ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18h15 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ Y RS+MSG +QT FFGY Y FFLMLG + F ++L F+R+IY ++K + Sbjct: 549 YSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ Y RS+MSG +QT FFGY Y FFLMLG + F ++L F+R+IY ++K + Sbjct: 549 YSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ Y RS+MSG +QT FFGY Y FFLMLG + F ++L F+R+IY ++K + Sbjct: 549 YSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ Y RS+MSG +QT FFGY Y FFLMLG + F ++L F+R+IY ++K + Sbjct: 532 YSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 56.6 bits (135), Expect = 5e-08 Identities = 25/60 (41%), Positives = 35/60 (58%) Frame = -2 Query: 559 YGYCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y Y Y Y+ ++ M G QTSF+FGYMA A +M G +G+ FVR IY ++K + Sbjct: 530 YMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 56.6 bits (135), Expect = 5e-08 Identities = 25/60 (41%), Positives = 35/60 (58%) Frame = -2 Query: 559 YGYCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y Y Y Y+ ++ M G QTSF+FGYMA A +M G +G+ FVR IY ++K + Sbjct: 528 YMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 48.5 bits (114), Expect = 1e-05 Identities = 20/58 (34%), Positives = 36/58 (62%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ + + D+ F+ + +FGY A + +F+L+ G +GF AA FVR IY ++K + Sbjct: 568 YAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 625
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ ++++ ++G T +FGY + FFL G +GF A +FV IY +K + Sbjct: 605 YAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ ++++ ++G T +FGY + FFL G +GF A +FV IY +K + Sbjct: 606 YAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 44.7 bits (104), Expect = 2e-04 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ ++++ ++G T +FGY + FFL G +GF A +FV IY +K + Sbjct: 606 YAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 44.7 bits (104), Expect = 2e-04 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 553 YCLYXYYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKSIKCE 380 Y ++ ++++ ++G T +FGY + FFL G +GF A +FV IY +K + Sbjct: 606 YAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 38.1 bits (87), Expect = 0.017 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = -2 Query: 556 GYCLYXY-----YARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFVRHIYKS 392 G LY + + + + GF + GY + I L+ G +GF +++ FVR IY S Sbjct: 604 GCALYVFIHSILFTKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSMLFVRKIYSS 663 Query: 391 IKCE 380 IK + Sbjct: 664 IKVD 667
>PDR2_NICPL (Q2PCF1) Pleiotropic drug resistance protein 2 (NpPDR2)| Length = 1461 Score = 25.4 bits (54), Expect(2) = 5.5 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -2 Query: 520 MSGFMQTS---FFFGYMACICYAFFLMLGMV 437 M G+ T+ F+F Y +C+ +F M GM+ Sbjct: 1308 MIGYQWTAVKFFYFYYFIFMCFTYFSMYGMM 1338 Score = 22.7 bits (47), Expect(2) = 5.5 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = -3 Query: 447 WVWWASVPPCSLFGTYTSR--SSVSKVLLEDEEQQAELYSFL 328 W +WAS +++G + S+ ++ L E ++ ++ FL Sbjct: 1379 WYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFL 1420
>NU4M_MARPO (P26848) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 495 Score = 29.6 bits (65), Expect = 6.1 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 238 GLISNMPISSSCFLLHARANLFYTGTS 318 GL+S MPI S+ FL AN+ GTS Sbjct: 369 GLVSTMPIFSTIFLFFTLANMSLPGTS 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,466,033 Number of Sequences: 219361 Number of extensions: 1712049 Number of successful extensions: 4135 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4023 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4134 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
