ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18k21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine syntha... 91 2e-18
2RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine syntha... 89 9e-18
3RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine syntha... 87 4e-17
4RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine syntha... 86 1e-16
5YBC5_CHLVI (O50310) Hypothetical RNA pseudouridine synthase in b... 84 4e-16
6RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine syntha... 81 3e-15
7RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine syntha... 79 1e-14
8RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine syntha... 79 1e-14
9YLYB_BACSU (Q45480) Hypothetical RNA pseudouridine synthase ylyB... 78 3e-14
10RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine syntha... 76 1e-13
11RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine syntha... 75 1e-13
12RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine syntha... 75 1e-13
13RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine syntha... 75 1e-13
14RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine syntha... 75 1e-13
15RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine syntha... 72 2e-12
16YMDA_CHLAU (Q45826) Hypothetical RNA pseudouridine synthase in m... 70 8e-12
17RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine syntha... 70 8e-12
18RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine syntha... 67 4e-11
19RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine syntha... 67 4e-11
20RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine syntha... 67 5e-11
21RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine syntha... 66 8e-11
22RLUD_RALSO (Q8XYX8) Ribosomal large subunit pseudouridine syntha... 65 1e-10
23RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine syntha... 65 2e-10
24RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine syntha... 62 1e-09
25YJBO_BACSU (O31613) Hypothetical RNA pseudouridine synthase yjbO... 62 2e-09
26RLUD_XYLFT (Q87AR7) Ribosomal large subunit pseudouridine syntha... 62 2e-09
27RLUD_XYLFA (Q9PET9) Ribosomal large subunit pseudouridine syntha... 61 3e-09
28RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine syntha... 61 4e-09
29RLUD_BLOFL (P59838) Ribosomal large subunit pseudouridine syntha... 61 4e-09
30Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_... 59 2e-08
31RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine syntha... 58 2e-08
32RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine syntha... 58 2e-08
33Y1629_SYNY3 (P74346) Hypothetical RNA pseudouridine synthase slr... 58 3e-08
34RLUC_VIBPA (Q87N15) Ribosomal large subunit pseudouridine syntha... 57 4e-08
35RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine syntha... 57 7e-08
36RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine syntha... 57 7e-08
37RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine syntha... 57 7e-08
38Y1758_AQUAE (O67638) Hypothetical RNA pseudouridine synthase aq_... 56 9e-08
39Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP07... 56 1e-07
40RLUD_BUCBP (Q89AD9) Ribosomal large subunit pseudouridine syntha... 56 1e-07
41Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1... 56 1e-07
42Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1... 56 1e-07
43RLUC_VIBCH (Q9KQH0) Ribosomal large subunit pseudouridine syntha... 55 2e-07
44RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine syntha... 54 3e-07
45RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine syntha... 54 4e-07
46RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine syntha... 54 4e-07
47RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine syntha... 54 6e-07
48RLUC_VIBVU (Q8D8G1) Ribosomal large subunit pseudouridine syntha... 53 7e-07
49RLUC_HAEIN (P44433) Ribosomal large subunit pseudouridine syntha... 51 3e-06
50TRUC_ECO57 (Q8X6T6) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 50 5e-06
51RLUC_YERPE (Q8ZFU1) Ribosomal large subunit pseudouridine syntha... 50 6e-06
52YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT... 50 8e-06
53RLUC_BUCAP (Q8K9J8) Ribosomal large subunit pseudouridine syntha... 50 8e-06
54TRUC_SHIFL (P0AA42) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 50 8e-06
55TRUC_ECOLI (P0AA41) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 50 8e-06
56TRUC_ECOL6 (Q8FEF9) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 50 8e-06
57RLUC_BUCAI (P57430) Ribosomal large subunit pseudouridine syntha... 49 1e-05
58Y1592_SYNY3 (P72970) Hypothetical RNA pseudouridine synthase slr... 48 3e-05
59Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG20... 47 5e-05
60RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine syntha... 47 7e-05
61RLUC_RICCN (Q92IS6) Ribosomal large subunit pseudouridine syntha... 47 7e-05
62RLUC_PSEAE (Q9HZM9) Ribosomal large subunit pseudouridine syntha... 47 7e-05
63RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine syntha... 46 1e-04
64RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine syntha... 46 1e-04
65RLUA_HAEDU (P59831) Ribosomal large subunit pseudouridine syntha... 46 1e-04
66RLUD_BORBU (P70870) Ribosomal large subunit pseudouridine syntha... 46 1e-04
67Y209_MYCGE (P47451) Hypothetical RNA pseudouridine synthase MG20... 45 2e-04
68RLUC_RICPR (Q9ZDR7) Ribosomal large subunit pseudouridine syntha... 45 2e-04
69TRUC_SALTI (Q8Z439) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 45 2e-04
70RLUA_HAEIN (P44782) Ribosomal large subunit pseudouridine syntha... 45 3e-04
71RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine syntha... 44 3e-04
72RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine syntha... 44 3e-04
73RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine syntha... 44 3e-04
74RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine syntha... 44 3e-04
75TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 44 5e-04
76RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine syntha... 44 5e-04
77TRUC_YERPE (Q8ZH72) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 44 5e-04
78YK27_CAEEL (O16686) Hypothetical protein K07E8.7 in chromosome IV 44 6e-04
79TRUC_SALTY (Q8ZMD5) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 44 6e-04
80TRUC_VIBVU (Q8DBG5) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 43 0.001
81RLUA_VIBCH (Q9KP71) Ribosomal large subunit pseudouridine syntha... 42 0.001
82TRUC_VIBPA (Q87MD4) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 42 0.002
83TRUC_VIBCH (Q9KTL4) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 42 0.002
84Y956_HELPY (O25610) Hypothetical RNA pseudouridine synthase HP09... 42 0.002
85TRUC_HAEDU (P59840) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 42 0.002
86RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine syntha... 42 0.002
87RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine syntha... 42 0.002
88TRUC_PASMU (Q9CNF3) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 41 0.004
89Y956_HELPJ (Q9ZKP5) Hypothetical RNA pseudouridine synthase jhp_... 41 0.004
90Y505_ZYMMO (O66114) Hypothetical RNA pseudouridine synthase ZMO0... 41 0.004
91RLUC_BUCBP (Q89AH2) Ribosomal large subunit pseudouridine syntha... 40 0.007
92RIB2_YEAST (Q12362) DRAP deaminase 39 0.011
93YD36C_YEAST (Q12069) Hypothetical 53.4 kDa protein in PRP9-NAT1 ... 39 0.015
94Y042_HAEIN (P43930) Hypothetical RNA pseudouridine synthase HI00... 39 0.019
95YA32_SCHPO (Q09709) Hypothetical protein C18B11.02c in chromosome I 38 0.025
96PUS6_YEAST (P53294) Pseudouridylate synthase 6 (EC 5.4.99.-) (Ps... 35 0.16
97Y370_MYCGE (P47610) Hypothetical RNA pseudouridine synthase MG37... 35 0.21
98Y714_MYCCT (P45614) Hypothetical RNA pseudouridine synthase MCAP... 34 0.36
99TRUC_HAEIN (P44197) tRNA pseudouridine synthase C (EC 5.4.99.-) ... 33 0.61
100PUS5_ASHGO (Q750S3) Pseudouridylate synthase PUS5 (EC 5.4.99.-) ... 33 0.61
101Y347_HELPY (O25114) Hypothetical RNA pseudouridine synthase HP03... 33 1.0
102I10R2_MOUSE (Q61190) Interleukin-10 receptor beta chain precurso... 32 1.4
103Y548_MYCPN (P75230) Hypothetical RNA pseudouridine synthase MG37... 32 1.8
104VG48_SHV21 (Q01033) Hypothetical gene 48 protein 32 1.8
105Y347_HELPJ (Q9ZMA1) Hypothetical RNA pseudouridine synthase jhp_... 32 1.8
106PUS5_YEAST (Q06244) Pseudouridylate synthase PUS5 (EC 5.4.99.-) ... 31 3.0
107SAK1_SCHPO (P48383) Protein sak1 31 4.0
108YRM2_CAEEL (Q09600) Hypothetical RING finger protein R06F6.2 in ... 31 4.0
109PUS5_CANGA (Q6FS81) Pseudouridylate synthase PUS5 (EC 5.4.99.-) ... 30 6.7 
>RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 45/100 (45%), Positives = 59/100 (59%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           +  RL TGRTHQIR H  YL +PLLGD  YGG         R R P+    D++ ++   
Sbjct: 224 IRLRLETGRTHQIRVHMSYLQHPLLGDAAYGG---------RARIPAGASEDVTAMIRNF 274

