>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 326      cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 378
                ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 26459479 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 26459531

>dbj|AK072503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023126H05, full
            insert sequence
          Length = 1525

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 326  cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 378
            ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 1009 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 957

>dbj|AK059973.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-H11, full
           insert sequence
          Length = 1028

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 326 cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 378
           ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 458 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 406

>dbj|AK059006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-H05, full
            insert sequence
          Length = 1361

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 326  cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 378
            ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 1051 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 999

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 326      cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 378
                ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 26387648 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 26387700

>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146366

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 326   cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 378
             ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 82597 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 82545

>gb|AY029558.1| Zea mays putative methyl-binding domain protein MBD105 mRNA, complete
            cds
          Length = 1777

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 325  gcttcaggtgcacttcaccgtcgag 349
            |||||||||||||||||||||||||
Sbjct: 1434 gcttcaggtgcacttcaccgtcgag 1410

>gb|AY106371.1| Zea mays PCO124729 mRNA sequence
          Length = 872

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 325 gcttcaggtgcacttcaccgtcgag 349
           |||||||||||||||||||||||||
Sbjct: 500 gcttcaggtgcacttcaccgtcgag 476

>gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, complete sequence
          Length = 228513

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 431   ggcatctgatttggtttcagata 453
             |||||||||||||||||||||||
Sbjct: 16031 ggcatctgatttggtttcagata 16009

>dbj|AK138391.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230089I11 product:unclassifiable, full
            insert sequence
          Length = 1532

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 431  ggcatctgatttggtttcagata 453
            |||||||||||||||||||||||
Sbjct: 1105 ggcatctgatttggtttcagata 1083

>dbj|AK162519.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530052E02
           product:unclassifiable, full insert sequence
          Length = 950

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 431 ggcatctgatttggtttcagata 453
           |||||||||||||||||||||||
Sbjct: 528 ggcatctgatttggtttcagata 506

>gb|AC113484.14| Mus musculus chromosome 8, clone RP23-343H23, complete sequence
          Length = 176303

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 431    ggcatctgatttggtttcagata 453
              |||||||||||||||||||||||
Sbjct: 143171 ggcatctgatttggtttcagata 143149

>gb|AY029559.1| Zea mays putative methyl-binding domain protein MBD106 mRNA, complete
            cds
          Length = 1700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 430  cggcatctgatttggtttcag 450
            |||||||||||||||||||||
Sbjct: 1188 cggcatctgatttggtttcag 1168



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 430  cggcatctgatttggtttcag 450
            |||||||||||||||||||||
Sbjct: 1092 cggcatctgatttggtttcag 1072

>gb|BT019166.1| Zea mays clone Contig834.F mRNA sequence
          Length = 982

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 430 cggcatctgatttggtttcag 450
           |||||||||||||||||||||
Sbjct: 542 cggcatctgatttggtttcag 522



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 430 cggcatctgatttggtttcag 450
           |||||||||||||||||||||
Sbjct: 446 cggcatctgatttggtttcag 426



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 430 cggcatctgatttggtttcag 450
           |||||||||||||||||||||
Sbjct: 296 cggcatctgatttggtttcag 276

>gb|AC110883.12| Mus musculus chromosome 8, clone RP23-200N24, complete sequence
          Length = 293104

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 253    cagagactgattgattacaat 273
              |||||||||||||||||||||
Sbjct: 181754 cagagactgattgattacaat 181734

>gb|AY945713.1| HIV-1 isolate 01TH.C1436 from Thailand gag protein (gag) and pol
            protein (pol) genes, partial cds; vif protein (vif), vpr
            protein (vpr), tat protein (tat), rev protein (rev), vpu
            protein (vpu), and envelope glycoprotein (env) genes,
            complete cds; and nef protein (nef) gene, partial cds
          Length = 8389

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 54   tgatacacacagacaacggta 74
            |||||||||||||||||||||
Sbjct: 3751 tgatacacacagacaacggta 3771

>gb|AC121836.2| Mus musculus BAC clone RP24-73L11 from 8, complete sequence
          Length = 195192

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 253   cagagactgattgattacaat 273
             |||||||||||||||||||||
Sbjct: 83841 cagagactgattgattacaat 83821

>gb|AY351908.2| Hortaea acidophila laccase I gene, complete cds
          Length = 1998

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  ggcacggtgaccaacgccggc 167
            |||||||||||||||||||||
Sbjct: 1687 ggcacggtgaccaacgccggc 1707

>gb|AY103948.1| Zea mays PCO124731 mRNA sequence
          Length = 1792

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 430  cggcatctgatttggtttcag 450
            |||||||||||||||||||||
Sbjct: 1236 cggcatctgatttggtttcag 1216



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 430  cggcatctgatttggtttcag 450
            |||||||||||||||||||||
Sbjct: 1140 cggcatctgatttggtttcag 1120

>ref|XM_955728.1| Neurospora crassa OR74A hypothetical protein (NCU01284.1) partial
           mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 gcccgttgttgacggcggat 385
           ||||||||||||||||||||
Sbjct: 821 gcccgttgttgacggcggat 840

>ref|XM_326776.1| Neurospora crassa OR74A hypothetical protein (NCU01284.1) partial
           mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 gcccgttgttgacggcggat 385
           ||||||||||||||||||||
Sbjct: 821 gcccgttgttgacggcggat 840

>emb|AL445543.20| Human DNA sequence from clone RP11-4H20 on chromosome 9 Contains the 5'
             end of the gene for a novel protein (FLJ11985, MGC11337)
             (KIAA0870) and a CpG island, complete sequence
          Length = 140327

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   aggagggagggagctgcttc 329
             ||||||||||||||||||||
Sbjct: 14368 aggagggagggagctgcttc 14387

>emb|BX294016.1|NCB9K17 Neurospora crassa DNA linkage group V BAC clone B9K17
          Length = 71774

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gcccgttgttgacggcggat 385
             ||||||||||||||||||||
Sbjct: 12228 gcccgttgttgacggcggat 12247

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     tcgcgccgggcacggtgacc 158
               ||||||||||||||||||||
Sbjct: 3035222 tcgcgccgggcacggtgacc 3035203

>gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromosome ul, complete
             sequence
          Length = 225652

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   agtgtggggtacatgtatgt 139
             ||||||||||||||||||||
Sbjct: 86398 agtgtggggtacatgtatgt 86417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,653,049
Number of Sequences: 3902068
Number of extensions: 3653049
Number of successful extensions: 66739
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66592
Number of HSP's gapped (non-prelim): 147
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)