ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18i08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111313.1| Zea mays CL35554_1 mRNA sequence 72 2e-09
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
3dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
4dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
5gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, comp... 44 0.55
6gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, com... 44 0.55
7ref|XM_483057.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
8gb|AC117677.9| Mus musculus chromosome 7, clone RP23-421G2, comp... 42 2.2
9ref|XM_817439.1| Trypanosoma brucei TREU927 hypothetical protein... 42 2.2
10emb|AL358612.9| Human DNA sequence from clone RP11-435M3 on chro... 42 2.2
11emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 ... 42 2.2
12gb|AC164000.2| Mus musculus chromosome 7, clone RP23-157G7, comp... 42 2.2
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
14gb|AC154517.2| Mus musculus BAC clone RP24-85L11 from chromosome... 42 2.2
15dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17ref|XM_313095.2| Anopheles gambiae str. PEST ENSANGP00000012870 ... 42 2.2
18dbj|AK110869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
19dbj|AK103460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
20emb|AL591374.5| Zebrafish DNA sequence from clone BUSM1-204B6 in... 42 2.2
21emb|AL591462.5| Zebrafish DNA sequence from clone BUSM1-204D19 i... 42 2.2
22emb|BX293986.7| Mouse DNA sequence from clone RP24-492P10 on chr... 42 2.2
23emb|BX294368.7| Zebrafish DNA sequence from clone CH211-244N12 i... 42 2.2
24gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 8.7
25ref|XM_458866.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 8.7
26gb|AC161236.6| Mus musculus chromosome 3, clone RP23-403O4, comp... 40 8.7
27emb|CR293531.11| Zebrafish DNA sequence from clone DKEY-125H23 i... 40 8.7
28gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.7
29emb|AL157713.10| Human DNA sequence from clone RP11-110J1 on chr... 40 8.7
30emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 8.7
31emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 8.7
32gb|AC123901.2| Homo sapiens chromosome 3 clone RP11-952G4, compl... 40 8.7
33gb|AC009509.7| Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Ro... 40 8.7
34gb|AC010974.9| Homo sapiens BAC clone RP11-159N20 from 2, comple... 40 8.7
35gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cance... 40 8.7
36dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 8.7
37gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 8.7
38dbj|AP001827.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.7
39dbj|AP003110.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.7
40emb|BX005364.9| Zebrafish DNA sequence from clone DKEY-222L20, c... 40 8.7 
>gb|AY111313.1| Zea mays CL35554_1 mRNA sequence
          Length = 608

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 292 gttcttggcagaggaatctgctgctgaagatggagaatccctcctctcatggttgttctt 351
           ||||||||||||| ||||||||||||||||||||||||  | | |||||||| |||||||
Sbjct: 307 gttcttggcagagaaatctgctgctgaagatggagaatttcccttctcatggctgttctt 366
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                            
Query: 292      gttcttggcagaggaatctgctgctgaagatggagaatccctcctctcatggttgttctt 351
                ||||||||||| ||| |||||||   | ||||||||||| |||||||||||| |||||||
Sbjct: 18066129 gttcttggcagcggagtctgctgtcaaggatggagaatcactcctctcatggctgttctt 18066070

                                                                   
Query: 352      ctctcggagaaaattcacagggttcgcatacgaacttgtgcatggccacct 402
                 ||||| | |||||| || ||||  ||| | || ||||| |||||||||||
Sbjct: 18066069 atctcgaaaaaaatttactgggtctgcaaatgatcttgtacatggccacct 18066019



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                            
Query: 468      ccttattagagaagtatttggccttgatgcgtgctgcaagttcagcttggtatctgttta 527
                ||||||||||||||||||||||||| |  || |||||||||  |||||| ||| ||||||
Sbjct: 18058799 ccttattagagaagtatttggccttcaaacgggctgcaagtatagcttgatatttgttta 18058740

