ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 ... 30 1.6
2STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty... 30 1.6
3SRK3_SPOLA (P42689) Tyrosine-protein kinase SRK3 (EC 2.7.10.2) (... 28 4.5
4ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disint... 28 7.8
5ATG4_YARLI (Q6CH28) Probable cysteine protease ATG4 (EC 3.4.22.-... 28 7.8

>YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 1183

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +3

Query: 33  SXQGHAAKQNIXSSTHLKDHNGTTAAHNIVHNRPNRPCHEAIKIRSPGTLSLSIDRCYNI 212
           S   H+++ ++ SS+        + + N     P  PCHE  K+ S G+   S D     
Sbjct: 135 SISTHSSRSSLRSSS--------SRSLNAQEQAPKHPCHELRKLLSNGSFYYSTDFDLTC 186

Query: 213 XLDSAFKQGFSSH 251
            L    K+GF+ H
Sbjct: 187 TLQ---KRGFTEH 196



to top

>STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty acid synthase|
            beta subunit
          Length = 1914

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -3

Query: 209  VVAPVDREREGSWTPDFDRLMA---RSIWSIMHYVMSSCCPIV---ILQMCTGXYVL 57
            ++   +R R  SW P FD L+    R    I H+ M+  C +V   +L+  TG  V+
Sbjct: 1479 IIGDNERTRFCSWAPSFDGLVRANDRLRMEIQHFAMADGCMVVHVRVLKESTGEQVM 1535



to top

>SRK3_SPOLA (P42689) Tyrosine-protein kinase SRK3 (EC 2.7.10.2) (Fragment)|
          Length = 334

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
 Frame = +3

Query: 129 RPNRPCHEAIKIRSPGTLSLS------IDRCYNIXLDSAFKQGFSSHVWKTQWGGLTXVA 290
           R +RPC  A     P T  LS      IDR   I L     QG    VW   W G T VA
Sbjct: 37  RLSRPCSRA---NIPITSGLSYKDEWEIDRT-TIQLQRKLGQGNFGEVWAGVWNGTTAVA 92

Query: 291 V 293
           V
Sbjct: 93  V 93



to top

>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 12)
           (ADAM-TS 12) (ADAM-TS12)
          Length = 1593

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 278 EPSPLGLPDMR*EPLFEGAVEANVVAPVDREREG 177
           +P P+  PD R E   +G  E +VV PV  +  G
Sbjct: 31  QPGPVRFPDRRQEHFIKGLPEYHVVGPVRVDASG 64



to top

>ATG4_YARLI (Q6CH28) Probable cysteine protease ATG4 (EC 3.4.22.-)|
           (Autophagy-related protein 4)
          Length = 545

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 218 EANVVAPVDREREGSWTPDFDRLMARSIW 132
           E  +V P+D   + SW PDF   +   IW
Sbjct: 46  EDGIVVPLDTSNDTSWPPDFLADVQSRIW 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,246,378
Number of Sequences: 219361
Number of extensions: 731031
Number of successful extensions: 1716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top