Clone Information

BLAST Search Result

Clone Name	rbags18k21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK072887.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	353	5e-94
2	gb\|AC091774.7\| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ...	218	2e-53
3	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	218	2e-53
4	dbj\|AP003769.3\| Oryza sativa (japonica cultivar-group) genomic D...	218	2e-53
5	dbj\|AP003614.2\| Oryza sativa (japonica cultivar-group) genomic D...	218	2e-53
6	gb\|AC164597.11\| Mus musculus chromosome 15, clone RP23-108H23, c...	42	2.3
7	ref\|XM_422070.1\| PREDICTED: Gallus gallus ribosomal protein L37a...	42	2.3
8	gb\|AC142110.4\| Mus musculus BAC clone RP24-104I11 from chromosom...	42	2.3
9	ref\|XM_536187.2\| PREDICTED: Canis familiaris aggrecan keratan su...	42	2.3
10	emb\|AL353135.32\| Human DNA sequence from clone RP11-63L7 on chro...	42	2.3
11	ref\|NM_173450.1\| Mus musculus RNA pseudouridylate synthase domai...	42	2.3
12	gb\|AC079399.5\| Homo sapiens BAC clone RP11-414P19 from 4, comple...	42	2.3
13	dbj\|AK043340.1\| Mus musculus 7 days neonate cerebellum cDNA, RIK...	42	2.3
14	dbj\|AK035800.1\| Mus musculus 16 days neonate cerebellum cDNA, RI...	42	2.3
15	dbj\|AK035752.1\| Mus musculus 16 days neonate cerebellum cDNA, RI...	42	2.3
16	dbj\|AK044767.1\| Mus musculus adult retina cDNA, RIKEN full-lengt...	42	2.3
17	gb\|AC021878.4\| Homo sapiens BAC clone RP11-18N21 from 4, complet...	42	2.3
18	ref\|XM_230464.3\| PREDICTED: Rattus norvegicus similar to RIKEN c...	42	2.3
19	gb\|U65989.2\|CFU65989 Canis familiaris articular cartilage aggrec...	42	2.3
20	gb\|AC103623.13\| Mus musculus chromosome 5, clone RP24-253A20, co...	42	2.3
21	emb\|AL772264.8\| Mouse DNA sequence from clone RP23-15I21 on chro...	42	2.3
22	gb\|AC166253.18\| Mus musculus BAC RP23-231M6 (Roswell Park Cance...	40	9.3
23	gb\|AY730338.1\| Solanum tuberosum strain P6/210 clone BAC BA47f2,...	40	9.3
24	gb\|AC149576.3\| Medicago truncatula chromosome 2 BAC clone mte1-1...	40	9.3
25	gb\|AC122243.3\| Mus musculus BAC clone RP23-148C10 from chromosom...	40	9.3
26	gb\|AC123936.4\| Mus musculus BAC clone RP23-408L3 from chromosome...	40	9.3
27	gb\|AC144726.6\| Medicago truncatula clone mth2-7k13, complete seq...	40	9.3
28	gb\|AC150505.12\| Medicago truncatula clone mth2-99l2, complete se...	40	9.3
29	emb\|AL626787.9\| Human DNA sequence from clone RP11-375H19 on chr...	40	9.3
30	emb\|AL592429.6\| Human DNA sequence from clone RP11-12A2 on chrom...	40	9.3
31	emb\|AL590553.8\| Human DNA sequence from clone RP11-272G1 on chro...	40	9.3
32	gb\|AC104574.4\| Homo sapiens chromosome 15, clone RP11-259A24, co...	40	9.3
33	emb\|AL031054.1\|HS48G12 Human DNA sequence from clone RP1-48G12 o...	40	9.3
34	gb\|AC007998.10\| Homo sapiens chromosome 18, clone RP11-322E11, c...	40	9.3
35	emb\|BX005427.19\| Zebrafish DNA sequence from clone DKEY-24F17 in...	40	9.3
36	emb\|AL592443.2\| Mouse DNA sequence from clone RP23-142M3 on chro...	40	9.3
37	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	9.3
38	emb\|BX784023.10\| Zebrafish DNA sequence from clone DKEY-163F12 i...	40	9.3
39	emb\|BX548016.7\| Zebrafish DNA sequence from clone DKEY-97O7 in l...	40	9.3
40	gb\|AC118591.7\| Mus musculus chromosome 3, clone RP24-93G19, comp...	40	9.3
41	emb\|AL845306.9\| Zebrafish DNA sequence from clone DKEY-217M5 in ...	40	9.3
42	emb\|AL929182.4\| Zebrafish DNA sequence from clone CH211-195E3 in...	40	9.3
43	gb\|AC165360.3\| Mus musculus BAC clone RP23-110L20 from chromosom...	40	9.3
44	emb\|CR524482.18\| Zebrafish DNA sequence from clone DKEY-109F24 i...	40	9.3