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
           DR  LHA +L F+HP +G+ +EF  P PDD  E+ + LRR
Sbjct: 275 DRQALHAVMLRFEHPITGEEMEFHAPVPDDMVELTETLRR 314
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>RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 89.4 bits (220), Expect = 9e-18
 Identities = 45/102 (44%), Positives = 60/102 (58%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           +  RL TGRTHQIR H  YL +PLLGD  YGG         R R P+    +L++++   
Sbjct: 224 IRLRLETGRTHQIRVHMSYLQHPLLGDTAYGG---------RARIPTGASQELTDMIRGF 274

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVT 364
           DR  LHA +L F+HP +G+ LEF  P PDD   + + LR+ T
Sbjct: 275 DRQALHAVMLRFEHPITGEELEFHAPVPDDMVAMTEALRKDT 316
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>RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 46/106 (43%), Positives = 58/106 (54%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  YL +PLLGD  YGG         R R P     +L+ ++   DR 
Sbjct: 227 RLETGRTHQIRVHMAYLQHPLLGDTAYGG---------RARIPKGATEELTEMIRDFDRQ 277

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEGQD 343
            LHA +L F+HP +G+ LEF  P PDD  E+   LR     N  ++
Sbjct: 278 ALHAVMLKFEHPVTGEELEFHAPVPDDMVEMTLALREDAKLNRTEE 323
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>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 42/96 (43%), Positives = 56/96 (58%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PLLGD+TYGG         RPR P     D   ++    R 
Sbjct: 226 RLETGRTHQIRVHMAHIAHPLLGDQTYGG---------RPRPPKNASEDFMEVLRNFKRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP +G+ +E+  P PDDF E+L+ L+
Sbjct: 277 ALHAVMLRLAHPITGEMMEWYAPLPDDFVELLNALK 312
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>YBC5_CHLVI (O50310) Hypothetical RNA pseudouridine synthase in bchI 5'region|
           (EC 5.4.99.-) (RNA-uridine isomerase) (RNA
           pseudouridylate synthase)
          Length = 327

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 45/108 (41%), Positives = 63/108 (58%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +L++  L TGRTHQIR H ++LG+ +LGDETYGG    TL        SK      NL+ 
Sbjct: 225 SLMDVTLHTGRTHQIRVHLQHLGHSILGDETYGGATPRTLPF------SKSEPFTRNLLE 278

Query: 495 KIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNE 352
            + R  LHA  L F+ P +G+ L FS P P+D   VL+++R V   ++
Sbjct: 279 LMSRQALHAQTLRFRQPTTGEPLSFSAPLPEDMELVLEKIRTVMTASQ 326
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>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 40/96 (41%), Positives = 55/96 (57%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PLLGD+TYGG         RPR P     +L   +    R 
Sbjct: 226 RLETGRTHQIRVHMAHIAHPLLGDQTYGG---------RPRPPKNASEELMQTLRDFKRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP +G+ +E+  P P DF E+++ L+
Sbjct: 277 ALHAIMLRLAHPITGELMEWHAPLPTDFVELVEALK 312
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>RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 39/96 (40%), Positives = 54/96 (56%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PL+GD+ YGG         RPR P     +  + + K DR 
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDQVYGG---------RPRPPKGASEEFISTLRKFDRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP SG  +E+  P P D  +++D +R
Sbjct: 277 ALHATMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMR 312
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>RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 39/96 (40%), Positives = 54/96 (56%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PL+GD+ YGG         RPR P     +  + + K DR 
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDQVYGG---------RPRPPKGASEEFISTLRKFDRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP SG  +E+  P P D  +++D +R
Sbjct: 277 ALHATMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMR 312
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>YLYB_BACSU (Q45480) Hypothetical RNA pseudouridine synthase ylyB (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 303

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 42/101 (41%), Positives = 55/101 (54%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           LVE +L TGRTHQIR H KY+G PL GD  YG           PR    ++G        
Sbjct: 223 LVECQLETGRTHQIRVHMKYIGFPLAGDPKYG-----------PRKTIDFNGQ------- 264

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
                LHA +LGF HP +G+ +EF  P P+D  E+++ LR+
Sbjct: 265 ----PLHAGVLGFDHPRTGEYVEFEAPLPEDMAELIENLRK 301
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>RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 38/96 (39%), Positives = 53/96 (55%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PLLGD+ YGG         RPR P         ++    R 
Sbjct: 227 RLETGRTHQIRVHMAHIAHPLLGDQLYGG---------RPRPPKGSSEAFLTVLRAFQRQ 277

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L  +HP +G+ +E   P P DF E+++ L+
Sbjct: 278 ALHATMLRLEHPINGELIECHAPLPADFVELIEALK 313
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>RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 39/96 (40%), Positives = 52/96 (54%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PL+GD  YGG         RPR P        + + K DR 
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 277 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312
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>RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 39/96 (40%), Positives = 52/96 (54%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PL+GD  YGG         RPR P        + + K DR 
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 277 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312
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>RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 39/96 (40%), Positives = 52/96 (54%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PL+GD  YGG         RPR P        + + K DR 
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 277 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312
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>RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 39/96 (40%), Positives = 52/96 (54%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PL+GD  YGG         RPR P        + + K DR 
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKFDRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            LHA +L   HP SG  +E+  P P D  E+++ +R
Sbjct: 277 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 312
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>RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 325

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 37/99 (37%), Positives = 52/99 (52%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           RL TGRTHQIR H  ++ +PL+GD+ YGG         RPR P         ++   DR 
Sbjct: 227 RLETGRTHQIRVHMSHINHPLVGDQLYGG---------RPRPPKGASDSFIAILRGFDRQ 277

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVT 364
            LHA +L   HP  G  +E+    P+D  E+++ L+  T
Sbjct: 278 ALHATMLRLYHPIRGIQMEWHAALPEDMVELINALKADT 316
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>YMDA_CHLAU (Q45826) Hypothetical RNA pseudouridine synthase in mdh 5'region|
           (EC 5.4.99.-) (RNA-uridine isomerase) (RNA
           pseudouridylate synthase) (ORFA) (Fragment)
          Length = 253

