ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18i19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ243066.1|HVU243066 Hordeum vulgare partial RCCR gene for red chlorophyll catabolite reductase Length = 1013 Score = 644 bits (325), Expect = 0.0 Identities = 339/345 (98%) Strand = Plus / Minus Query: 17 catttgtacttctgaatcctaggcctcttgtaccccaaaggccttacgaatttcagcgat 76 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 908 catttgtacttctgaatcctagccctcttgtaccccaaaggccttacgaatttcagcgat 849 Query: 77 gatgcgtccggacacgtcggggccaaacatcctcggcaaattcgcggtcaggtcaacctc 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 848 gatgcgtccggacacgtcggggccaaacatcctcggcaaattcgcggtcaggtcaacctc 789 Query: 137 aatcgattttgatcttacagttcggtccctcttgaccatgatctctcgctcgccctcttc 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 788 aatcgattttgatcttacagttcggtccctcttgaccatgatctctcgctcgccctcttc 729 Query: 197 catttctgaggcgtcactgncgcaagtatcaagccagatctgaagaatccccttcacaac 256 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 728 catttctgaggcgtcactggcgcaagtatcaagccagatctgaagaatccccttcacaac 669 Query: 257 tgacgcaagatgaccatgcacaatctctttcaaggtgccctcccctcctttnccacagtc 316 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 668 tgacgcaagatgaccatgcacaatctcttccaaggtgccctcccctcctttcccacagtc 609 Query: 317 aatggtgaagaacaccgncgncggagaaaatgcgctgcgcacgaa 361 ||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 608 aatggtgaagaacaccgccgtcggagaaaatgcgctgcgcacgaa 564 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 180 tctcgctcgccctcttccatttctgaggcgt 210 ||||||||||||||||||||||||||||||| Sbjct: 31 tctcgctcgccctcttccatttctgaggcgt 1
>ref|NM_196273.1| Oryza sativa (japonica cultivar-group) putative red chlorophyll catabolite reductase (OSJNBb0061I18.21), mRNA Length = 771 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 ||||||||||||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 771 ctaggcctcttgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 712 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||| ||||| || || || || ||||| Sbjct: 711 gggaccaaacatcctcggcaaatttgaagtcaggtcgacctcgattgacttggaccttac 652 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 651 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 601
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 |||||||| |||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 141370 ctaggcctattgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 141311 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||||||||| || || || || ||||| Sbjct: 141310 gggaccaaacatcctcggcaaatttgaagtcaggtcaacctcgattgacttggaccttac 141251 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 141250 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 141200 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 ||||||||||||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 134296 ctaggcctcttgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 134237 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||| ||||| || || || || ||||| Sbjct: 134236 gggaccaaacatcctcggcaaatttgaagtcaggtcgacctcgattgacttggaccttac 134177 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 134176 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 134126
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 |||||||| |||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 161961 ctaggcctattgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 162020 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||||||||| || || || || ||||| Sbjct: 162021 gggaccaaacatcctcggcaaatttgaagtcaggtcaacctcgattgacttggaccttac 162080 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 162081 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 162131
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 ||||||||||||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 12369879 ctaggcctcttgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 12369938 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||| ||||| || || || || ||||| Sbjct: 12369939 gggaccaaacatcctcggcaaatttgaagtcaggtcgacctcgattgacttggaccttac 12369998 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 12369999 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 12370049 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 |||||||| |||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 12362805 ctaggcctattgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 12362864 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||||||||| || || || || ||||| Sbjct: 12362865 gggaccaaacatcctcggcaaatttgaagtcaggtcaacctcgattgacttggaccttac 12362924 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 12362925 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 12362975 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 30 gaatcctaggcctcttgtaccccaaaggccttacgaatttcagc 73 |||| ||||||||||||||| ||||||||||| || |||||||| Sbjct: 18522441 gaatgctaggcctcttgtactccaaaggccttccggatttcagc 18522398
