ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18k01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AXL1_YEAST (P40851) Putative protease AXL1 (EC 3.4.99.-) 33 0.63
2KCY_MYCMS (Q6MTJ7) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidin... 33 1.1
3GPR1_RAT (P46090) Probable G-protein coupled receptor 1 30 7.0
4HYPA_CLOPE (Q46205) Protein hypA 30 7.0
5MUT7_CAEEL (P34607) Probable exonuclease mut-7 (EC 3.1.-.-) 30 9.1

>AXL1_YEAST (P40851) Putative protease AXL1 (EC 3.4.99.-)|
          Length = 1208

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
 Frame = -3

Query: 607 SLLKPDQLAEVIDTFKLKISEDRLMSRCTKCNGIFIQKPLTLDEAMEASKGFQVIPSCLF 428
           + LK   L +++ +F  + SED  M  C+K +GI +Q  L         KGF+ +   + 
Sbjct: 425 TFLKEQNLIDLV-SFLYQSSEDLPMEECSKLSGI-LQDDLECLTPPNIFKGFKSLIE-ID 481

Query: 427 NRNMEFWKCTDCNQLYWEG--TQYHNAVQKFMSVCNI 323
           + N+E ++ T  N  +W G   ++ N ++ FM+  N+
Sbjct: 482 DPNIEKYENTKANIQWWTGQAIKFQNFLKSFMNHDNM 518



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>KCY_MYCMS (Q6MTJ7) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine|
           monophosphate kinase) (CMP kinase)
          Length = 222

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
 Frame = -3

Query: 679 ILLTRDAKLIKYQYLATNQVYRVKS---------LLKPDQLAEVIDTFKLKISEDRLMSR 527
           ++  + A+++ YQ++ T  +YR  +         +   DQ+ +++D+F  KIS++++   
Sbjct: 18  VIFKKVARILNYQFVDTGLMYRAFTWYCLFKNIDINNQDQIIKLLDSFDYKISDEQIF-- 75

Query: 526 CTKCNGIFIQKPLTLDEAMEASKGFQVIP 440
               N I +   L   E +       +IP
Sbjct: 76  ---VNNINVTNKLISSEILNVINKITIIP 101



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>GPR1_RAT (P46090) Probable G-protein coupled receptor 1|
          Length = 353

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 262 HHKATWQAFLFGWRCNPLLLFSDVHVLMLFCT 167
           HH  TW  FLFG+   PLL  S  ++ ++F T
Sbjct: 201 HHVLTWVKFLFGYLL-PLLTMSSCYLCLIFKT 231



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>HYPA_CLOPE (Q46205) Protein hypA|
          Length = 973

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 12  DRDLSECIQGDIIERAVSYYMLNFTY 89
           D+ +S  I+GDI   AVSYY+ NFTY
Sbjct: 893 DQPISNGIKGDI---AVSYYLSNFTY 915



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>MUT7_CAEEL (P34607) Probable exonuclease mut-7 (EC 3.1.-.-)|
          Length = 910

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 592 DQLAEVIDTFKLKISEDRLMSRCTKCN 512
           DQL E  D F + I  + +  RCT+CN
Sbjct: 746 DQLIEFFDLFNVDIRPEDVYPRCTECN 772


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,232,154
Number of Sequences: 219361
Number of extensions: 2096288
Number of successful extensions: 4833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4830
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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