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 42/101 (41%), Positives = 54/101 (53%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +L+E +L TGRTHQIR H ++LG P++GD  YG              P + H  LS    
Sbjct: 168 SLLEVQLETGRTHQIRVHLRHLGYPIVGDPVYG--------------PRRSHLHLS---- 209

Query: 495 KIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
              R  LHAA LG  HP SG+  EF+ P P D   VL +L+
Sbjct: 210 ---RQFLHAAYLGLVHPRSGRWQEFTAPLPADLQIVLRQLQ 247
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>RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 317

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 39/93 (41%), Positives = 50/93 (53%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           ++L+E RL TGRTHQ+R H   +G+ LLGD  YG            R+   +H  L +L 
Sbjct: 225 ASLIECRLETGRTHQVRVHMSSIGHSLLGDPVYG------------RSKKAHHALLQSLA 272

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDD 400
               R  LHAA LGF HP SGK ++F    P D
Sbjct: 273 --FQRQALHAAHLGFIHPISGKQVDFDAEMPQD 303
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>RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           +E RL TGRTHQIR H  +L +P++GD  YGG      +L  P+      G    LV+++
Sbjct: 230 LECRLETGRTHQIRVHMAHLKSPIVGDPLYGG------ALKLPK------GATDTLVAEL 277

Query: 489 ---DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEGQDSDNAAQV 322
               R  LHA  L F HP SG+ +  S P P+D   ++  LR        +DS  AA++
Sbjct: 278 RGFKRQALHAETLEFLHPVSGEPIRASAPVPEDLQRLMSALR--------EDSARAAEL 328
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>RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 344

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 40/104 (38%), Positives = 52/104 (50%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           S L+   L TGRTHQIR H   +G+PL GD  YG T            PS      ++ V
Sbjct: 246 STLLHCSLETGRTHQIRVHLLSIGHPLAGDPVYGRTSP---------DPS-----TADAV 291

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRV 367
            ++ R  LHA  L   HPHSG+ L +  P PDD   +L  +R +
Sbjct: 292 VRLPRQALHAWQLELTHPHSGQILLWESPLPDDMAALLQAIRNL 335
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>RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 320

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 37/97 (38%), Positives = 50/97 (51%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRP 481
           +L TGRTHQIR H  ++G PL+GD  YGG         R R P      L   + +  R 
Sbjct: 226 KLETGRTHQIRVHMSHIGYPLVGDPVYGG---------RFRIPPVASQTLVQTLREFPRQ 276

Query: 480 CLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
            LHA  L   HP +G  +++  P P+DF  +L  LR+
Sbjct: 277 ALHARFLELDHPATGVRMKWESPLPEDFLWLLSLLRQ 313
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>RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 41/116 (35%), Positives = 57/116 (49%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           +E RL TGRTHQIR H  +L +P++GD  YGG   +         P     +L + +   
Sbjct: 230 LECRLETGRTHQIRVHMAHLKSPIVGDPLYGGALKL---------PKGATDELVHELRTF 280

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEGQDSDNAAQV 322
            R  LHA  L F HP SG+ +  S P P D   ++  LR        +DS  AA++
Sbjct: 281 KRQALHAETLEFLHPVSGEPVRASAPVPADLQRLMTVLR--------EDSARAAEL 328
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>RLUD_RALSO (Q8XYX8) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 358

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 40/100 (40%), Positives = 56/100 (56%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +LV+ +L TGRTHQIR H +  G+PLLGD  Y  T++      RP+T        + L +
Sbjct: 260 SLVQCQLETGRTHQIRVHFESEGHPLLGDPVY--TRNFRRG--RPQTIK------APLPA 309

Query: 495 KIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
              R  LHA  LG  HP SG+++ +    PDD  E++D L
Sbjct: 310 PFARQALHAVRLGLVHPASGQSVHWHAGVPDDLAELMDAL 349
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>RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 374

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 41/101 (40%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGD-LSNLVSK 493
           +E  L TGRTHQIR H +   +PL GD  YG           PR P    GD +   V  
Sbjct: 246 IECSLETGRTHQIRVHMREANHPLAGDPVYG----------NPRHPC---GDTVKEAVKS 292

Query: 492 ID-RPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           +  R  LHA  L F HP SG+ + F  P PDD   +L  LR
Sbjct: 293 LGARQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLR 333
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>RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 315

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           V +RL TGRTHQIR H  ++G PLLGD  YGG                Y  +  N+  K 
Sbjct: 224 VSFRLETGRTHQIRVHMLHIGYPLLGDPLYGGID----------YGCNYFQENRNIYRKF 273

Query: 489 D--RPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
           +  R  LHA  + F HP + K + +S   P D  ++L  L++
Sbjct: 274 NLFRQALHADYIEFIHPFTQKVMSWSASLPQDMKDILLYLKK 315
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>YJBO_BACSU (O31613) Hypothetical RNA pseudouridine synthase yjbO (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 283

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 34/95 (35%), Positives = 46/95 (48%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           V  +L TGRTHQIR H  YLG+PL GD  YGGT+                        +I
Sbjct: 207 VALQLETGRTHQIRVHMSYLGHPLCGDTLYGGTRQ-----------------------EI 243

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVL 385
            R  LH+  L F HP + + + F  P P D ++++
Sbjct: 244 GRQALHSEHLSFIHPLTQENMRFHAPLPQDMSKLI 278
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>RLUD_XYLFT (Q87AR7) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 35/99 (35%), Positives = 49/99 (49%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           +E RL TGRTHQIR H  +L +P++GD  YGG+  +         P      L  ++   
Sbjct: 230 LECRLDTGRTHQIRVHMAHLRHPIVGDRLYGGSLKL---------PKGGTDALVAMLRGF 280

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            R  LHA +L F HP     +    P P+D  ++L  LR
Sbjct: 281 KRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLLAALR 319
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>RLUD_XYLFA (Q9PET9) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 331

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 35/99 (35%), Positives = 49/99 (49%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           +E RL TGRTHQIR H  +L +P++GD  YGG+  +         P      L  ++   
Sbjct: 230 LECRLDTGRTHQIRVHMAHLRHPIVGDRLYGGSLKL---------PKVGTDALVVMLRGF 280

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
            R  LHA +L F HP     +    P P+D  ++L  LR
Sbjct: 281 KRQALHAEVLEFLHPVGALPVRIVAPVPEDLCQLLAVLR 319
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>RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 374

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGD-LSNLVSK 493
           +E  L TGRTHQIR H +   +PL  D  YG           PR P    GD +   V  
Sbjct: 246 IECSLETGRTHQIRVHMREANHPLAADPVYG----------NPRHPC---GDTVKEAVKS 292

Query: 492 ID-RPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           +  R  LHA  L F HP SG+ + F  P P+D   +L  LR
Sbjct: 293 LGARQALHAYRLSFTHPESGETVSFEAPIPNDIYHLLSVLR 333
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>RLUD_BLOFL (P59838) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 321

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 33/100 (33%), Positives = 52/100 (52%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           V   L TGRTHQIR H  Y+ +PL+GD+ Y G  S+           K   +L+N +   
Sbjct: 228 VRINLKTGRTHQIRVHMAYINHPLVGDQKYKGNFSVF-------DIKKMSDELNNYLLDF 280