>dbj|AK072887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148F05, full
            insert sequence
          Length = 1998

 Score =  353 bits (178), Expect = 5e-94
 Identities = 270/301 (89%)
 Strand = Plus / Minus

                                                                        
Query: 375  gaagttcatcaagtacctcggtaaaatcatctggagggggacatgagaattcaagtgcct 434
            |||||||||  |||||||| |||||||||||||| ||||| ||||||||||||||   ||
Sbjct: 1297 gaagttcattgagtacctcagtaaaatcatctggtggggggcatgagaattcaaggatct 1238

                                                                        
Query: 435  ttcctgaatgaggatgcttgaatccaagcaatgcagcatggagacatggcctgtctatct 494
            ||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 1237 ttcctgagtgaggatgcttaaatccaagcaacgcggcatggagacatggcctgtctatct 1178

                                                                        
Query: 495  ttgataccagatttgaaagatcgccatgatattttgaaggagttctgggtctcagaagtg 554
            |||||| || |||||||||||| | ||||||| ||||||||||||||||||||| |||||
Sbjct: 1177 ttgatatcatatttgaaagatcacaatgatatcttgaaggagttctgggtctcaaaagtg 1118

                                                                        
Query: 555  acaatgtcatgcttttggtacctccatatgtttcatcaccaagcagggggttccctagat 614
            |||||| |||||||||||||||||| ||||||||||| ||||| |||||  ||||||| |
Sbjct: 1117 acaatgccatgcttttggtacctccgtatgtttcatccccaagaaggggaatccctaggt 1058

                                                                        
Query: 615  attttgcatgtgctcggatctggtgagtgcgccctgtctncaatctccactctaccagtg 674
            | |||||||||||||| ||||||||||| || ||||||| ||||||||||||||| ||||
Sbjct: 1057 actttgcatgtgctcgaatctggtgagttcgtcctgtctccaatctccactctactagtg 998

             
Query: 675  c 675
            |
Sbjct: 997  c 997

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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
             sequence
          Length = 143507

 Score =  218 bits (110), Expect = 2e-53
 Identities = 161/178 (90%)
 Strand = Plus / Plus

                                                                         
Query: 458   ccaagcaatgcagcatggagacatggcctgtctatctttgataccagatttgaaagatcg 517
             |||||||| || ||||||||||||||||||||||||||||||| || |||||||||||| 
Sbjct: 46391 ccaagcaacgcggcatggagacatggcctgtctatctttgatatcatatttgaaagatca 46450

                                                                         
Query: 518   ccatgatattttgaaggagttctgggtctcagaagtgacaatgtcatgcttttggtacct 577
             | ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 46451 caatgatatcttgaaggagttctgggtctcaaaagtgacaatgccatgcttttggtacct 46510

                                                                       
Query: 578   ccatatgtttcatcaccaagcagggggttccctagatattttgcatgtgctcggatct 635
             || ||||||||||| ||||| |||||  ||||||| || |||||||||||||| ||||
Sbjct: 46511 ccgtatgtttcatccccaagaaggggaatccctaggtactttgcatgtgctcgaatct 46568



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 375   gaagttcatcaagtacctcggtaaaatcatctggagggggacatgagaattcaagtgcct 434
             |||||||||  |||||||| |||||||||||||| ||||| ||||||||||||||   ||
Sbjct: 46236 gaagttcattgagtacctcagtaaaatcatctggtggggggcatgagaattcaaggatct 46295

                                     
Query: 435   ttcctgaatgaggatgcttgaatc 458
             ||||||| ||||||||||| ||||
Sbjct: 46296 ttcctgagtgaggatgcttaaatc 46319



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 634   ctggtgagtgcgccctgtctncaatctccactctaccagtgc 675
             ||||||||| || ||||||| ||||||||||||||| |||||
Sbjct: 46848 ctggtgagttcgtcctgtctccaatctccactctactagtgc 46889

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  218 bits (110), Expect = 2e-53
 Identities = 161/178 (90%)
 Strand = Plus / Plus

