtgacctgagcttgtcaaagtagtagtaaaat 476 |||||||||||||| |||||||| ||| |||||||||||| |||||||||| || || Sbjct: 1662 taatcatcaagcaagtgcacatgaaagtatgacctgagcttatcaaagtagttatagaac 1603 Query: 477 ggctcgttggttgcgatgtaaaggttccgccacg---gcttgataagcttggtgacctta 533 ||||| ||||| || ||||| ||||| | | || |||| ||||| || | |||||| Sbjct: 1602 ggctcattggtcgcaatgtagaggtttctcatcggctgcttaataagttttggaacctta 1543 Query: 534 tctacgatcgcgtcgggtgatgtgtccgcatccaagttgggatacatcttcttgttcatc 593 ||||| | || ||||||||||| || ||||| | ||| |||||||| | ||||||| Sbjct: 1542 tctacaagtgcctcgggtgatgtatcggcatctaggtttggatacatttgcttgttctgt 1483 Query: 594 gccttccaccctcggaccacatgcaaaccatcgtagtcccaatccatcctgcccgcaatc 653 |||||||||||||||| ||||||| |||||| || ||||| |||||||| || |||||| Sbjct: 1482 gccttccaccctcggatgacatgcagaccatcataatcccagtccatcctaccagcaatc 1423 Query: 654 tcagttacaatgttcatcagcctcttggactt 685 ||||| |||||||||||||||||||| ||||| Sbjct: 1422 tcagtgacaatgttcatcagcctcttcgactt 1391 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 102 aagatggtatgcctaatgacaaaccctggatgaagttcgcctgagttccattgcgccagc 161 |||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct: 1968 aagatgatatgcctaatgacaaaccctggatgaagttcctctgaattccaatgcgccagc 1909 Query: 162 c 162 | Sbjct: 1908 c 1908 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Minus Query: 33 attatacaaaaagaatggagggcacataatttagatgaacatgtaatg 80 |||| |||||||||||||| |||||||||| |||| ||| ||||||| Sbjct: 2046 attacacaaaaagaatggatggcacataatccagatcaacgtgtaatg 1999
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 313 bits (158), Expect = 4e-82 Identities = 424/512 (82%), Gaps = 3/512 (0%) Strand = Plus / Plus Query: 177 agagtatatggacaccaatagttatcacagcatgaactcatgtgtcacaaattgcacgtg 236 |||||||||||||| | || |||||||| || ||||||||||||||||| ||||| || Sbjct: 136919 agagtatatggacatcgctaattatcacaacacgaactcatgtgtcacaagttgcatgta 136978 Query: 237 ttgattccatctttgcaatctctcgtcaggttgttaaacgtttcaacctttgcctttgat 296 ||||||||||| |||||||| ||||||| |||||| || |||||||| | | ||||| | Sbjct: 136979 ttgattccatccttgcaatccctcgtcaagttgttgaaagtttcaacttgagtctttgct 137038 Query: 297 ctgtagaatacctcagtgtccacaatcaccttcatgtaggcatcgaacggcacatacttc 356 || ||||||||||| ||||||||||||||| |||| || |||||||||||||| | || Sbjct: 137039 ctatagaatacctctgtgtccacaatcaccctcatatatgcatcgaacggcactggcctc 137098 Query: 357 ccattattgatcgctgtcgtctcattgtgccactcgctcgtattcgaccaaagctcctta 416 ||| | | | || |||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 137099 ccaccacttagcgttgtcgtttcattgtaccactcacttgtattcgaccaaagctccttg 137158 Query: 417 taatcatcaagcaaatgcacatggtagtgtgacctgagcttgtcaaagtagtagtaaaat 476 |||||||||||||| |||||||| ||| |||||||||||| |||||||||| || || Sbjct: 137159 taatcatcaagcaagtgcacatgaaagtatgacctgagcttatcaaagtagttatagaac 137218 Query: 477 ggctcgttggttgcgatgtaaaggttccgccacg---gcttgataagcttggtgacctta 533 ||||| ||||| || ||||| ||||| | | || |||| ||||| || | |||||| Sbjct: 137219 ggctcattggtcgcaatgtagaggtttctcatcggctgcttaataagttttggaacctta 137278 Query: 534 tctacgatcgcgtcgggtgatgtgtccgcatccaagttgggatacatcttcttgttcatc 593 ||||| | || ||||||||||| || ||||| | ||| |||||||| | ||||||| Sbjct: 137279 tctacaagtgcctcgggtgatgtatcggcatctaggtttggatacatttgcttgttctgt 137338 Query: 594 gccttccaccctcggaccacatgcaaaccatcgtagtcccaatccatcctgcccgcaatc 653 |||||||||||||||| ||||||| |||||| || ||||| |||||||| || |||||| Sbjct: 137339 gccttccaccctcggatgacatgcagaccatcataatcccagtccatcctaccagcaatc 137398 Query: 654 tcagttacaatgttcatcagcctcttggactt 685 ||||| |||||||||||||||||||| ||||| Sbjct: 137399 tcagtgacaatgttcatcagcctcttcgactt 137430 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 102 aagatggtatgcctaatgacaaaccctggatgaagttcgcctgagttccattgcgccagc 161 |||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct: 136853 aagatgatatgcctaatgacaaaccctggatgaagttcctctgaattccaatgcgccagc 136912 Query: 162 c 162 | Sbjct: 136913 c 136913 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Plus Query: 33 attatacaaaaagaatggagggcacataatttagatgaacatgtaatg 80 |||| |||||||||||||| |||||||||| |||| ||| ||||||| Sbjct: 136775 attacacaaaaagaatggatggcacataatccagatcaacgtgtaatg 136822
