No.
Definition
Score (bits)
E Value
1 gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p...
1403
0.0
2 gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf...
807
0.0
3 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
159
2e-35
4 emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb...
159
2e-35
5 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
159
2e-35
6 emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E...
159
2e-35
7 emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003...
86
2e-13
8 ref|XM_470970.1| Oryza sativa (japonica cultivar-group), predic...
64
7e-07
9 emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4,...
64
7e-07
10 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
64
7e-07
11 dbj|AK069960.1| Oryza sativa (japonica cultivar-group) cDNA clon...
58
4e-05
12 ref|XM_474640.1| Oryza sativa (japonica cultivar-group), predic...
50
0.011
13 emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4,...
50
0.011
14 dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clon...
50
0.011
15 dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clon...
50
0.011
16 gb|U63634.1|MCU63634 Mesembryanthemum crystallinum inositol meth...
50
0.011
17 gb|M87340.1|CIPIMT1A Mesembryanthemum crystallinum methyl transf...
50
0.011
18 gb|AF067968.1|AF067968 Mesembryanthemum crystallinum caffeic aci...
46
0.17
19 emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chr...
46
0.17
20 emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl...
44
0.67
21 gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome...
42
2.6
22 ref|XM_664595.1| Plasmodium berghei strain ANKA hypothetical pro...
42
2.6
23 dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RI...
42
2.6
24 gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosom...
42
2.6
25 dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...
42
2.6
26 gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1...
42
2.6
>gb|U54767.1 |HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
complete cds
Length = 5238
Score = 807 bits (407), Expect = 0.0
Identities = 437/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 1 ttatgcggtcctggtcttttatgatagaaataataaaatgaaaatc-taaatgagcacgt 59
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4873 ttatgcggtccatggcttttatgatagaaataataaaatgaaaatcataaatgagcacgt 4814
Query: 60 gagctagcagctcttattcgggacattattcgcnnnnnnngaagtgctcctattcgggac 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4813 gagctagcagctcttattcgggacattattcgcaaaaaaagaagtgctcctattcgggac 4754
Query: 120 tataccactctggtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4753 tataccactctggtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaat 4694
Query: 180 atgtaggttttcttgatgccaccggtaaatccagcttgtttggctagcctggcaaactcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4693 atgtaggttttcttgatgccaccggtaaatccagcttgtttggctagcctggcaaactcc 4634
Query: 240 ttctccgtcctctgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4633 ttctccgtcctctgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaat 4574
Query: 300 gcatcccgcgctgtgagagacgagtctgggttctccgggaggataccatccacgacgatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 gcatcccgcgctgtgagagacgagtctgggttctccgggaggataccatccacgacgatc 4514
Query: 360 accttcccgtcttttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 accttcccgtcttttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcg 4454
Query: 420 tcgttaagcataagcgtgatccactgca 447
||||||||||||||||||||||||||||
Sbjct: 4453 tcgttaagcataagcgtgatccactgca 4426
Score = 480 bits (242), Expect = e-132
Identities = 251/253 (99%), Gaps = 1/253 (0%)
Strand = Plus / Minus
Query: 507 cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 3591
Query: 567 tgcttgtacttagaggtgatcatccctagggtggagccggtgccaccacccgacgtccac 626
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3590 tgcttgtacttagaggtgatcatccctagggtggagccggtgccaccacc-gacgtccac 3532
Query: 627 aagccgctgcacaccatcgaatcccttgaagcgctcgagcatcttggtgaccaggatcac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3531 aagccgctgcacaccatcgaatcccttgaagcgctcgagcatcttggtgaccaggatcac 3472
Query: 687 agagtgctgagccatggcattgtcgaacagtgttcccaaccgctggttcttncccatgta 746
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3471 agagtgctgagccatggcattgtcgaacagtgttcccaaccgctggttcttccccatgta 3412
Query: 747 ctcgtagtagggc 759
|||||||||||||
Sbjct: 3411 ctcgtagtagggc 3399
Score = 135 bits (68), Expect = 2e-28
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 443 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 3851
Query: 503 gactcctg 510
||||||||
Sbjct: 3850 gactcctg 3843
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 159 bits (80), Expect = 2e-35
Identities = 191/227 (84%), Gaps = 1/227 (0%)
Strand = Plus / Minus
Query: 530 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 589