                                                                            
Query: 458      ccaagcaatgcagcatggagacatggcctgtctatctttgataccagatttgaaagatcg 517
                |||||||| || ||||||||||||||||||||||||||||||| || |||||||||||| 
Sbjct: 29965694 ccaagcaacgcggcatggagacatggcctgtctatctttgatatcatatttgaaagatca 29965753

                                                                            
Query: 518      ccatgatattttgaaggagttctgggtctcagaagtgacaatgtcatgcttttggtacct 577
                | ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 29965754 caatgatatcttgaaggagttctgggtctcaaaagtgacaatgccatgcttttggtacct 29965813

                                                                          
Query: 578      ccatatgtttcatcaccaagcagggggttccctagatattttgcatgtgctcggatct 635
                || ||||||||||| ||||| |||||  ||||||| || |||||||||||||| ||||
Sbjct: 29965814 ccgtatgtttcatccccaagaaggggaatccctaggtactttgcatgtgctcgaatct 29965871



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                            
Query: 375      gaagttcatcaagtacctcggtaaaatcatctggagggggacatgagaattcaagtgcct 434
                |||||||||  |||||||| |||||||||||||| ||||| ||||||||||||||   ||
Sbjct: 29965539 gaagttcattgagtacctcagtaaaatcatctggtggggggcatgagaattcaaggatct 29965598

                                        
Query: 435      ttcctgaatgaggatgcttgaatc 458
                ||||||| ||||||||||| ||||
Sbjct: 29965599 ttcctgagtgaggatgcttaaatc 29965622



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 634      ctggtgagtgcgccctgtctncaatctccactctaccagtgc 675
                ||||||||| || ||||||| ||||||||||||||| |||||
Sbjct: 29966151 ctggtgagttcgtcctgtctccaatctccactctactagtgc 29966192

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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541C02
          Length = 150660

 Score =  218 bits (110), Expect = 2e-53
 Identities = 161/178 (90%)
 Strand = Plus / Plus

                                                                         
Query: 458   ccaagcaatgcagcatggagacatggcctgtctatctttgataccagatttgaaagatcg 517
             |||||||| || ||||||||||||||||||||||||||||||| || |||||||||||| 
Sbjct: 41842 ccaagcaacgcggcatggagacatggcctgtctatctttgatatcatatttgaaagatca 41901

                                                                         
Query: 518   ccatgatattttgaaggagttctgggtctcagaagtgacaatgtcatgcttttggtacct 577
             | ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 41902 caatgatatcttgaaggagttctgggtctcaaaagtgacaatgccatgcttttggtacct 41961

                                                                       
Query: 578   ccatatgtttcatcaccaagcagggggttccctagatattttgcatgtgctcggatct 635
             || ||||||||||| ||||| |||||  ||||||| || |||||||||||||| ||||
Sbjct: 41962 ccgtatgtttcatccccaagaaggggaatccctaggtactttgcatgtgctcgaatct 42019



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 375   gaagttcatcaagtacctcggtaaaatcatctggagggggacatgagaattcaagtgcct 434
             |||||||||  |||||||| |||||||||||||| ||||| ||||||||||||||   ||
Sbjct: 41687 gaagttcattgagtacctcagtaaaatcatctggtggggggcatgagaattcaaggatct 41746

                                     
Query: 435   ttcctgaatgaggatgcttgaatc 458
             ||||||| ||||||||||| ||||
Sbjct: 41747 ttcctgagtgaggatgcttaaatc 41770



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 634   ctggtgagtgcgccctgtctncaatctccactctaccagtgc 675
             ||||||||| || ||||||| ||||||||||||||| |||||
Sbjct: 42299 ctggtgagttcgtcctgtctccaatctccactctactagtgc 42340

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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score =  218 bits (110), Expect = 2e-53
 Identities = 161/178 (90%)
 Strand = Plus / Plus

                                                                          
Query: 458    ccaagcaatgcagcatggagacatggcctgtctatctttgataccagatttgaaagatcg 517
              |||||||| || ||||||||||||||||||||||||||||||| || |||||||||||| 
Sbjct: 161207 ccaagcaacgcggcatggagacatggcctgtctatctttgatatcatatttgaaagatca 161266

                                                                          
Query: 518    ccatgatattttgaaggagttctgggtctcagaagtgacaatgtcatgcttttggtacct 577
              | ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 161267 caatgatatcttgaaggagttctgggtctcaaaagtgacaatgccatgcttttggtacct 161326