                          
Query: 528      ccttctgttc 537
                 |||||||||
Sbjct: 18058739 tcttctgttc 18058730
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>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0026C08
          Length = 155316

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                         
Query: 292   gttcttggcagaggaatctgctgctgaagatggagaatccctcctctcatggttgttctt 351
             ||||||||||| ||| |||||||   | ||||||||||| |||||||||||| |||||||
Sbjct: 59251 gttcttggcagcggagtctgctgtcaaggatggagaatcactcctctcatggctgttctt 59192

                                                                
Query: 352   ctctcggagaaaattcacagggttcgcatacgaacttgtgcatggccacct 402
              ||||| | |||||| || ||||  ||| | || ||||| |||||||||||
Sbjct: 59191 atctcgaaaaaaatttactgggtctgcaaatgatcttgtacatggccacct 59141



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 468   ccttattagagaagtatttggccttgatgcgtgctgcaagttcagcttggtatctgttta 527
             ||||||||||||||||||||||||| |  || |||||||||  |||||| ||| ||||||
Sbjct: 51921 ccttattagagaagtatttggccttcaaacgggctgcaagtatagcttgatatttgttta 51862

                       
Query: 528   ccttctgttc 537
              |||||||||
Sbjct: 51861 tcttctgttc 51852
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>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1509_C06
          Length = 113436

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                          
Query: 468    ccttattagagaagtatttggccttgatgcgtgctgcaagttcagcttggtatctgttta 527
              ||||||||||||||||||||||||| |  || |||||||||  |||||| ||| ||||||
Sbjct: 110453 ccttattagagaagtatttggccttcaaacgggctgcaagtatagcttgatatttgttta 110394

                        
Query: 528    ccttctgttc 537
               |||||||||
Sbjct: 110393 tcttctgttc 110384
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>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence
          Length = 175313

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 215  ggtgttagattgttttctgttg 236
            ||||||||||||||||||||||
Sbjct: 3471 ggtgttagattgttttctgttg 3450
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>gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, complete sequence
          Length = 205237

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 215   ggtgttagattgttttctgttg 236
             ||||||||||||||||||||||
Sbjct: 85262 ggtgttagattgttttctgttg 85241
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>ref|XM_483057.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 479 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 538
           |||||||||||||| |  || ||||||||  |||| || ||| |||| ||||||| ||||
Sbjct: 265 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 206

                
Query: 539 tgctc 543
           |||||
Sbjct: 205 tgctc 201
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>gb|AC117677.9| Mus musculus chromosome 7, clone RP23-421G2, complete sequence
          Length = 249789

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 90     ggacggatttttatttcatga 110
              |||||||||||||||||||||
Sbjct: 120871 ggacggatttttatttcatga 120851
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>ref|XM_817439.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.4860)
            partial mRNA
          Length = 3207

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 344  ttgttcttctctcggagaaaattca 368
            ||||||| |||||||||||||||||
Sbjct: 1022 ttgttctcctctcggagaaaattca 998
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>emb|AL358612.9| Human DNA sequence from clone RP11-435M3 on chromosome 10 Contains the
             5' end of the MYO3A gene for myosin IIIA, a novel gene and
             a CpG island, complete sequence
          Length = 174021

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 435   ttacttcttcaaagatttttc 455
             |||||||||||||||||||||
Sbjct: 79425 ttacttcttcaaagatttttc 79445
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>emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 in linkage group 6,
             complete sequence
          Length = 162560

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   ataacttgcatacttcaggtt 130
             |||||||||||||||||||||
Sbjct: 30906 ataacttgcatacttcaggtt 30886
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>gb|AC164000.2| Mus musculus chromosome 7, clone RP23-157G7, complete sequence
          Length = 206022

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    ggacggatttttatttcatga 110
             |||||||||||||||||||||
Sbjct: 49223 ggacggatttttatttcatga 49243
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                            
Query: 479      aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 538
                |||||||||||||| |  || ||||||||  |||| || ||| |||| ||||||| ||||
Sbjct: 24073841 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 24073782