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 ||||||||||||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 12377219 ctaggcctcttgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 12377278 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||| ||||| || || || || ||||| Sbjct: 12377279 gggaccaaacatcctcggcaaatttgaagtcaggtcgacctcgattgacttggaccttac 12377338 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 12377339 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 12377389 Score = 93.7 bits (47), Expect = 4e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 35 ctaggcctcttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtc 94 |||||||| |||||||||||||||||| | |||||||| |||| || | | || || Sbjct: 12370145 ctaggcctattgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatc 12370204 Query: 95 ggggccaaacatcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttac 154 ||| |||||||||||||||||||| | |||||||||||||| || || || || ||||| Sbjct: 12370205 gggaccaaacatcctcggcaaatttgaagtcaggtcaacctcgattgacttggaccttac 12370264 Query: 155 agttcggtccctcttgaccatgatctctcgctcgccctcttccatttctga 205 | || |||||||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 12370265 aatttggtccctctttatcatgttttctctctcgccttcttccatctctga 12370315 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 30 gaatcctaggcctcttgtaccccaaaggccttacgaatttcagc 73 |||| ||||||||||||||| ||||||||||| || |||||||| Sbjct: 18532494 gaatgctaggcctcttgtactccaaaggccttccggatttcagc 18532451
>ref|NM_196272.1| Oryza sativa (japonica cultivar-group) Red chlorophyll catabolite reductase (OSJNBa0094J09.24), mRNA Length = 1119 Score = 83.8 bits (42), Expect = 4e-13 Identities = 132/162 (81%) Strand = Plus / Minus Query: 44 ttgtaccccaaaggccttacgaatttcagcgatgatgcgtccggacacgtcggggccaaa 103 |||||||||||||||||| | |||||||| |||| || | | || ||||| ||||| Sbjct: 1116 ttgtaccccaaaggccttctggatttcagctatgactcggtctgcgacatcgggaccaaa 1057 Query: 104 catcctcggcaaattcgcggtcaggtcaacctcaatcgattttgatcttacagttcggtc 163 ||||||||||||||| | |||||||||||||| || || || || |||||| || |||| Sbjct: 1056 catcctcggcaaatttgaagtcaggtcaacctcgattgacttggaccttacaatttggtc 997 Query: 164 cctcttgaccatgatctctcgctcgccctcttccatttctga 205 |||||| | |||| | |||| |||||| |||||||| ||||| Sbjct: 996 cctctttatcatgttttctctctcgccttcttccatctctga 955
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 30 gaatcctaggcctcttgtaccccaaaggccttacgaatttcagc 73 |||| ||||||||||||||| ||||||||||| || |||||||| Sbjct: 25452 gaatgctaggcctcttgtactccaaaggccttccggatttcagc 25409
>gb|AC023449.11| Homo sapiens chromosome 15, clone RP11-345J18, complete sequence Length = 175336 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 gcctcttgtaccccaaaggcct 60 |||||||||||||||||||||| Sbjct: 51881 gcctcttgtaccccaaaggcct 51860
>dbj|AK091793.1| Homo sapiens cDNA FLJ34474 fis, clone HLUNG2003714 Length = 2069 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 gcctcttgtaccccaaaggcct 60 |||||||||||||||||||||| Sbjct: 143 gcctcttgtaccccaaaggcct 122
>gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, complete sequence Length = 189975 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 gcctcttgtaccccaaaggcct 60 |||||||||||||||||||||| Sbjct: 128258 gcctcttgtaccccaaaggcct 128237
>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence Length = 208499 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 gcaagtatcaagccagatctg 238 ||||||||||||||||||||| Sbjct: 184217 gcaagtatcaagccagatctg 184237
>gb|AC100153.10| Mus musculus chromosome 7, clone RP23-43N3, complete sequence Length = 132518 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 gcaagtatcaagccagatctg 238 ||||||||||||||||||||| Sbjct: 108820 gcaagtatcaagccagatctg 108800 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,297,968 Number of Sequences: 3902068 Number of extensions: 2297968 Number of successful extensions: 36886 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36822 Number of HSP's gapped (non-prelim): 64 length of query: 363 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 341 effective length of database: 17,147,199,772 effective search space: 5847195122252 effective search space used: 5847195122252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
