ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009299.1| Triticum aestivum clone wlm1.pk0008.c11:fis, full... 105 8e-20
2emb|BX469920.6| Zebrafish DNA sequence from clone DKEY-237J21 in... 42 0.99
3emb|BX842683.9| Zebrafish DNA sequence from clone DKEYP-118H3 in... 40 3.9
4emb|AL138639.1|ATT21C14 Arabidopsis thaliana DNA chromosome 3, B... 40 3.9

>gb|BT009299.1| Triticum aestivum clone wlm1.pk0008.c11:fis, full insert mRNA
            sequence
          Length = 1344

 Score =  105 bits (53), Expect = 8e-20
 Identities = 86/97 (88%), Gaps = 3/97 (3%)
 Strand = Plus / Minus

                                                                        
Query: 192  atcgacaggtgctacaacattngcctcgacagcgccttcaaacaggggttctcatctcat 251
            ||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||   |
Sbjct: 1024 atcgacaggtgctacaacattagccttgacagtgccttcaaacaggggttctcatc---t 968

                                                 
Query: 252  gtctggaagacccaatggggagggctcactgntgtgg 288
            ||||||| ||||||| | |||| |||||||| |||||
Sbjct: 967  gtctggacgacccaacgaggagagctcactgttgtgg 931



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/86 (89%), Gaps = 4/86 (4%)
 Strand = Plus / Minus

                                                                        
Query: 97   ggacaacagctgctcataacatagtgcataata---gaccaaatagaccttgccatgagg 153
            |||||||||||| ||||||||||||||||||||   || ||| |||||||||||||| ||
Sbjct: 1119 ggacaacagctgatcataacatagtgcataataacagaacaa-tagaccttgccatgggg 1061

                                      
Query: 154  cgatcaaaatcaggagtccaggaacc 179
            | ||||||||| ||||||||||||||
Sbjct: 1060 caatcaaaatccggagtccaggaacc 1035



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>emb|BX469920.6| Zebrafish DNA sequence from clone DKEY-237J21 in linkage group 24,
             complete sequence
          Length = 123617

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 232   aacaggggttctcatctcatg 252
             |||||||||||||||||||||
Sbjct: 17791 aacaggggttctcatctcatg 17811



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>emb|BX842683.9| Zebrafish DNA sequence from clone DKEYP-118H3 in linkage group 9,
              complete sequence
          Length = 160823

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 53     aaaacaaaacatagnttccagta 75
              |||||||||||||| ||||||||
Sbjct: 156933 aaaacaaaacataggttccagta 156911



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>emb|AL138639.1|ATT21C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T21C14
          Length = 79677

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ctcataacatagtgcataat 128
             ||||||||||||||||||||
Sbjct: 31220 ctcataacatagtgcataat 31201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,562,707
Number of Sequences: 3902068
Number of extensions: 2562707
Number of successful extensions: 36839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36832
Number of HSP's gapped (non-prelim): 7
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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