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
           +R  LHA  L   HP +   ++++ P P D  +++  L++
Sbjct: 281 NRQALHACTLQLLHPITQVQMKWNAPLPQDILQLIAILKK 320
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>Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_0682 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 327

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           L+  +L TGRTHQIRAH +YL   ++GD  YG                     L+ ++SK
Sbjct: 227 LIGAKLFTGRTHQIRAHLEYLNRHIIGDNLYG---------------------LNGVLSK 265

Query: 492 ID-RPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
            + R  LHA L+ FKHP S + L F  P   D  E L ++
Sbjct: 266 EEIRIMLHAYLIEFKHPRSEQKLRFKVPLLKDMLEYLKKV 305
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>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 33/102 (32%), Positives = 48/102 (47%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV     TGRTHQIR H +Y G+P+  D+ YG                ++   L+   
Sbjct: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG--------------DREFDRQLTEAG 274

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           + ++R  LHAA L F HP +G+ +    P  D     L +LR
Sbjct: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDDGLKRCLQKLR 316
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>RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 312

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -2

Query: 660 RLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGD-LSNLVSKIDR 484
           RL TGRTHQIR H  ++  PL+GD  Y G K            S Y  D  +N + K  R
Sbjct: 227 RLETGRTHQIRVHMLHIKYPLVGDPCYSGFK----------IQSNYRKDKKTNKIYKFPR 276

Query: 483 PCLHAALLGFKHPHSGKALEFSCPPPDDFTEVL 385
             LHA  L   HP     + ++ P P D  E+L
Sbjct: 277 QALHANHLSLHHPIKKNVMSWTVPLPQDIQELL 309
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>Y1629_SYNY3 (P74346) Hypothetical RNA pseudouridine synthase slr1629 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 327

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 36/103 (34%), Positives = 52/103 (50%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           +E++L TGRTHQIR H+K +G+PL+GD  Y    S+ ++L     P +            
Sbjct: 245 LEFQLETGRTHQIRVHSKQMGHPLVGDNLYTSPGSVNVNL-----PGQ------------ 287

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTP 361
               LHA  L   HP SG+ +    P P  F ++L  LR+  P
Sbjct: 288 ---ALHAHQLSLIHPVSGEIITAIAPMPAHFEKLLVYLRQRIP 327
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>RLUC_VIBPA (Q87N15) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 35/103 (33%), Positives = 51/103 (49%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + L++    TGRTHQIR H +Y G+P+  D+ YG            R    Y G L    
Sbjct: 227 ATLIQASPITGRTHQIRVHTQYTGHPIAWDDRYG-----------DRRFDAYTGQLG--- 272

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
             +DR  LHAA + F+HP + + +E + P      +VL  LR+
Sbjct: 273 --LDRLFLHAANIKFQHPSNDEWMEINAPMESKLEKVLVGLRK 313
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>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 32/102 (31%), Positives = 48/102 (47%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV     TGRTHQIR H +Y G+P+  D+ YG                ++   L+   
Sbjct: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG--------------DREFDRQLTEAG 274

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           + ++R  LHAA L F HP +G+ +    P  +     L +LR
Sbjct: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316
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>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 32/102 (31%), Positives = 48/102 (47%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV     TGRTHQIR H +Y G+P+  D+ YG                ++   L+   
Sbjct: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG--------------DREFDRQLTEAG 274

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           + ++R  LHAA L F HP +G+ +    P  +     L +LR
Sbjct: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316
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>RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 32/102 (31%), Positives = 48/102 (47%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV     TGRTHQIR H +Y G+P+  D+ YG                ++   L+   
Sbjct: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG--------------DREFDRQLTEAG 274

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           + ++R  LHAA L F HP +G+ +    P  +     L +LR
Sbjct: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316
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>Y1758_AQUAE (O67638) Hypothetical RNA pseudouridine synthase aq_1758 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 316

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 35/104 (33%), Positives = 50/104 (48%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           L++ ++ TGRTHQIR H   +G+P+LGD TYG   S       P+      G+ + L+  
Sbjct: 227 LLKVKIHTGRTHQIRVHFASIGHPVLGDRTYGFKSSSV-----PKELLSLMGECNMLI-- 279

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTP 361
                  A  LGF HP  G+ + F    P+ F  V   L   +P
Sbjct: 280 -------AYHLGFYHPTKGEWMVFEIEEPETFKSVYSWLEEHSP 316
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>Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP0745 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 327

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           L+  +L TGRTHQIRAH +YL   ++GD  YG                     L+  + K
Sbjct: 227 LIGAKLFTGRTHQIRAHLEYLNRHIIGDNLYG---------------------LNGALPK 265

Query: 492 ID-RPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
            + R  LHA L+ FKHP S + L F  P   D  E L ++
Sbjct: 266 EEIRIMLHAYLIEFKHPRSEQKLRFKVPLLKDMLEYLKKV 305
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>RLUD_BUCBP (Q89AD9) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 317

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = -2

Query: 657 LXTGRTHQIRAHAKYLGNPLLGDETYGGT----KSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           L TGRTHQIR H  Y+  PL+GD+TYG      K+++L+LL               V K 
Sbjct: 229 LETGRTHQIRTHMLYINFPLVGDKTYGNKFKFYKNISLTLLEQ-------------VKKF 275

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
            R  LHA+ L   HP +   +E++   P D   ++  L +
Sbjct: 276 PRQALHASRLCLYHPVTKHLMEWNSTLPRDMLNLIALLNK 315
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>Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1567 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 308

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 35/102 (34%), Positives = 44/102 (43%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           ++L++  L TGRTHQIR H   L +P  GD  YG    +   L                 
Sbjct: 222 ASLLDVHLETGRTHQIRVHFAALHHPCCGDLVYGADPKLAKRL----------------- 264

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
             +DR  LHA  L F HP  G+ +E   P P D    L  LR
Sbjct: 265 -GLDRQWLHARSLAFAHPADGRRVEIVSPYPADLQHALKILR 305
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>Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1540/MT1592 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 308

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 35/102 (34%), Positives = 44/102 (43%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           ++L++  L TGRTHQIR H   L +P  GD  YG    +   L                 
Sbjct: 222 ASLLDVHLETGRTHQIRVHFAALHHPCCGDLVYGADPKLAKRL----------------- 264

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
             +DR  LHA  L F HP  G+ +E   P P D    L  LR
Sbjct: 265 -GLDRQWLHARSLAFAHPADGRRVEIVSPYPADLQHALKILR 305
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>RLUC_VIBCH (Q9KQH0) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 34/103 (33%), Positives = 48/103 (46%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV+    TGRTHQIR H +Y+G+P+  D+ YG  +                 D     
Sbjct: 228 ATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRF----------------DAYTAQ 271

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
             I+R  LHAA + F HP S K LE   P      + L ++R+
Sbjct: 272 FGIERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALTKMRQ 314
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>RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 326

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 33/108 (30%), Positives = 49/108 (45%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV+    TGRTHQIR H +Y G+P+  D+ YG                  H D     
Sbjct: 235 ATLVKASPVTGRTHQIRVHTQYAGHPIALDDKYGDK----------------HFDEQMTQ 278

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRRVTPTN 355
             + R  LHA  + F+HP +G+ L  + P   +  ++L  LR    +N
Sbjct: 279 LGLTRLFLHAFSIRFEHPKTGETLRINAPLDPEMKKILGALREQKSSN 326
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>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 32/102 (31%), Positives = 46/102 (45%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV     TGRTHQIR H +Y G+P+  D+ YG                ++   L+   
Sbjct: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG--------------DREFDQQLTEAG 274