>gb|AY111874.1| Zea mays CL37213_1 mRNA sequence Length = 878 Score = 238 bits (120), Expect = 2e-59 Identities = 243/284 (85%) Strand = Plus / Minus Query: 402 gaccaaagctccttataatcatcaagcaaatgcacatggtagtgtgacctgagcttgtca 461 |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct: 395 gaccaaagctccttgtaatcatcaagcaaatggacatggaagtgtgacctgagcttgtcg 336 Query: 462 aagtagtagtaaaatggctcgttggttgcgatgtaaaggttccgccacggcttgataagc 521 ||||||| || |||||||| || ||||||||||| || | | | |||||| | |||| Sbjct: 335 aagtagttatagaatggctcattagttgcgatgtagagatctctcatcggcttaacaagc 276 Query: 522 ttggtgaccttatctacgatcgcgtcgggtgatgtgtccgcatccaagttgggatacatc 581 ||||| |||||||| || | ||| || || || ||||| | ||||| ||| |||||||| Sbjct: 275 ttggtcaccttatcaacaagcgcatcaggcgacgtgtcggaatccaggtttggatacatt 216 Query: 582 ttcttgttcatcgccttccaccctcggaccacatgcaaaccatcgtagtcccaatccatc 641 | ||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 215 tgcttgttctgcgccttccaccctcggacaacatgtaaaccatcgtaatcccaatccatc 156 Query: 642 ctgcccgcaatctcagttacaatgttcatcagcctcttggactt 685 || || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 155 ctacctgcaatctcagtcacaatgttcatcagtctcttggactt 112 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Minus Query: 209 tgaactcatgtgtcacaaattgcacgtgttgattccatctttgcaatctctcgtcaggtt 268 |||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||| Sbjct: 588 tgaactcatgtgtcacaagttgcacgtattgattccatctttgcaatcccttgtcaagtt 529 Query: 269 gttaaacgtttcaacctttgcctttgatctgtagaatacctcagtgtccacaatcacctt 328 ||| ||||| ||||||| || ||| |||||||| |||||||||||||||||||||||| | Sbjct: 528 gttgaacgtctcaacctgtgtcttcgatctgtaaaatacctcagtgtccacaatcaccct 469 Query: 329 catgtaggcatcgaa 343 ||||||||| ||||| Sbjct: 468 catgtaggcgtcgaa 454
>gb|AY108188.1| Zea mays PCO066395 mRNA sequence Length = 1439 Score = 238 bits (120), Expect = 2e-59 Identities = 243/284 (85%) Strand = Plus / Minus Query: 402 gaccaaagctccttataatcatcaagcaaatgcacatggtagtgtgacctgagcttgtca 461 |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct: 882 gaccaaagctccttgtaatcatcaagcaaatggacatggaagtgtgacctgagcttgtcg 823 Query: 462 aagtagtagtaaaatggctcgttggttgcgatgtaaaggttccgccacggcttgataagc 521 ||||||| || |||||||| || ||||||||||| || | | | |||||| | |||| Sbjct: 822 aagtagttatagaatggctcattagttgcgatgtagagatctctcatcggcttaacaagc 763 Query: 522 ttggtgaccttatctacgatcgcgtcgggtgatgtgtccgcatccaagttgggatacatc 581 ||||| |||||||| |||| ||| || || || ||||| | ||||| ||| |||||||| Sbjct: 762 ttggtcaccttatcaacgagcgcatcaggcgacgtgtcggaatccaggtttggatacatt 703 Query: 582 ttcttgttcatcgccttccaccctcggaccacatgcaaaccatcgtagtcccaatccatc 641 | ||||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 702 tgcttgttctgcgccttccaccctcggacaacatgtaaaccgtcgtaatcccaatccatc 643 Query: 642 ctgcccgcaatctcagttacaatgttcatcagcctcttggactt 685 || || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 642 ctacctgcaatctcagtcacaatgttcatcagtctcttggactt 599 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Minus Query: 209 tgaactcatgtgtcacaaattgcacgtgttgattccatctttgcaatctctcgtcaggtt 268 |||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||| Sbjct: 1075 tgaactcatgtgtcacaagttgcacgtattgattccatctttgcaatcccttgtcaagtt 1016 Query: 269 gttaaacgtttcaacctttgcctttgatctgtagaatacctcagtgtccacaatcacctt 328 ||| ||||| ||||||| || ||| |||||||| |||||||||||||||||||||||| | Sbjct: 1015 gttgaacgtctcaacctgtgtcttcgatctgtaaaatacctcagtgtccacaatcaccct 956 Query: 329 catgtaggcatcgaa 343 ||||||||| ||||| Sbjct: 955 catgtaggcgtcgaa 941
