ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18k23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009215.1| Triticum aestivum clone wle1n.pk0059.e6:fis, full... 58 1e-05
2gb|BT009114.1| Triticum aestivum clone wl1.pk0012.c2:fis, full i... 58 1e-05
3gb|AC104911.10| Mus musculus chromosome 3, clone RP23-427B4, com... 38 9.5
4ref|XM_879368.1| PREDICTED: Bos taurus similar to TAF6-like RNA ... 38 9.5
5ref|NM_032583.3| Homo sapiens ATP-binding cassette, sub-family C... 38 9.5
6ref|NM_145186.2| Homo sapiens ATP-binding cassette, sub-family C... 38 9.5
7ref|NM_033151.3| Homo sapiens ATP-binding cassette, sub-family C... 38 9.5
8gb|AY358497.1| Homo sapiens clone DNA35599 HYDRL-14 (UNQ210) mRN... 38 9.5
9gb|AC162611.2| Mus musculus chromosome 3, clone RP24-86E1, compl... 38 9.5
10gb|AC016383.11| Homo sapiens chromosome 18, clone RP11-25O3, com... 38 9.5
11gb|AF411579.1| Homo sapiens ATP-binding cassette protein C11 iso... 38 9.5
12gb|AF367202.1|AF367202 Homo sapiens ATP-binding cassette protein... 38 9.5
13gb|AC011155.13| Homo sapiens chromosome 18, clone RP11-7K9, comp... 38 9.5
14gb|S60737.1| T-cell receptor beta 2 chain D region...T-cell rece... 38 9.5
15gb|AY040219.1| Homo sapiens ATP-binding cassette transporter sub... 38 9.5
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
17gb|AC096996.2| Homo sapiens chromosome 16 clone RP11-3M1, comple... 38 9.5
18gb|AF352582.1|AF352582 Homo sapiens ATP-binding cassette transpo... 38 9.5
19gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, com... 38 9.5
20dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
21dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
22dbj|AP001741.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 9.5
23emb|AL117406.1|HSM801041 Homo sapiens mRNA; cDNA DKFZp434P2035 (... 38 9.5
24gb|M61124.1|RABTCRB2 Rabbit germline T cell receptor beta 2 chai... 38 9.5
25dbj|AP001610.1| Homo sapiens genomic DNA, chromosome 21, clone:C... 38 9.5 
>gb|BT009215.1| Triticum aestivum clone wle1n.pk0059.e6:fis, full insert mRNA
            sequence
          Length = 1514

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 158  gctggtgctcagatatgatcgcaaactactttt 190
            ||||||||||||||||||||||||||| |||||
Sbjct: 1251 gctggtgctcagatatgatcgcaaactgctttt 1219



 Score = 50.1 bits (25), Expect = 0.002
 Identities = 70/84 (83%), Gaps = 3/84 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgctggtaaaacttttcc-aggacaggaatgtgagganncttnaggtgtcttaancgggg 59
            |||||||||||||||||| |||||| ||||| |||||   || ||| | ||||| ||| |
Sbjct: 1417 tgctggtaaaacttttccaaggacaagaatgcgaggattattcaggagccttaaacggtg 1358

                                    
Query: 60   --tcaacacccaaggaaattgagg 81
              ||||||||||||||||| ||||
Sbjct: 1357 tctcaacacccaaggaaatcgagg 1334
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>gb|BT009114.1| Triticum aestivum clone wl1.pk0012.c2:fis, full insert mRNA sequence
          Length = 1264

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 158  gctggtgctcagatatgatcgcaaactactttt 190
            ||||||||||||||||||||||||||| |||||
Sbjct: 1016 gctggtgctcagatatgatcgcaaactgctttt 984



 Score = 48.1 bits (24), Expect = 0.010
 Identities = 107/136 (78%), Gaps = 3/136 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgctggtaaaacttttcca-ggacaggaatgtgagganncttnaggtgtcttaancgggg 59
            ||||||||||||||||||| ||||| ||||| ||| |   || ||| | |||||  || |
Sbjct: 1183 tgctggtaaaacttttccaaggacaagaatgcgagaattattcaggagccttaaatggtg 1124

                                                                        
Query: 60   tc--aacacccaaggaaattgaggngtncgtcacttaacctactccggntnaagctncng 117
            ||  ||||||||||||||| |||| |   | |||||||||||||| || | ||||| | |
Sbjct: 1123 tcttaacacccaaggaaatcgaggtgcctgccacttaacctactcaggctaaagctcctg 1064

                            
Query: 118  ccntgcaacaaaatta 133
               |||||||||||||
Sbjct: 1063 gtatgcaacaaaatta 1048
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>gb|AC104911.10| Mus musculus chromosome 3, clone RP23-427B4, complete sequence
          Length = 190932

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   gctggtgctcagatatgat 176
             |||||||||||||||||||
Sbjct: 48849 gctggtgctcagatatgat 48831
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>ref|XM_879368.1| PREDICTED: Bos taurus similar to TAF6-like RNA polymerase II
            p300/CBP-associated factor-associated factor 65 kDa
            subunit 6L (PCAF-associated factor 65 alpha)
            (PAF65-alpha), transcript variant 3 (LOC531109), mRNA
          Length = 4278