                                                                        
Query: 578    ccatatgtttcatcaccaagcagggggttccctagatattttgcatgtgctcggatct 635
              || ||||||||||| ||||| |||||  ||||||| || |||||||||||||| ||||
Sbjct: 161327 ccgtatgtttcatccccaagaaggggaatccctaggtactttgcatgtgctcgaatct 161384



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                          
Query: 375    gaagttcatcaagtacctcggtaaaatcatctggagggggacatgagaattcaagtgcct 434
              |||||||||  |||||||| |||||||||||||| ||||| ||||||||||||||   ||
Sbjct: 161052 gaagttcattgagtacctcagtaaaatcatctggtggggggcatgagaattcaaggatct 161111

                                      
Query: 435    ttcctgaatgaggatgcttgaatc 458
              ||||||| ||||||||||| ||||
Sbjct: 161112 ttcctgagtgaggatgcttaaatc 161135



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 634    ctggtgagtgcgccctgtctncaatctccactctaccagtgc 675
              ||||||||| || ||||||| ||||||||||||||| |||||
Sbjct: 161664 ctggtgagttcgtcctgtctccaatctccactctactagtgc 161705

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>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence
          Length = 190235

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    aaattcctggagcttctttct 163
              |||||||||||||||||||||
Sbjct: 174474 aaattcctggagcttctttct 174494

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>ref|XM_422070.1| PREDICTED: Gallus gallus ribosomal protein L37a (LOC396031), mRNA
          Length = 3338

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 580 atatgtttcatcaccaagcag 600
           |||||||||||||||||||||
Sbjct: 570 atatgtttcatcaccaagcag 590

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>gb|AC142110.4| Mus musculus BAC clone RP24-104I11 from chromosome 7, complete sequence
          Length = 177085

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   atgccacaagtccaaacacct 261
             |||||||||||||||||||||
Sbjct: 58284 atgccacaagtccaaacacct 58264

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>ref|XM_536187.2| PREDICTED: Canis familiaris aggrecan keratan sulfate domain (AGC1),
            mRNA
          Length = 7121

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  agtcacacttgagcagcattgtcac 341
            |||||||| ||||||||||||||||
Sbjct: 6461 agtcacacctgagcagcattgtcac 6485

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>emb|AL353135.32| Human DNA sequence from clone RP11-63L7 on chromosome 6 Contains the
             PROL2 gene for proline rich 2 (proline-rich protein with
             nuclear targeting signal), the gene for NB4
             apoptosis/differentiation related protein (PNAS-145), the
             gene for serine-arginine repressor protein (35kDa)
             (SRrp35), the gene for a novel protein similar to putative
             amidohydrolase, the 3' end of the GABRR1 gene for
             gamma-aminobutyric acid (GABA) receptor, rho 1 and 3 CpG
             islands, complete sequence
          Length = 127653

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 98    taaacatagaaaagagcactaaaaatatg 126
             ||||||||||||||| |||||||||||||
Sbjct: 41274 taaacatagaaaaga-cactaaaaatatg 41247

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>ref|NM_173450.1| Mus musculus RNA pseudouridylate synthase domain containing 2
            (Rpusd2), mRNA
          Length = 2702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 627  ctcggatctggtgagtgcgccctgt 651
            ||||||||||||||||||| |||||
Sbjct: 1194 ctcggatctggtgagtgcgacctgt 1170

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>gb|AC079399.5| Homo sapiens BAC clone RP11-414P19 from 4, complete sequence
          Length = 169035

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 98     taaacatagaaaagagcactaaaaatatg 126
              ||||||||||||||| || ||||||||||
Sbjct: 112398 taaacatagaaaagaacaataaaaatatg 112426

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>dbj|AK043340.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730086P06 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 1862

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 627  ctcggatctggtgagtgcgccctgt 651
            ||||||||||||||||||| |||||
Sbjct: 1161 ctcggatctggtgagtgcgacctgt 1137

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>dbj|AK035800.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630005H21 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 2634

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 627  ctcggatctggtgagtgcgccctgt 651
            ||||||||||||||||||| |||||
Sbjct: 1132 ctcggatctggtgagtgcgacctgt 1108

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>dbj|AK035752.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630001E10 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 2272

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 627  ctcggatctggtgagtgcgccctgt 651
            ||||||||||||||||||| |||||
Sbjct: 1132 ctcggatctggtgagtgcgacctgt 1108