>dbj|AK061698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-D04, full insert sequence Length = 604 Score = 234 bits (118), Expect = 3e-58 Identities = 274/326 (84%) Strand = Plus / Minus Query: 177 agagtatatggacaccaatagttatcacagcatgaactcatgtgtcacaaattgcacgtg 236 |||||||||||||| | || |||||||| || ||||||||||||||||| ||||| || Sbjct: 409 agagtatatggacatcgctaattatcacaacacgaactcatgtgtcacaagttgcatgta 350 Query: 237 ttgattccatctttgcaatctctcgtcaggttgttaaacgtttcaacctttgcctttgat 296 ||||||||||| |||||||| ||||||| |||||| || |||||||| | | ||||| | Sbjct: 349 ttgattccatccttgcaatccctcgtcaagttgttgaaagtttcaacttgagtctttgct 290 Query: 297 ctgtagaatacctcagtgtccacaatcaccttcatgtaggcatcgaacggcacatacttc 356 || ||||||||||| ||||||||||||||| |||| || |||||||||||||| | || Sbjct: 289 ctatagaatacctctgtgtccacaatcaccctcatatatgcatcgaacggcactggcctc 230 Query: 357 ccattattgatcgctgtcgtctcattgtgccactcgctcgtattcgaccaaagctcctta 416 ||| | | | || |||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 229 ccaccacttagcgttgtcgtttcattgtaccactcacttgtattcgaccaaagctccttg 170 Query: 417 taatcatcaagcaaatgcacatggtagtgtgacctgagcttgtcaaagtagtagtaaaat 476 |||||||||||||| |||||||| ||| |||||||||||| |||||||||| || || Sbjct: 169 taatcatcaagcaagtgcacatgaaagtatgacctgagcttatcaaagtagttatagaac 110 Query: 477 ggctcgttggttgcgatgtaaaggtt 502 ||||| ||||| || ||||| ||||| Sbjct: 109 ggctcattggtcgcaatgtagaggtt 84 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 102 aagatggtatgcctaatgacaaaccctggatgaagttcgcctgagttccattgcgccagc 161 |||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct: 475 aagatgatatgcctaatgacaaaccctggatgaagttcctctgaattccaatgcgccagc 416 Query: 162 c 162 | Sbjct: 415 c 415 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Minus Query: 33 attatacaaaaagaatggagggcacataatttagatgaacatgtaatg 80 |||| |||||||||||||| |||||||||| |||| ||| ||||||| Sbjct: 553 attacacaaaaagaatggatggcacataatccagatcaacgtgtaatg 506
>gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequence Length = 103609 Score = 48.1 bits (24), Expect = 0.038 Identities = 48/56 (85%) Strand = Plus / Minus Query: 378 tcattgtgccactcgctcgtattcgaccaaagctccttataatcatcaagcaaatg 433 ||||||| ||| || |||| |||| ||| || ||||||||||||||||||||||| Sbjct: 80401 tcattgtaccattcactcgaattcccccacagttccttataatcatcaagcaaatg 80346
>gb|AC101527.12| Mus musculus chromosome 15, clone RP23-191D20, complete sequence Length = 193390 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 634 aatccatcctgcccgcaatctcagt 658 |||||||||||||| |||||||||| Sbjct: 178615 aatccatcctgcccccaatctcagt 178639
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 aaaatggctcgttggttgcga 492 ||||||||||||||||||||| Sbjct: 26815595 aaaatggctcgttggttgcga 26815615
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 atgaacatgtaatgcaataaa 87 ||||||||||||||||||||| Sbjct: 1918009 atgaacatgtaatgcaataaa 1918029
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516F12 Length = 146364 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 aaaatggctcgttggttgcga 492 ||||||||||||||||||||| Sbjct: 81648 aaaatggctcgttggttgcga 81668
>gb|AC119177.11| Mus musculus chromosome 15, clone RP24-559L16, complete sequence Length = 246547 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 634 aatccatcctgcccgcaatctcagt 658 |||||||||||||| |||||||||| Sbjct: 212903 aatccatcctgcccccaatctcagt 212879
