| Clone Name | rbags18h14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | gb|BT009299.1| Triticum aestivum clone wlm1.pk0008.c11:fis, full... | 105 | 8e-20 | 2 | emb|BX469920.6| Zebrafish DNA sequence from clone DKEY-237J21 in... | 42 | 0.99 | 3 | emb|BX842683.9| Zebrafish DNA sequence from clone DKEYP-118H3 in... | 40 | 3.9 | 4 | emb|AL138639.1|ATT21C14 Arabidopsis thaliana DNA chromosome 3, B... | 40 | 3.9 |
|---|
>gb|BT009299.1| Triticum aestivum clone wlm1.pk0008.c11:fis, full insert mRNA sequence Length = 1344 Score = 105 bits (53), Expect = 8e-20 Identities = 86/97 (88%), Gaps = 3/97 (3%) Strand = Plus / Minus Query: 192 atcgacaggtgctacaacattngcctcgacagcgccttcaaacaggggttctcatctcat 251 ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| | Sbjct: 1024 atcgacaggtgctacaacattagccttgacagtgccttcaaacaggggttctcatc---t 968 Query: 252 gtctggaagacccaatggggagggctcactgntgtgg 288 ||||||| ||||||| | |||| |||||||| ||||| Sbjct: 967 gtctggacgacccaacgaggagagctcactgttgtgg 931 Score = 87.7 bits (44), Expect = 2e-14 Identities = 77/86 (89%), Gaps = 4/86 (4%) Strand = Plus / Minus Query: 97 ggacaacagctgctcataacatagtgcataata---gaccaaatagaccttgccatgagg 153 |||||||||||| |||||||||||||||||||| || ||| |||||||||||||| || Sbjct: 1119 ggacaacagctgatcataacatagtgcataataacagaacaa-tagaccttgccatgggg 1061 Query: 154 cgatcaaaatcaggagtccaggaacc 179 | ||||||||| |||||||||||||| Sbjct: 1060 caatcaaaatccggagtccaggaacc 1035
>emb|BX469920.6| Zebrafish DNA sequence from clone DKEY-237J21 in linkage group 24, complete sequence Length = 123617 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 aacaggggttctcatctcatg 252 ||||||||||||||||||||| Sbjct: 17791 aacaggggttctcatctcatg 17811
>emb|BX842683.9| Zebrafish DNA sequence from clone DKEYP-118H3 in linkage group 9, complete sequence Length = 160823 Score = 40.1 bits (20), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 53 aaaacaaaacatagnttccagta 75 |||||||||||||| |||||||| Sbjct: 156933 aaaacaaaacataggttccagta 156911
>emb|AL138639.1|ATT21C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T21C14 Length = 79677 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ctcataacatagtgcataat 128 |||||||||||||||||||| Sbjct: 31220 ctcataacatagtgcataat 31201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,562,707 Number of Sequences: 3902068 Number of extensions: 2562707 Number of successful extensions: 36839 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36832 Number of HSP's gapped (non-prelim): 7 length of query: 298 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 276 effective length of database: 17,147,199,772 effective search space: 4732627137072 effective search space used: 4732627137072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)