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 18   caggacaggaatgtgagga 36
            |||||||||||||||||||
Sbjct: 3932 caggacaggaatgtgagga 3914
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>ref|NM_032583.3| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 11
            (ABCC11), transcript variant 1, mRNA
          Length = 4576

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 4345 ggggggtggggattgctgg 4363
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>ref|NM_145186.2| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 11
            (ABCC11), transcript variant 3, mRNA
          Length = 4462

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 4231 ggggggtggggattgctgg 4249
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>ref|NM_033151.3| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 11
            (ABCC11), transcript variant 2, mRNA
          Length = 4862

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 4631 ggggggtggggattgctgg 4649
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>gb|AY358497.1| Homo sapiens clone DNA35599 HYDRL-14 (UNQ210) mRNA, complete cds
          Length = 3106

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 137  cgggcgtggggggtgggga 155
            |||||||||||||||||||
Sbjct: 2972 cgggcgtggggggtgggga 2954
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>gb|AC162611.2| Mus musculus chromosome 3, clone RP24-86E1, complete sequence
          Length = 229643

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 158   gctggtgctcagatatgat 176
             |||||||||||||||||||
Sbjct: 77031 gctggtgctcagatatgat 77049
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>gb|AC016383.11| Homo sapiens chromosome 18, clone RP11-25O3, complete sequence
          Length = 178624

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 10  aacttttccaggacaggaa 28
           |||||||||||||||||||
Sbjct: 362 aacttttccaggacaggaa 344
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>gb|AF411579.1| Homo sapiens ATP-binding cassette protein C11 isoform A (ABCC11)
            mRNA, complete cds; alternatively spliced
          Length = 4476

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 4245 ggggggtggggattgctgg 4263
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>gb|AF367202.1|AF367202 Homo sapiens ATP-binding cassette protein C11 (ABCC11) mRNA, complete
            cds
          Length = 4590

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 4359 ggggggtggggattgctgg 4377
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>gb|AC011155.13| Homo sapiens chromosome 18, clone RP11-7K9, complete sequence
          Length = 158371

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     aacttttccaggacaggaa 28
              |||||||||||||||||||
Sbjct: 120350 aacttttccaggacaggaa 120332
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>gb|S60737.1| T-cell receptor beta 2 chain D region...T-cell receptor beta 2 chain
            J region [rabbits, Genomic, 9 genes, 2601 nt]
          Length = 2601

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 138  gggcgtggggggtggggat 156
            |||||||||||||||||||
Sbjct: 1938 gggcgtggggggtggggat 1956
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>gb|AY040219.1| Homo sapiens ATP-binding cassette transporter sub-family C member 11
            (ABCC11) mRNA, complete cds
          Length = 4862

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 4631 ggggggtggggattgctgg 4649
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 12      cttttccaggacaggaatg 30
               |||||||||||||||||||
Sbjct: 1395301 cttttccaggacaggaatg 1395319
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>gb|AC096996.2| Homo sapiens chromosome 16 clone RP11-3M1, complete sequence
          Length = 194632

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 144    ggggggtggggattgctgg 162
              |||||||||||||||||||
Sbjct: 153042 ggggggtggggattgctgg 153024
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>gb|AF352582.1|AF352582 Homo sapiens ATP-binding cassette transporter MRP8 mRNA, complete cds
          Length = 4492

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 4380 ggggggtggggattgctgg 4398
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>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence
          Length = 183088

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 144   ggggggtggggattgctgg 162
             |||||||||||||||||||
Sbjct: 90628 ggggggtggggattgctgg 90646
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0038F22
          Length = 101666

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 12   cttttccaggacaggaatg 30
            |||||||||||||||||||
Sbjct: 2587 cttttccaggacaggaatg 2605
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     cttttccaggacaggaatg 30
              |||||||||||||||||||
Sbjct: 103840 cttttccaggacaggaatg 103858
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>dbj|AP001741.1| Homo sapiens genomic DNA, chromosome 21q, section 85/105
          Length = 39322

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 140   gcgtggggggtggggattg 158
             |||||||||||||||||||
Sbjct: 12351 gcgtggggggtggggattg 12333
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>emb|AL117406.1|HSM801041 Homo sapiens mRNA; cDNA DKFZp434P2035 (from clone DKFZp434P2035)
          Length = 1824

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 144  ggggggtggggattgctgg 162
            |||||||||||||||||||
Sbjct: 1581 ggggggtggggattgctgg 1599
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>gb|M61124.1|RABTCRB2 Rabbit germline T cell receptor beta 2 chain gene DJ region
          Length = 2601

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 138  gggcgtggggggtggggat 156
            |||||||||||||||||||
Sbjct: 1938 gggcgtggggggtggggat 1956
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>dbj|AP001610.1| Homo sapiens genomic DNA, chromosome 21, clone:CIT2533B8, MX1-D21S171
              region, complete sequence
          Length = 132110

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 140    gcgtggggggtggggattg 158
              |||||||||||||||||||
Sbjct: 109378 gcgtggggggtggggattg 109360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,414,974
Number of Sequences: 3902068
Number of extensions: 1414974
Number of successful extensions: 86787
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86736
Number of HSP's gapped (non-prelim): 50
length of query: 192
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 170
effective length of database: 17,147,199,772
effective search space: 2915023961240
effective search space used: 2915023961240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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