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           + + R  LHAA L F HP +G+ +    P  +     L  LR
Sbjct: 275 TGLKRLFLHAAALKFTHPGTGEVMRIEAPMDNALKRCLQVLR 316
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>RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 32/102 (31%), Positives = 45/102 (44%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV     TGRTHQIR H +Y G+P+  D+ YG                ++   L+   
Sbjct: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG--------------DREFDQQLTEAG 274

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           + + R  LHAA L F HP +G  +    P        L+ LR
Sbjct: 275 TGLKRLFLHAAALKFTHPGTGDVMRIEAPMDKQLKRCLEVLR 316
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>RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 219

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 30/81 (37%), Positives = 40/81 (49%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGR+HQ+R H   LG+P+LGD+ Y   ++  LS                      R CLH
Sbjct: 158 TGRSHQLRLHMLALGHPILGDKFYAPPQAKALS---------------------PRLCLH 196

Query: 471 AALLGFKHPHSGKALEFSCPP 409
           A  L F+HP + + L FS PP
Sbjct: 197 AEQLAFRHPITQEWLSFSAPP 217
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>RLUC_VIBVU (Q8D8G1) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 33/102 (32%), Positives = 50/102 (49%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV+    TGRTHQIR H +Y G+P+  D+ YG          R    +  HG      
Sbjct: 227 ATLVQASPITGRTHQIRVHTQYSGHPIAWDDRYGDR--------RFDAYTAQHG------ 272

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
             ++R  LHAA + F HP + + +E + P  +   +V+  LR
Sbjct: 273 --LNRLFLHAANIRFTHPATEQPMEINAPMGEQLEKVVQSLR 312
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>RLUC_HAEIN (P44433) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 322

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 32/102 (31%), Positives = 49/102 (48%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV+    TGRTHQIR H +Y G+P+  D+ YG            +   K   +L    
Sbjct: 234 ATLVKASPVTGRTHQIRVHTQYAGHPIALDDKYG-----------DKDFDKQMNELG--- 279

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
             ++R  LHA  + F+HP +G+ L F+         +L +LR
Sbjct: 280 --LNRLFLHAFSIRFEHPKNGETLRFNASLDHQMKAILQKLR 319
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>TRUC_ECO57 (Q8X6T6) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           LVE    TGR HQ+R H  +L +P++GD  +G        L + R+ +++ G        
Sbjct: 151 LVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG-------- 195

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE--------GQD 343
           + R  LHA+ L   HP +G+ L       D + + L +   R + P NE        GQD
Sbjct: 196 LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQD 255

Query: 342 SDNAA 328
            + ++
Sbjct: 256 GERSS 260
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>RLUC_YERPE (Q8ZFU1) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 320

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 32/103 (31%), Positives = 48/103 (46%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV+    TGRTHQIR HA + G+P+  D+ YG  +                 D     
Sbjct: 229 ATLVKASPVTGRTHQIRVHALHAGHPIAFDDRYGYREF----------------DQQLQG 272

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELRR 370
           + + R  LHAA L F+HP++G+ +    P  +     L  LR+
Sbjct: 273 TGLHRLFLHAAALRFEHPNTGETMRIEAPLDNQLRHCLLALRK 315
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>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 302

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 31/92 (33%), Positives = 40/92 (43%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +LVE  L TGRTHQIR H   LG+PL GD  YGG   +                      
Sbjct: 224 SLVELELETGRTHQIRVHLASLGHPLTGDSLYGGGSKL---------------------- 261

Query: 495 KIDRPCLHAALLGFKHPHSGKALEFSCPPPDD 400
            ++R  LHA  +   HP + + +    P P D
Sbjct: 262 -LNRQALHANKVQAVHPITDELIVAEAPFPAD 292
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>RLUC_BUCAP (Q8K9J8) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 314

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 32/101 (31%), Positives = 47/101 (46%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LV     TGRTHQIR H  + G+P+L D+ Y G + +  ++                 
Sbjct: 228 TTLVSITPKTGRTHQIRVHTLHAGHPILFDKRY-GKRDLDCNIKNK-------------- 272

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
           +KI+R  LHA  + F HP +GK +    P    F   L+ L
Sbjct: 273 TKINRLLLHATSINFIHPETGKKMHIVAPLDVYFKNYLNTL 313
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>TRUC_SHIFL (P0AA42) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           LVE    TGR HQ+R H  +L +P++GD  +G        L + R+ +++ G        
Sbjct: 151 LVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG-------- 195

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 352
           + R  LHA+ L   HP +G+ L       D + + L +   R + P NE
Sbjct: 196 LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENE 244
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>TRUC_ECOLI (P0AA41) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           LVE    TGR HQ+R H  +L +P++GD  +G        L + R+ +++ G        
Sbjct: 151 LVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG-------- 195

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 352
           + R  LHA+ L   HP +G+ L       D + + L +   R + P NE
Sbjct: 196 LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENE 244
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>TRUC_ECOL6 (Q8FEF9) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           LVE    TGR HQ+R H  +L +P++GD  +G        L + R+ +++ G        
Sbjct: 151 LVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG-------DLRQNRSGAEHFG-------- 195

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 352
           + R  LHA+ L   HP +G+ L       D + + L +   R + P NE
Sbjct: 196 LQRLMLHASQLSLTHPFTGEPLAIHAGLDDTWMQALSQFGWRGLLPENE 244
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>RLUC_BUCAI (P57430) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 314

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 30/92 (32%), Positives = 44/92 (47%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGRTHQIR HA + G+P+  D+ YG               +    D+ N   KI+R  LH
Sbjct: 237 TGRTHQIRVHALHAGHPIFFDKRYG--------------KNDLDADIKN-NHKINRLLLH 281

Query: 471 AALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
           ++ + F HP +G  +    P   DF   L+ +
Sbjct: 282 SSGVHFIHPKNGNKIYIKAPLDIDFQNYLNTI 313
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>Y1592_SYNY3 (P72970) Hypothetical RNA pseudouridine synthase slr1592 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 291

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYG-GTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           +E  + TGR HQIR H   LG PLLGD  YG G   +     RP                
Sbjct: 200 LEVEIRTGRPHQIRIHLASLGYPLLGDRLYGPGGVPINCRTARPSDGGY----------- 248

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDD 400
                LH+  LGF H H+ +A++ + P P +
Sbjct: 249 ----TLHSYQLGFLHLHTQQAIKLTAPLPPE 275
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>Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG209 homolog (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase) (H10_orf309)
          Length = 309

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 30/101 (29%), Positives = 45/101 (44%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +AL++  L TGRTHQIR H +++ +P+  D  YG         L+    ++Y        
Sbjct: 217 AALIKCELLTGRTHQIRVHLQFIKHPVYNDPLYG---------LKSEQATEY-------- 259

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
                  LHA  + F HP   K + F       F++ LD L
Sbjct: 260 ----GQYLHAQQISFIHPTLNKEMGFEAQLDKTFSDKLDNL 296
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>RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 28/89 (31%), Positives = 43/89 (48%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +A V  +  TGR+HQ+R H   LG+P+LGD+ Y   ++++L+   PR             
Sbjct: 148 TARVVLKPITGRSHQLRVHMLALGHPILGDQFYASPEALSLA---PRLQ----------- 193