                     
Query: 539      tgctc 543
                |||||
Sbjct: 24073781 tgctc 24073777
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>gb|AC154517.2| Mus musculus BAC clone RP24-85L11 from chromosome 12, complete sequence
          Length = 167631

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 266    gcttcagctaccacagatgaa 286
              |||||||||||||||||||||
Sbjct: 106229 gcttcagctaccacagatgaa 106249
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>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0481F05
          Length = 139739

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                          
Query: 479    aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 538
              |||||||||||||| |  || ||||||||  |||| || ||| |||| ||||||| ||||
Sbjct: 101241 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 101182

                   
Query: 539    tgctc 543
              |||||
Sbjct: 101181 tgctc 101177
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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 479   aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 538
             |||||||||||||| |  || ||||||||  |||| || ||| |||| ||||||| ||||
Sbjct: 27327 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 27268

                  
Query: 539   tgctc 543
             |||||
Sbjct: 27267 tgctc 27263
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>ref|XM_313095.2| Anopheles gambiae str. PEST ENSANGP00000012870
           (ENSANGG00000010381), partial mRNA
          Length = 1767

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 121 acttcaggttgttgcacgtcttcag 145
           |||||||||| ||||||||||||||
Sbjct: 811 acttcaggttcttgcacgtcttcag 787
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>dbj|AK110869.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E04, full
           insert sequence
          Length = 2144

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 479 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 538
           |||||||||||||| |  || ||||||||  |||| || ||| |||| ||||||| ||||
Sbjct: 318 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 259

                
Query: 539 tgctc 543
           |||||
Sbjct: 258 tgctc 254
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>dbj|AK103460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129L23, full
           insert sequence
          Length = 780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 479 aagtatttggccttgatgcgtgctgcaagttcagcttggtatctgtttaccttctgttca 538
           |||||||||||||| |  || ||||||||  |||| || ||| |||| ||||||| ||||
Sbjct: 265 aagtatttggccttcaaacgagctgcaaggacagcctgatatttgttgaccttctcttca 206

                
Query: 539 tgctc 543
           |||||
Sbjct: 205 tgctc 201
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>emb|AL591374.5| Zebrafish DNA sequence from clone BUSM1-204B6 in linkage group 6,
             complete sequence
          Length = 102137

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   ataacttgcatacttcaggtt 130
             |||||||||||||||||||||
Sbjct: 46935 ataacttgcatacttcaggtt 46915
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>emb|AL591462.5| Zebrafish DNA sequence from clone BUSM1-204D19 in linkage group 6,
             complete sequence
          Length = 77242

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   ataacttgcatacttcaggtt 130
             |||||||||||||||||||||
Sbjct: 51645 ataacttgcatacttcaggtt 51665
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>emb|BX293986.7| Mouse DNA sequence from clone RP24-492P10 on chromosome X, complete
              sequence
          Length = 114458

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    acttgcatacttcaggttgtt 133
              |||||||||||||||||||||
Sbjct: 108622 acttgcatacttcaggttgtt 108642
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>emb|BX294368.7| Zebrafish DNA sequence from clone CH211-244N12 in linkage group 6,
              complete sequence
          Length = 147484

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    ataacttgcatacttcaggtt 130
              |||||||||||||||||||||
Sbjct: 132193 ataacttgcatacttcaggtt 132213
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    atctgctgctgaagatggag 326
              ||||||||||||||||||||
Sbjct: 749472 atctgctgctgaagatggag 749491
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>ref|XM_458866.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D10175g)
           partial mRNA
          Length = 2034

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 ttagattgttttctgttgcc 238
           ||||||||||||||||||||
Sbjct: 409 ttagattgttttctgttgcc 390
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>gb|AC161236.6| Mus musculus chromosome 3, clone RP23-403O4, complete sequence
          Length = 206652