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>dbj|AK044767.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930041C02 product:hypothetical Pseudouridine
            synthase containing protein, full insert sequence
          Length = 2702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 627  ctcggatctggtgagtgcgccctgt 651
            ||||||||||||||||||| |||||
Sbjct: 1194 ctcggatctggtgagtgcgacctgt 1170

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>gb|AC021878.4| Homo sapiens BAC clone RP11-18N21 from 4, complete sequence
          Length = 161391

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 107   aaaagagcactaaaaatatgtctcc 131
             |||||| ||||||||||||||||||
Sbjct: 69599 aaaagaccactaaaaatatgtctcc 69575

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>ref|XM_230464.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921503C21;
            CG6187-like (predicted) (LOC311326), mRNA
          Length = 1781

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 627  ctcggatctggtgagtgcgccctgt 651
            ||||||||||||||||||| |||||
Sbjct: 1204 ctcggatctggtgagtgcgacctgt 1180

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>gb|U65989.2|CFU65989 Canis familiaris articular cartilage aggrecan precursor, mRNA,
            complete cds
          Length = 7104

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  agtcacacttgagcagcattgtcac 341
            |||||||| ||||||||||||||||
Sbjct: 6464 agtcacacctgagcagcattgtcac 6488

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>gb|AC103623.13| Mus musculus chromosome 5, clone RP24-253A20, complete sequence
          Length = 170641

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   gcattttatgtgttctccatt 310
             |||||||||||||||||||||
Sbjct: 86555 gcattttatgtgttctccatt 86575

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>emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chromosome 2, complete
              sequence
          Length = 189540

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 627    ctcggatctggtgagtgcgccctgt 651
              ||||||||||||||||||| |||||
Sbjct: 173935 ctcggatctggtgagtgcgacctgt 173959

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>gb|AC166253.18| Mus musculus  BAC RP23-231M6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207999

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 211   cactccatcagtttggccactcactcag 238
             ||||||||||||||||| |||| |||||
Sbjct: 43744 cactccatcagtttggcgactctctcag 43771

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>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    ttacttaaacatagaaaaga 112
             ||||||||||||||||||||
Sbjct: 60761 ttacttaaacatagaaaaga 60780

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>gb|AC149576.3| Medicago truncatula chromosome 2 BAC clone mte1-17c12, complete
             sequence
          Length = 75005

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   attttatgtgttctccattt 311
             ||||||||||||||||||||
Sbjct: 26536 attttatgtgttctccattt 26517

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>gb|AC122243.3| Mus musculus BAC clone RP23-148C10 from chromosome 17, complete sequence
          Length = 204584

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 474    ggagacatggcctgtctatctttg 497
              ||||||||||||||||||| ||||
Sbjct: 188654 ggagacatggcctgtctatatttg 188677

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>gb|AC123936.4| Mus musculus BAC clone RP23-408L3 from chromosome 15, complete sequence
          Length = 221204

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ttcctggagcttctttcttg 165
              ||||||||||||||||||||
Sbjct: 122674 ttcctggagcttctttcttg 122693

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>gb|AC144726.6| Medicago truncatula clone mth2-7k13, complete sequence
          Length = 138586

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   attttatgtgttctccattt 311
             ||||||||||||||||||||
Sbjct: 15278 attttatgtgttctccattt 15259

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>gb|AC150505.12| Medicago truncatula clone mth2-99l2, complete sequence
          Length = 111277

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   attttatgtgttctccattt 311
             ||||||||||||||||||||
Sbjct: 83255 attttatgtgttctccattt 83236

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>emb|AL626787.9| Human DNA sequence from clone RP11-375H19 on chromosome 1 Contains the
             3' end of a novel gene, complete sequence
          Length = 71885

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    ctaaaatgattttaacacac 64
             ||||||||||||||||||||
Sbjct: 69158 ctaaaatgattttaacacac 69177

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>emb|AL592429.6| Human DNA sequence from clone RP11-12A2 on chromosome 6 Contains a DnaJ
             (Hsp40) homolog subfamily C member 7 (DNAJC7) pseudogene,
             the CITED2 gene for Cbp/p300-interacting transactivator
             with Glu/Asp-rich carboxy-terminal domain 2 (MRG1, P35SRJ)
             and a putative novel gene. Contains two CpG islands,
             complete sequence
          Length = 167460

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   gaatccaagcaatgcagcat 473
             ||||||||||||||||||||
Sbjct: 70051 gaatccaagcaatgcagcat 70070

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>emb|AL590553.8| Human DNA sequence from clone RP11-272G1 on chromosome 6, complete
             sequence
          Length = 171882