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCP 412
                  LHA +L   HP  G ++ F  P
Sbjct: 194 -------LHAEMLTITHPAYGNSMTFKVP 215
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>RLUC_RICCN (Q92IS6) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 303

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLS 553
           L+E+   TGR HQ+R HAK LG P+LGD+ YG  + M  S
Sbjct: 228 LIEFTPVTGRMHQLRLHAKLLGCPILGDDKYGNKEIMPYS 267
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>RLUC_PSEAE (Q9HZM9) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 318

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 35/101 (34%), Positives = 46/101 (45%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + LVE R  TGRTHQIR HAK+ G+ + GD  YG                 +  ++  L 
Sbjct: 233 ATLVEARPITGRTHQIRVHAKHAGHAIAGDPKYG--------------DEDFSREIRELG 278

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
            K  R  LHAA L    P  G+ LE   P  + +   L+ L
Sbjct: 279 GK--RLFLHAAQLRVPLP-DGQVLELEAPVDEMWQRSLERL 316
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>RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 320

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 28/102 (27%), Positives = 46/102 (45%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           + L++    TGRTHQIR H +Y G+P+  D+ YG                    D     
Sbjct: 232 ATLIKASPITGRTHQIRVHTQYAGHPIACDDRYGDQAF----------------DAKLKQ 275

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDELR 373
           + ++R  LHA  + F+HP + + +  + P       +L +LR
Sbjct: 276 AGLNRLFLHAHSIRFEHPKTAEQMFITAPLDHHLKTILAKLR 317
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>RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 42/89 (47%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +A V  +  TGR+HQ+R H   LG+P+LGD  Y   ++++L+   PR             
Sbjct: 148 TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEALSLA---PRLQ----------- 193

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCP 412
                  LHA +L   HP  G ++ F  P
Sbjct: 194 -------LHAEMLTITHPAYGNSMTFKVP 215
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>RLUA_HAEDU (P59831) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 222

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 26/87 (29%), Positives = 41/87 (47%)
 Frame = -2

Query: 669 VEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKI 490
           V++   TGR+HQ+R H+  LG+P++GD+ Y    + +L+                     
Sbjct: 155 VKFTPITGRSHQLRVHSLALGHPIIGDKFYANPLAKSLA--------------------- 193

Query: 489 DRPCLHAALLGFKHPHSGKALEFSCPP 409
            R CLHA  L   HP S + + F+  P
Sbjct: 194 PRLCLHAESLTIAHPISAELMTFNTEP 220
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>RLUD_BORBU (P70870) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 326

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETY----GGTKSMTLSL 550
           +L+  +  TGRTHQ+R H KYL  P+LGDE Y    G  K +TL L
Sbjct: 229 SLLALKPKTGRTHQLRVHMKYLNFPILGDEVYGRVDGSLKKITLML 274
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>Y209_MYCGE (P47451) Hypothetical RNA pseudouridine synthase MG209 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 308

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 30/101 (29%), Positives = 42/101 (41%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +AL+   L TGRTHQIR H K++ +P+  D  YG         ++      Y        
Sbjct: 216 AALISLELLTGRTHQIRVHLKFIQHPVYNDPLYG---------IKSEKKDSY-------- 258

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
                  LHA  + F HP   K ++F  P    F+  L  L
Sbjct: 259 ----GQFLHANRICFIHPTLNKPMDFHAPLEPKFSTKLKSL 295
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>RLUC_RICPR (Q9ZDR7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 303

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLS 553
           L+E+   TGR HQ+R HA+ LG P+LGD+ YG  + M  S
Sbjct: 228 LIEFMPVTGRMHQLRLHAQLLGCPILGDDKYGNKEIMPYS 267
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>TRUC_SALTI (Q8Z439) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           LVE    TGR HQ+R H  +L +P++GD  +G         LR    +  H     L+  
Sbjct: 151 LVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD--------LRQNRSAAEHFACRRLM-- 200

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 352
                LHA+ L   HP +G+ L       + + +VL +   R + P NE
Sbjct: 201 -----LHASRLELTHPFTGQPLIIQAGLDETWMQVLTQFGWRGLLPDNE 244
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>RLUA_HAEIN (P44782) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 219

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGR+HQ+R H   LG+P+LGD+ Y   ++  +S                      R CLH
Sbjct: 158 TGRSHQLRLHMLALGHPILGDKFYSHPQAKVMS---------------------PRLCLH 196

Query: 471 AALLGFKHPHSGKALEFS 418
           A  L   HP +G+ + F+
Sbjct: 197 AEELTITHPITGETMTFN 214
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>RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +A V  +  TGR+HQ+R H   LG+P+LGD  Y   ++  ++                  
Sbjct: 148 TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA------------------ 189

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCP 412
               R  LHA +L   HP  G ++ F  P
Sbjct: 190 ---PRLLLHAEMLTITHPAYGNSMTFKAP 215
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>RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +A V  +  TGR+HQ+R H   LG+P+LGD  Y   ++  ++                  
Sbjct: 148 TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA------------------ 189

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCP 412
               R  LHA +L   HP  G ++ F  P
Sbjct: 190 ---PRLLLHAEMLTITHPAYGNSMTFKAP 215
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>RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +A V  +  TGR+HQ+R H   LG+P+LGD  Y   ++  ++                  
Sbjct: 148 TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA------------------ 189

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCP 412
               R  LHA +L   HP  G ++ F  P
Sbjct: 190 ---PRLLLHAEMLTITHPAYGNSMTFKAP 215
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>RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 218

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLV 499
           +A V  +  TGR+HQ+R H   LG+P+LGD  Y   ++  ++                  
Sbjct: 148 TARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMA------------------ 189

Query: 498 SKIDRPCLHAALLGFKHPHSGKALEFSCP 412
               R  LHA +L   HP  G ++ F  P
Sbjct: 190 ---PRLLLHAEMLTITHPAYGNSMTFKAP 215
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>TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 376

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +L+E +  TGR HQ+R H  ++ +P++GD  +G         LR     + H     L+ 
Sbjct: 264 SLMELKPQTGRKHQLRRHMSHIHHPIIGDTAHGD--------LRHNRGMESHFSCGRLM- 314

Query: 495 KIDRPCLHAALLGFKHPHSGKAL----EFSCPPPDDFTE-----VLDELRRVT-PTNEGQ 346
                 LHA+ L   HP SG+ L     +  P     T+     +L E   V  P + GQ
Sbjct: 315 ------LHASELQLNHPVSGQPLTLQARWDAPWQGVVTQFGWKGILPEFEGVEFPADSGQ 368

Query: 345 DSDN 334
           DS++
Sbjct: 369 DSEH 372
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>RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 250

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGR+HQ+R H + LG+P++GDE Y    + T S                     +R  LH
Sbjct: 162 TGRSHQLRVHMQALGHPIVGDEFYAQGDAFTFS---------------------ERLELH 200

Query: 471 AALLGFKHPHS 439
           AA L F HP S
Sbjct: 201 AAELSFYHPKS 211
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>TRUC_YERPE (Q8ZH72) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 257

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 28/83 (33%), Positives = 41/83 (49%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +LV  +  TGR HQ+R H  ++ +P++GD T+G         LR       H   S L+ 
Sbjct: 150 SLVALKPETGRKHQLRRHMAHIRHPIIGDSTHGD--------LRQNRGVAQHFGCSRLM- 200