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tcaacaatagttacttcttc 444
             ||||||||||||||||||||
Sbjct: 73528 tcaacaatagttacttcttc 73547
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>emb|CR293531.11| Zebrafish DNA sequence from clone DKEY-125H23 in linkage group 21,
             complete sequence
          Length = 116173

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 517   gtatctgtttaccttctgttcatg 540
             |||||| |||||||||||||||||
Sbjct: 79772 gtatctatttaccttctgttcatg 79795
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 587     tcggacttgacggtgagcat 606
               ||||||||||||||||||||
Sbjct: 4694557 tcggacttgacggtgagcat 4694576
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>emb|AL157713.10| Human DNA sequence from clone RP11-110J1 on chromosome 1q23.3-24.3
             Contains the ETV3 gene for ets variant gene 3, a
             cytochrome c somatic pseudogene (HCP2), a ets variant gene
             3 (ETV3) pseudogene, a keratin 8 (KRT8) pseudogene, a
             smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
             (SMU1) pseudogene, the 5' end of the ARHGEF11 gene for Rho
             guanine nucleotide exchange factor (GEF) 11 and two CPG
             islands, complete sequence
          Length = 167292

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   ttcttggcagaggaatctgc 312
             ||||||||||||||||||||
Sbjct: 69571 ttcttggcagaggaatctgc 69590
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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
              hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    ttagattgttttctgttgcc 238
              ||||||||||||||||||||
Sbjct: 979415 ttagattgttttctgttgcc 979434



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    ttagattgttttctgttgcc 238
              ||||||||||||||||||||
Sbjct: 748641 ttagattgttttctgttgcc 748660
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>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              2/17
          Length = 349287

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 587    tcggacttgacggtgagcat 606
              ||||||||||||||||||||
Sbjct: 118893 tcggacttgacggtgagcat 118874
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>gb|AC123901.2| Homo sapiens chromosome 3 clone RP11-952G4, complete sequence
          Length = 217409

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    tttttatttcatgataactt 116
             ||||||||||||||||||||
Sbjct: 75776 tttttatttcatgataactt 75795
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>gb|AC009509.7| Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 192690

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 469   cttattagagaagtatttggcctt 492
             |||||||||||||| |||||||||
Sbjct: 45223 cttattagagaagtctttggcctt 45246
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>gb|AC010974.9| Homo sapiens BAC clone RP11-159N20 from 2, complete sequence
          Length = 147131

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 430   aatagttacttcttcaaagatttttcct 457
             ||||||||||||| |||||||| |||||
Sbjct: 61994 aatagttacttctacaaagattcttcct 62021
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>gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 157653

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   cttgcatacttcaggttgtt 133
             ||||||||||||||||||||
Sbjct: 62141 cttgcatacttcaggttgtt 62160
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 305     gaatctgctgctgaagatggagaa 328
               |||||||| |||||||||||||||
Sbjct: 5408254 gaatctgccgctgaagatggagaa 5408231
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 413     atggtttctccttcaacaat 432
               ||||||||||||||||||||
Sbjct: 1961130 atggtttctccttcaacaat 1961149
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>dbj|AP001827.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-236L10, complete
              sequence
          Length = 167639

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    acttcttcaaagatttttcc 456
              ||||||||||||||||||||
Sbjct: 128273 acttcttcaaagatttttcc 128292
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>dbj|AP003110.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-843A23, complete
             sequence
          Length = 142000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   gtgttagattgttttctgtt 235
             ||||||||||||||||||||
Sbjct: 96387 gtgttagattgttttctgtt 96406
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>emb|BX005364.9| Zebrafish DNA sequence from clone DKEY-222L20, complete sequence
          Length = 156035

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 517   gtatctgtttaccttctgtt 536
             ||||||||||||||||||||
Sbjct: 83163 gtatctgtttaccttctgtt 83144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,791,239
Number of Sequences: 3902068
Number of extensions: 5791239
Number of successful extensions: 101255
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 101056
Number of HSP's gapped (non-prelim): 200
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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