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   aaaagagcactaaaaatatg 126
             ||||||||||||||||||||
Sbjct: 98094 aaaagagcactaaaaatatg 98113

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>gb|AC104574.4| Homo sapiens chromosome 15, clone RP11-259A24, complete sequence
          Length = 152130

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 98    taaacatagaaaaga-gcactaaaaata 124
             ||||||||||||||| ||||||||||||
Sbjct: 68387 taaacatagaaaagatgcactaaaaata 68414

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>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3
              Contains a CpG island, complete sequence
          Length = 199016

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    tttggccactcactcagaga 241
              ||||||||||||||||||||
Sbjct: 138479 tttggccactcactcagaga 138460

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>gb|AC007998.10| Homo sapiens chromosome 18, clone RP11-322E11, complete sequence
          Length = 207799

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   tctgggtctcagaagtgaca 557
             ||||||||||||||||||||
Sbjct: 89460 tctgggtctcagaagtgaca 89479

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>emb|BX005427.19| Zebrafish DNA sequence from clone DKEY-24F17 in linkage group 20
            Contains the gene for a novel protein similar to elastase
            2, the 3' end of the alas2 gene for aminolevulinate,
            delta-, synthetase 2, the gene for a novel elastase
            protein (zgc:637440), two novel genes and two CpG
            islands, complete sequence
          Length = 134851

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  tttgtattagtcacacttga 328
            ||||||||||||||||||||
Sbjct: 5999 tttgtattagtcacacttga 5980

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>emb|AL592443.2| Mouse DNA sequence from clone RP23-142M3 on chromosome 13, complete
              sequence
          Length = 164416

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 458    ccaagcaatgcagcatggagacat 481
              ||||| ||||||||||||||||||
Sbjct: 146341 ccaagtaatgcagcatggagacat 146364

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                              
Query: 629     cggatctggtgagtgcgccctgtctncaatc 659
               ||||||||||| |||||||| |||| |||||
Sbjct: 1719838 cggatctggtgggtgcgcccggtctccaatc 1719808

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>emb|BX784023.10| Zebrafish DNA sequence from clone DKEY-163F12 in linkage group 8,
              complete sequence
          Length = 231254

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    tttgtattagtcacacttga 328
              ||||||||||||||||||||
Sbjct: 123704 tttgtattagtcacacttga 123685

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>emb|BX548016.7| Zebrafish DNA sequence from clone DKEY-97O7 in linkage group 7,
             complete sequence
          Length = 125478

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   cctccatatgtttcatcacc 594
             ||||||||||||||||||||
Sbjct: 62071 cctccatatgtttcatcacc 62052

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>gb|AC118591.7| Mus musculus chromosome 3, clone RP24-93G19, complete sequence
          Length = 208878

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 530   gaaggagttctgggtctcag 549
             ||||||||||||||||||||
Sbjct: 50878 gaaggagttctgggtctcag 50859

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>emb|AL845306.9| Zebrafish DNA sequence from clone DKEY-217M5 in linkage group 20,
              complete sequence
          Length = 186675

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     tgattttaacacactgcatt 70
              ||||||||||||||||||||
Sbjct: 114127 tgattttaacacactgcatt 114108

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>emb|AL929182.4| Zebrafish DNA sequence from clone CH211-195E3 in linkage group 20,
              complete sequence
          Length = 225515

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    cctgaatgaggatgcttgaa 456
              ||||||||||||||||||||
Sbjct: 135754 cctgaatgaggatgcttgaa 135773

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>gb|AC165360.3| Mus musculus BAC clone RP23-110L20 from chromosome 17, complete sequence
          Length = 217732

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 474    ggagacatggcctgtctatctttg 497
              ||||||||||||||||||| ||||
Sbjct: 129618 ggagacatggcctgtctatatttg 129595

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>emb|CR524482.18| Zebrafish DNA sequence from clone DKEY-109F24 in linkage group 15,
             complete sequence
          Length = 125769

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    aaacatagaaaagagcactaaaaa 122
             |||||||||||| |||||||||||
Sbjct: 74111 aaacatagaaaacagcactaaaaa 74088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,420,516
Number of Sequences: 3902068
Number of extensions: 6420516
Number of successful extensions: 124007
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 123868
Number of HSP's gapped (non-prelim): 141
length of query: 679
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 656
effective length of database: 17,143,297,704
effective search space: 11246003293824
effective search space used: 11246003293824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result