Query: 495 KIDRPCLHAALLGFKHPHSGKAL 427
                 LHA+ L   HP +G+AL
Sbjct: 201 ------LHASHLHLNHPVTGEAL 217
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>YK27_CAEEL (O16686) Hypothetical protein K07E8.7 in chromosome IV|
          Length = 432

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETY 580
           ++V+  + TGRTHQIR H+++LG+P+ GD+ Y
Sbjct: 283 SVVQVHIETGRTHQIRVHSQFLGHPIAGDQIY 314
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>TRUC_SALTY (Q8ZMD5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 260

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           LVE    TGR HQ+R H  +L +P++GD  +G         LR    +  H     L+  
Sbjct: 151 LVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD--------LRQNRSAAEHFACRRLM-- 200

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDEL--RRVTPTNE 352
                LHA+ L   HP +G+ L       + + + L +   R + P NE
Sbjct: 201 -----LHASRLELTHPFTGQPLIIQAGLDETWMQALTQFGWRGLLPDNE 244
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>TRUC_VIBVU (Q8DBG5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 245

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 26/78 (33%), Positives = 37/78 (47%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           L+E +  TGR HQ+R H  +L +P++GD T+G  K               H  L      
Sbjct: 151 LMELKPKTGRKHQLRRHMAHLRHPIVGDTTHGDGK---------------HNKLFREEFD 195

Query: 492 IDRPCLHAALLGFKHPHS 439
             R  LHA+ L F HP++
Sbjct: 196 APRLLLHASELRFVHPYT 213
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>RLUA_VIBCH (Q9KP71) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 245

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGR+HQ+R H + LG+P++GD+ Y   +++  +                     DR  LH
Sbjct: 157 TGRSHQLRVHMQSLGHPIVGDDLYAPPEAVEFA---------------------DRLQLH 195

Query: 471 AALLGFKHPHS 439
           AA L F HP S
Sbjct: 196 AAELCFYHPRS 206
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>TRUC_VIBPA (Q87MD4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 246

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/95 (28%), Positives = 42/95 (44%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           L+E +  TGR HQ+R H  +L +P++GD ++G  K               H  L      
Sbjct: 155 LMEMKPKTGRKHQLRRHMAHLRHPIVGDTSHGDGK---------------HNKLFRNEFD 199

Query: 492 IDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEV 388
             R  LHA+ L F HP + + L       D + ++
Sbjct: 200 SHRLLLHASELRFVHPFTNEELVMKASIDDTWQQL 234
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>TRUC_VIBCH (Q9KTL4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 244

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 26/82 (31%), Positives = 38/82 (46%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSK 493
           L+E +  TGR HQ+R H  +L +P++GD T+G                  H  L      
Sbjct: 151 LMEMQPKTGRKHQLRRHMAHLRHPIVGDTTHG---------------DGVHNRLFREHFS 195

Query: 492 IDRPCLHAALLGFKHPHSGKAL 427
             R  LHA+ L F HP++ + L
Sbjct: 196 AQRLMLHASELRFMHPYTQQPL 217
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>Y956_HELPY (O25610) Hypothetical RNA pseudouridine synthase HP0956 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 242

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLL 547
           L++  + TGRTHQIR H K++ +P++GD  Y    S+   L+
Sbjct: 178 LLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLM 219
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>TRUC_HAEDU (P59840) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 243

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 29/86 (33%), Positives = 42/86 (48%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +LV     TGR HQ+R H K+L +P++GD  YG        L + R  ++  G       
Sbjct: 150 SLVALSPKTGRKHQLRRHMKHLFHPIMGDTKYG-------DLHQNRRLTEKTG------- 195

Query: 495 KIDRPCLHAALLGFKHPHSGKALEFS 418
             +R  LHA LL F HP + + +  S
Sbjct: 196 -CNRLMLHARLLHFTHPKTLQKITIS 220
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>RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 250

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGR+HQ+R H + LG+P++GDE Y   ++   S                     +R  LH
Sbjct: 162 TGRSHQLRVHMQALGHPIVGDEFYATEEAKVFS---------------------ERLELH 200

Query: 471 AALLGFKHPHS 439
           A+ L F HP S
Sbjct: 201 ASELSFYHPKS 211
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>RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 206

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGR+HQ+R H   +G+P+LGD  Y                   H +   + S++    LH
Sbjct: 145 TGRSHQLRVHMLAMGHPILGDGFYA------------------HPEAKAMASRLQ---LH 183

Query: 471 AALLGFKHPHSGKALEFSC 415
           A  L   HP  G  + F C
Sbjct: 184 AQQLCITHPEFGTPMHFKC 202
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>TRUC_PASMU (Q9CNF3) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 243

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 26/69 (37%), Positives = 34/69 (49%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGR HQ+R H K+L +P+LGD  YG        L + R  + + G        + R  LH
Sbjct: 159 TGRKHQLRRHMKHLFHPILGDTQYG-------DLHQNRALTTHTG--------VQRLMLH 203

Query: 471 AALLGFKHP 445
           A  L F HP
Sbjct: 204 AERLIFTHP 212
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>Y956_HELPJ (Q9ZKP5) Hypothetical RNA pseudouridine synthase jhp_0890 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 242

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLL 547
           L++  + TGRTHQIR H K++ +P++GD  Y    S    L+
Sbjct: 178 LLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSSAKRLM 219
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>Y505_ZYMMO (O66114) Hypothetical RNA pseudouridine synthase ZMO0505 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 219

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKY-LGNPLLGDETYGGTKSMTLS 553
           +LV +R  TGRTHQ+R HA   LG P++GD  YG  K   +S
Sbjct: 144 SLVAFRPETGRTHQLRVHAATGLGLPIVGDPFYGSHKDENIS 185
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>RLUC_BUCBP (Q89AH2) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 315

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 30/92 (32%), Positives = 41/92 (44%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGRTHQIR H  +L  P++ D  YG      +  L     +K++         I+R  LH
Sbjct: 238 TGRTHQIRVHLLHLNYPIVLDAKYG------IKKLDYFIKNKFN---------INRLLLH 282

Query: 471 AALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
           A  + F HP   K +  + P    F  VL  L
Sbjct: 283 AESINFFHPKRKKNILITAPLDYVFKTVLKNL 314
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>RIB2_YEAST (Q12362) DRAP deaminase|
          Length = 591

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSN-- 505
           +++V+ +  TGRTHQIR H +YLG P+  D  Y               P    G L N  
Sbjct: 298 TSIVKCKPLTGRTHQIRVHLQYLGFPIANDPIYSNPDIW--------GPDLGRGGLQNYD 349

Query: 504 -LVSKIDRPCLHAALLGFKHPHS 439
            +V K+D          + HPHS
Sbjct: 350 DIVLKLDAIGKTNPAESWIHPHS 372
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>YD36C_YEAST (Q12069) Hypothetical 53.4 kDa protein in PRP9-NAT1 intergenic|
           region
          Length = 462

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETY 580
           +++V+ +  TGR+HQIR H +YLG+P+  D  Y
Sbjct: 325 TSIVKCKPLTGRSHQIRVHLQYLGHPIANDPIY 357
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>Y042_HAEIN (P43930) Hypothetical RNA pseudouridine synthase HI0042 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 224

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 24/68 (35%), Positives = 29/68 (42%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TG+THQ+R   K LG+P+LGD  YG                           KIDR  LH
Sbjct: 143 TGKTHQLRVAMKSLGSPILGDGLYGKN-----------------------TEKIDRTYLH 179