|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct: 5364332 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364273
Query: 590 ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 649
||| |||||||| ||| || ||||| ||| || || ||| |||| || || |||||||
Sbjct: 5364272 ccccagggtggatccgtcacccccacc-gacatcgacgagctgctggacgccgtcgaatc 5364214
Query: 650 ccttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgt 709
| | |||||| |||||||||||| ||||||| ||||| || ||||| |||||||| | ||
Sbjct: 5364213 cttggaagcgttcgagcatcttgctgaccagaatcactgaatgctgcgccatggcgtggt 5364154
Query: 710 cgaacagtgttcccaaccgctggttcttncccatgtactcgtagtag 756
||||||| | |||| |||||||||||| |||||||||||| |||||
Sbjct: 5364153 cgaacagcgcgcccagccgctggttcttccccatgtactcgaagtag 5364107
Score = 97.6 bits (49), Expect = 5e-17
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 151 tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 210
||||||||||||| || ||||| |||||||||||||| | | | ||||||||| |
Sbjct: 5374724 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374665
Query: 211 cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 270
|||||| ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374664 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374605
Query: 271 gcacaaacatgatgatatccaaggtgaatgcatcccg 307
| ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374604 ggacaaacatgatcatatccatggtgaatgaatcccg 5374568
Score = 85.7 bits (43), Expect = 2e-13
Identities = 184/230 (80%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 530 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 589
|||||| ||||||||||||||||||||||| | || ||||| ||| ||||||||||
Sbjct: 5172160 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172101
Query: 590 ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 649
||| |||||||| ||| ||| ||||| | | || || |||||||| | |||||||| |
Sbjct: 5172100 ccccagggtggatccgtcgcctccaccgg-catcgacgagccgctggatgccatcgaaac 5172042
Query: 650 ccttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgt 709
| | |||||| |||||||||||| | || ||||| | |||||||| |||||||| | ||
Sbjct: 5172041 cttcgaagcgttcgagcatcttgcgggcccggatcgccgagtgctgcgccatggcgtggt 5171982
Query: 710 cgaacagtgttcccaaccgctggttcttncccatgtactcgtagtagggc 759
||||||| |||| || || |||||| || |||||||||| |||||||
Sbjct: 5171981 cgaacagcccgcccagcctcttgttcttccctatgtactcgtggtagggc 5171932
Score = 65.9 bits (33), Expect = 2e-07
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 142 gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 201
||||||| |||||||||| ||||| ||||| |||||||||||||| | || | ||
Sbjct: 5173415 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173356
Query: 202 cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 261
||||||| |||| | ||||| ||| | |||||||| | ||| ||||| ||||| ||
Sbjct: 5173355 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173296
Query: 262 ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 310
|||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173295 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173247
Score = 56.0 bits (28), Expect = 2e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 443 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 502
|||||| |||| ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172597 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172538
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 159 bits (80), Expect = 2e-35
Identities = 191/227 (84%), Gaps = 1/227 (0%)
Strand = Plus / Minus
Query: 530 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 589
|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct: 5364321 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364262
Query: 590 ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 649
||| |||||||| ||| || ||||| ||| || || ||| |||| || || |||||||
Sbjct: 5364261 ccccagggtggatccgtcacccccacc-gacatcgacgagctgctggacgccgtcgaatc 5364203
Query: 650 ccttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgt 709
| | |||||| |||||||||||| ||||||| ||||| || ||||| |||||||| | ||
Sbjct: 5364202 cttggaagcgttcgagcatcttgctgaccagaatcactgaatgctgcgccatggcgtggt 5364143
Query: 710 cgaacagtgttcccaaccgctggttcttncccatgtactcgtagtag 756
||||||| | |||| |||||||||||| |||||||||||| |||||
Sbjct: 5364142 cgaacagcgcgcccagccgctggttcttccccatgtactcgaagtag 5364096
Score = 97.6 bits (49), Expect = 5e-17
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 151 tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 210
||||||||||||| || ||||| |||||||||||||| | | | ||||||||| |
Sbjct: 5374713 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374654
Query: 211 cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 270
|||||| ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374653 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374594
Query: 271 gcacaaacatgatgatatccaaggtgaatgcatcccg 307
| ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374593 ggacaaacatgatcatatccatggtgaatgaatcccg 5374557
Score = 85.7 bits (43), Expect = 2e-13
Identities = 184/230 (80%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 530 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 589
|||||| ||||||||||||||||||||||| | || ||||| ||| ||||||||||
Sbjct: 5172142 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172083
Query: 590 ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 649
||| |||||||| ||| ||| ||| ||| | || || |||||||| | |||||||| |
Sbjct: 5172082 ccccagggtggatccgtcgcctcca-ccggcatcgacgagccgctggatgccatcgaaac 5172024
Query: 650 ccttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgt 709
| | |||||| |||||||||||| | || ||||| | |||||||| |||||||| | ||
Sbjct: 5172023 cttcgaagcgttcgagcatcttgcgggcccggatcgccgagtgctgcgccatggcgtggt 5171964
Query: 710 cgaacagtgttcccaaccgctggttcttncccatgtactcgtagtagggc 759
||||||| |||| || || |||||| || |||||||||| |||||||
Sbjct: 5171963 cgaacagcccgcccagcctcttgttcttccctatgtactcgtggtagggc 5171914
Score = 65.9 bits (33), Expect = 2e-07
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 142 gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 201
||||||| |||||||||| ||||| ||||| |||||||||||||| | || | ||
Sbjct: 5173397 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173338
Query: 202 cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 261
||||||| |||| | ||||| ||| | |||||||| | ||| ||||| ||||| ||
Sbjct: 5173337 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173278
Query: 262 ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 310
|||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173277 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173229
Score = 56.0 bits (28), Expect = 2e-04
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 443 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 502
|||||| |||| ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172579 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172520
>emb|AL713947.3 |CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 124959
Score = 85.7 bits (43), Expect = 2e-13
Identities = 184/230 (80%), Gaps = 1/230 (0%)
Strand = Plus / Plus
Query: 530 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 589
|||||| ||||||||||||||||||||||| | || ||||| ||| ||||||||||
Sbjct: 91439 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 91498
Query: 590 ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 649
||| |||||||| ||| ||| ||||| | | || || |||||||| | |||||||| |
Sbjct: 91499 ccccagggtggatccgtcgcctccaccgg-catcgacgagccgctggatgccatcgaaac 91557
Query: 650 ccttgaagcgctcgagcatcttggtgaccaggatcacagagtgctgagccatggcattgt 709
| | |||||| |||||||||||| | || ||||| | |||||||| |||||||| | ||
Sbjct: 91558 cttcgaagcgttcgagcatcttgcgggcccggatcgccgagtgctgcgccatggcgtggt 91617
Query: 710 cgaacagtgttcccaaccgctggttcttncccatgtactcgtagtagggc 759
||||||| |||| || || |||||| || |||||||||| |||||||
Sbjct: 91618 cgaacagcccgcccagcctcttgttcttccctatgtactcgtggtagggc 91667
Score = 65.9 bits (33), Expect = 2e-07
Identities = 135/169 (79%)
Strand = Plus / Plus
Query: 142 gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 201
||||||| |||||||||| ||||| ||||| |||||||||||||| | || | ||
Sbjct: 90184 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 90243
Query: 202 cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 261
||||||| |||| | ||||| ||| | |||||||| | ||| ||||| ||||| ||
Sbjct: 90244 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 90303
Query: 262 ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 310
|||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 90304 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 90352
Score = 56.0 bits (28), Expect = 2e-04
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 443 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 502
|||||| |||| ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 91002 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 91061
>gb|AE017126.1 | Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
Length = 1751080
Score = 42.1 bits (21), Expect = 2.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 169 agttgaagaatatgtaggttttctt 193
|||||||||| ||||||||||||||
Sbjct: 313473 agttgaagaaaatgtaggttttctt 313449
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,797,273
Number of Sequences: 3902068
Number of extensions: 5797273
Number of successful extensions: 125002
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124759
Number of HSP's gapped (non-prelim): 230
length of query: 759
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 736
effective length of database: 17,143,297,704
effective search space: 12617467110144
effective search space used: 12617467110144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)