>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence Length = 223030 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 cacatggtagtgtgacctgag 454 ||||||||||||||||||||| Sbjct: 140588 cacatggtagtgtgacctgag 140568
>emb|AL691454.15| Mouse DNA sequence from clone RP23-423P8 on chromosome 4 Contains the 3' end of the Astn2 gene for astrotactin 2 and the 3' end of the Pappa gene for pregnancy-associated plasma protein A, complete sequence Length = 204466 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 gagggcacataatttagatga 70 ||||||||||||||||||||| Sbjct: 132123 gagggcacataatttagatga 132143
>gb|AY570977.1| Xerophyta humilis clone D2 unknown mRNA Length = 515 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ctttgcctttgatctgtaga 303 |||||||||||||||||||| Sbjct: 206 ctttgcctttgatctgtaga 187
>gb|AC021744.14| Homo sapiens chromosome 8, clone RP11-284H18, complete sequence Length = 175636 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 aaagctccttataatcatca 425 |||||||||||||||||||| Sbjct: 15442 aaagctccttataatcatca 15423
>gb|AC104299.2| Homo sapiens chromosome 3 clone RP11-129K20, complete sequence Length = 181444 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 taatcatcaagcaaatgcac 436 |||||||||||||||||||| Sbjct: 123470 taatcatcaagcaaatgcac 123489
>emb|BX324136.11| Zebrafish DNA sequence from clone DKEY-31C13 in linkage group 10, complete sequence Length = 255306 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 agttatacattatacaaaaagaat 48 ||||| |||||||||||||||||| Sbjct: 102304 agttacacattatacaaaaagaat 102327
>gb|AC009878.9| Homo sapiens chromosome 15, clone RP11-345N11, complete sequence Length = 198372 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 atacattatacaaaaagaat 48 |||||||||||||||||||| Sbjct: 76337 atacattatacaaaaagaat 76318
>gb|AC022603.5|AC022603 Homo sapiens chromosome 15, clone RP11-20B10, complete sequence Length = 153223 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 atacattatacaaaaagaat 48 |||||||||||||||||||| Sbjct: 52474 atacattatacaaaaagaat 52493
>gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, complete sequence Length = 127025 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 29 atacattatacaaaaagaatggagggca 56 |||||| ||||||| ||||||||||||| Sbjct: 42676 atacatcatacaaacagaatggagggca 42649
>gb|AC021636.16| Homo sapiens chromosome 8, clone RP11-637F16, complete sequence Length = 148687 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 aaagctccttataatcatca 425 |||||||||||||||||||| Sbjct: 1011 aaagctccttataatcatca 1030
>dbj|AP004926.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079c, complete sequence Length = 109022 Score = 40.1 bits (20), Expect = 9.4 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 56 acataatttagatgaa-catgtaatgcaataaatga 90 |||||||||| ||||| ||||| ||||||||||||| Sbjct: 86322 acataatttatatgaatcatgtgatgcaataaatga 86357
>emb|AL591366.15| Mouse DNA sequence from clone RP23-80N1 on chromosome 11, complete sequence Length = 117612 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 atggtatgcctaatgacaaa 124 |||||||||||||||||||| Sbjct: 35991 atggtatgcctaatgacaaa 36010 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,387,888 Number of Sequences: 3902068 Number of extensions: 5387888 Number of successful extensions: 93191 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 93051 Number of HSP's gapped (non-prelim): 141 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)