Query: 471 AALLGFKH 448
           A  L F +
Sbjct: 180 ATQLEFDY 187
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>YA32_SCHPO (Q09709) Hypothetical protein C18B11.02c in chromosome I|
          Length = 394

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 678 SALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTK 568
           ++LV  +  TGRTHQ+R H +YLG P+  D  Y   +
Sbjct: 240 TSLVLCKPLTGRTHQLRVHLQYLGYPIANDPIYANKR 276
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>PUS6_YEAST (P53294) Pseudouridylate synthase 6 (EC 5.4.99.-) (Pseudouridine|
           synthase 6) (tRNA pseudouridine 31 synthase) (PSI31
           synthase) (Uracil hydrolyase)
          Length = 404

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETY 580
           TGRTHQIR H   LG+P++ D  Y
Sbjct: 281 TGRTHQIRIHLARLGHPIVNDSVY 304
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>Y370_MYCGE (P47610) Hypothetical RNA pseudouridine synthase MG370 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 323

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETY 580
           +L+  RL +GRTHQIRA      N L+GD+ Y
Sbjct: 236 SLITIRLISGRTHQIRACLNLFSNQLVGDKKY 267
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>Y714_MYCCT (P45614) Hypothetical RNA pseudouridine synthase MCAP_0714 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase) (ORF2)
          Length = 302

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTK 568
           L+  +L TG+ HQIR+   +  NP+L D  Y G K
Sbjct: 227 LILVKLITGKKHQIRSVLSFYNNPILNDFRYNGKK 261
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>TRUC_HAEIN (P44197) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine|
           isomerase C) (tRNA pseudouridylate synthase C)
          Length = 239

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 24/99 (24%), Positives = 45/99 (45%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVS 496
           +LV+    TGR H +R H K++ +P+ GD  YG        L + R    + G       
Sbjct: 150 SLVKLIPHTGRKHXLRXHMKHVFHPIXGDTQYG-------DLHQNRALMSHLG------- 195

Query: 495 KIDRPCLHAALLGFKHPHSGKALEFSCPPPDDFTEVLDE 379
              R  LH+  L F HP + + +  +    + + +++++
Sbjct: 196 -CSRLFLHSDSLSFIHPITKEQITITAGLDEQWQQLMNQ 233
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>PUS5_ASHGO (Q750S3) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine|
           synthase 5) (Uracil hydrolyase PUS5)
          Length = 260

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 672 LVEWRLXTGRTHQIRAH-AKYLGNPLLGDETYGG 574
           LV  +L TGR HQIR   A+  G P++ D+ YGG
Sbjct: 138 LVLLQLQTGRKHQIRKQMAQVFGQPVVNDKMYGG 171
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>Y347_HELPY (O25114) Hypothetical RNA pseudouridine synthase HP0347 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 298

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 27/92 (29%), Positives = 40/92 (43%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGRTHQIR H   + + ++G+  YG         L+     K   +   L+       LH
Sbjct: 216 TGRTHQIRLHLSSVDHRIVGEGLYGVADENAREYLQ----LKRENNAPLLM-------LH 264

Query: 471 AALLGFKHPHSGKALEFSCPPPDDFTEVLDEL 376
           AA L F+    G   + + P P+ F   L +L
Sbjct: 265 AASLEFE--FKGAIYKIASPMPERFMPFLKDL 294
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>I10R2_MOUSE (Q61190) Interleukin-10 receptor beta chain precursor (IL-10R-B)|
           (IL-10R2) (Cytokine receptor family 2 member 4)
           (Cytokine receptor class-II member 4) (CRF2-4) (CDw210b
           antigen)
          Length = 349

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 450 HPHSGKALEFSCPPPDDFTEVLDELRRVTPTNEG---QDSDNAA 328
           HPH    L FS PPP++  EV D+L  ++  +EG      DN A
Sbjct: 272 HPHHSTFLLFSFPPPEE-AEVFDKLSIISEESEGSKQSPEDNCA 314
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>Y548_MYCPN (P75230) Hypothetical RNA pseudouridine synthase MG370 homolog (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase) (G12_orf326)
          Length = 326

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 675 ALVEWRLXTGRTHQIRAHAKYLGNPLLGDETY 580
           +L+  RL +G+THQIRA    L   L+GD  Y
Sbjct: 235 SLLTIRLVSGKTHQIRACLNLLNTQLVGDRKY 266
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>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 265 LKVFGLV-ASLSEWPN*WSGRQAFPHVQREIGATPR 161
           L VFG+  A+  EW N W   Q FP+V R +G   R
Sbjct: 12  LPVFGVTQANKEEWDNIWKNFQQFPNVSRTLGLLRR 47
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>Y347_HELPJ (Q9ZMA1) Hypothetical RNA pseudouridine synthase jhp_0321 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 293

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/91 (28%), Positives = 39/91 (42%)
 Frame = -2

Query: 651 TGRTHQIRAHAKYLGNPLLGDETYGGTKSMTLSLLRPRTPSKYHGDLSNLVSKIDRPCLH 472
           TGRTHQIR H   + + ++G+  YG         L+     K   +   L+       LH
Sbjct: 216 TGRTHQIRLHLSSVDHRIVGEGLYGVADENAREYLQ----LKRENNAPTLM-------LH 264

Query: 471 AALLGFKHPHSGKALEFSCPPPDDFTEVLDE 379
           AA L F+    G   + + P P+ F   L +
Sbjct: 265 AASLEFE--FKGAHYKIASPMPERFMPFLKD 293
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>PUS5_YEAST (Q06244) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine|
           synthase 5) (Uracil hydrolyase PUS5)
          Length = 254

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 660 RLXTGRTHQIRAH-AKYLGNPLLGDETYGGT 571
           +L TG+ HQIR H ++ L  P+L D+ +G T
Sbjct: 157 QLVTGKKHQIRNHVSQILNQPILNDKRHGST 187
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>SAK1_SCHPO (P48383) Protein sak1|
          Length = 766

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
 Frame = -3

Query: 248 CGISE*VAKLMEWSSSFSTCS--------------ARD---RRYTKKEAPGILTRLGDIF 120
           C   E VA L EW S  STCS              A D    R   ++  G+L R+ D F
Sbjct: 558 CNDKEAVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVELRQIDGVLDRMADFF 617

Query: 119 LVLFSMF 99
           L L S F
Sbjct: 618 LELPSRF 624
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>YRM2_CAEEL (Q09600) Hypothetical RING finger protein R06F6.2 in chromosome II|
          Length = 950

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 176 DLSLNMWKSLTTTPSVWPLTQRCHKSKHLQVKHHISEAAFYVFSICIS 319
           D +L M +    TP +  +  RCHKSK L + H        +  +C S
Sbjct: 643 DAALQMAQLFDCTPVIEHILMRCHKSKELMMYHQKKRDLEAIIRLCQS 690
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>PUS5_CANGA (Q6FS81) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine|
           synthase 5) (Uracil hydrolyase PUS5)
          Length = 223

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 657 LXTGRTHQIRAH-AKYLGNPLLGDETYGGT 571
           L TG+ HQIR H A  L  P++ D  YGG+
Sbjct: 131 LKTGKKHQIRKHLALNLNCPIVNDTYYGGS 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,926,624
Number of Sequences: 219361
Number of extensions: 2209608
Number of successful extensions: 5416
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 5194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5332
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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