ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18h13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CR1_HUMAN (P17927) Complement receptor type 1 precursor (C3b/C4b... 29 3.2
2KPRS_SYNPX (Q7U7L5) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 3.2
3K1849_HUMAN (Q96JH8) Protein KIAA1849 28 4.1
4MY18A_HUMAN (Q92614) Myosin-18A (Myosin XVIIIa) (Myosin containi... 28 5.4
5ZN507_HUMAN (Q8TCN5) Zinc finger protein 507 28 5.4
6KPRS_PROMM (Q7V6S2) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 28 5.4
7YL041_MIMIV (Q5UPC0) Hypothetical protein L41 28 7.0
8CH601_MYCTU (P0A518) 60 kDa chaperonin 1 (Protein Cpn60-1) (groE... 27 9.2
9CH601_MYCBO (P0A519) 60 kDa chaperonin 1 (Protein Cpn60-1) (groE... 27 9.2
10CHST7_MOUSE (Q9EP78) Carbohydrate sulfotransferase 7 (EC 2.8.2.1... 27 9.2
11CHST7_HUMAN (Q9NS84) Carbohydrate sulfotransferase 7 (EC 2.8.2.1... 27 9.2

>CR1_HUMAN (P17927) Complement receptor type 1 precursor (C3b/C4b receptor)|
            (CD35 antigen)
          Length = 2039

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
 Frame = -1

Query: 232  KHPHLAHCCLPMPSLWRNEHP---QDQLKKSMSISSPC----DWPVRTSLHCT 95
            K PH +  C P P +   EH    QD       +   C    D     SLHCT
Sbjct: 1642 KLPHCSRVCQPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCT 1694



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>KPRS_SYNPX (Q7U7L5) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 331

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 41  RRLILQSTTRNPRLQQQISAMQ*RPDGPITRRRDAHALLQLVLR 172
           RRL L S T NP L ++I+A    PDGP   +R A   L + ++
Sbjct: 20  RRLRLFSGTSNPGLAREIAAYLGVPDGPRVCKRFADGELYVQIQ 63



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>K1849_HUMAN (Q96JH8) Protein KIAA1849|
          Length = 1073

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
 Frame = -1

Query: 295 LTAAR*ASEAGGPQFLRLLFYKHPHL-----------AHCCLPMPSLWRNEHPQDQLKKS 149
           L AA    E  GP  +R   Y+ PHL             C  P P+      P    K S
Sbjct: 226 LPAAAQGPEEPGPNAMRYSLYQSPHLLLLQGYSQQHPGVCAQPGPAHGGPADPSS--KPS 283

Query: 148 MSISSPCDWPVRTSLHCT 95
           +S+S+P   P    LHCT
Sbjct: 284 ISLSAPDILP----LHCT 297



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>MY18A_HUMAN (Q92614) Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain)|
            (Molecule associated with JAK3 N-terminus) (MAJN)
          Length = 2054

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 223  HLAHCCLPMPSLWRNEHPQDQLKKSMSISSPCDWPVRTSLHCTYLLL 83
            H  HC LP+   W  E P+    + +S SS  D P  +  HC   LL
Sbjct: 1042 HFVHCFLPVAEGWAGE-PRSASSRRVSSSSELDLP--SGDHCEAGLL 1085



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>ZN507_HUMAN (Q8TCN5) Zinc finger protein 507|
          Length = 849

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 120 PSGRHCIALICCCSLGF 70
           PS  +C+ L CCC  GF
Sbjct: 798 PSMEYCVLLFCCCICGF 814



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>KPRS_PROMM (Q7V6S2) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 332

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 5   AVQXHXESNKKD-RRLILQSTTRNPRLQQQISAMQ*RPDGPITRRRDAHALLQLVLR 172
           A +   ES   D +RL L S T NP L ++I+A    PDGP   +R A   L + ++
Sbjct: 7   AARTEQESISYDMQRLRLFSGTSNPALAREIAAYLGVPDGPRICKRFADGELYVQIQ 63



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>YL041_MIMIV (Q5UPC0) Hypothetical protein L41|
          Length = 478

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 26  SNKKDRRLILQSTTRNPRLQQQISAMQ*RPDGPITRRRDAHALLQLVLR 172
           S++K  RL L+  +R+P  ++  S ++ R   P+  R   H   +L+LR
Sbjct: 161 SSRKRSRLPLRERSRSPSRERSRSPLRERYRSPLRERSRLHLREKLILR 209



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>CH601_MYCTU (P0A518) 60 kDa chaperonin 1 (Protein Cpn60-1) (groEL protein 1)|
          Length = 539

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 157 SVGPAGVHCAIERALGDSSELNAGVCKKANVKIED 261
           ++GP G H  + +A G  +  N GV     +++ED
Sbjct: 29  TLGPRGRHVVLAKAFGGPTVTNDGVTVAREIELED 63



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>CH601_MYCBO (P0A519) 60 kDa chaperonin 1 (Protein Cpn60-1) (groEL protein 1)|
          Length = 539

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 157 SVGPAGVHCAIERALGDSSELNAGVCKKANVKIED 261
           ++GP G H  + +A G  +  N GV     +++ED
Sbjct: 29  TLGPRGRHVVLAKAFGGPTVTNDGVTVAREIELED 63



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>CHST7_MOUSE (Q9EP78) Carbohydrate sulfotransferase 7 (EC 2.8.2.17) (EC 2.8.2.-)|
           (Chondroitin 6-sulfotransferase 2) (C6ST-2) (mC6ST-2)
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-4)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfot
          Length = 484

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 262 GPQFLRLLFYKHPHLAHCCLPMPSLWRNEHPQD 164
           G  FL  LF +HP + +   PM  LW+  +P D
Sbjct: 111 GSSFLGELFNQHPDVFYLYEPMWHLWQALYPGD 143



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>CHST7_HUMAN (Q9NS84) Carbohydrate sulfotransferase 7 (EC 2.8.2.17) (EC 2.8.2.-)|
           (Chondroitin 6-sulfotransferase 2) (C6ST-2)
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-4)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfotransferase
          Length = 486

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 262 GPQFLRLLFYKHPHLAHCCLPMPSLWRNEHPQD 164
           G  FL  LF +HP + +   PM  LW+  +P D
Sbjct: 113 GSSFLGELFNQHPDVFYLYEPMWHLWQALYPGD 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,781,348
Number of Sequences: 219361
Number of extensions: 809553
Number of successful extensions: 2285
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2285
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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