>gb|AC099055.2| Homo sapiens chromosome 3 clone RP11-527L9, complete sequence
          Length = 155962

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     acaaaaaagatagaagattaa 50
              |||||||||||||||||||||
Sbjct: 140659 acaaaaaagatagaagattaa 140639

>gb|AF269962.1|AF269962 Staphylococcus epidermidis strain SR1 clone step.1036a10 genomic
           sequence
          Length = 3305

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 234 taaaaaagcaaacgtaaaaat 254
           |||||||||||||||||||||
Sbjct: 585 taaaaaagcaaacgtaaaaat 565

>gb|AF269723.1|AF269723 Staphylococcus epidermidis strain SR1 clone step.1019h08 genomic
            sequence
          Length = 3354

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 234  taaaaaagcaaacgtaaaaat 254
            |||||||||||||||||||||
Sbjct: 1881 taaaaaagcaaacgtaaaaat 1901

>gb|AF269621.1|AF269621 Staphylococcus epidermidis strain SR1 clone step.1014b04 genomic
           sequence
          Length = 3133

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 taaaaaagcaaacgtaaaaat 254
           |||||||||||||||||||||
Sbjct: 434 taaaaaagcaaacgtaaaaat 454

>gb|AF261757.1|AF261757 Staphylococcus epidermidis pyruvate dehydrogenase complex subunit
           E2 (pdhC) gene, complete cds
          Length = 1716

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 taaaaaagcaaacgtaaaaat 254
           |||||||||||||||||||||
Sbjct: 13  taaaaaagcaaacgtaaaaat 33

>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    taaaaaagcaaacgtaaaaat 254
              |||||||||||||||||||||
Sbjct: 677606 taaaaaagcaaacgtaaaaat 677626

>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    taaaaaagcaaacgtaaaaat 254
              |||||||||||||||||||||
Sbjct: 785093 taaaaaagcaaacgtaaaaat 785113

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    acaacaacagataagtgcaa 101
             ||||||||||||||||||||
Sbjct: 19320 acaacaacagataagtgcaa 19339

>gb|AC159704.1| Trypanosoma brucei chromosome 3 clone RPCI93-6N20, complete sequence
          Length = 157906

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    acaacaacagataagtgcaa 101
             ||||||||||||||||||||
Sbjct: 19320 acaacaacagataagtgcaa 19339

>gb|AY389906.1| Protopterus dolloi ferritin heavy polypeptide 1 mRNA, partial cds
          Length = 471

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 atgctcatgctcttcttcag 160
           ||||||||||||||||||||
Sbjct: 163 atgctcatgctcttcttcag 144

>ref|XM_824673.1| Trypanosoma brucei TREU927 variant surface glycoprotein
            (Tb11.24.0007) partial mRNA
          Length = 1473

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   acaacaacagataagtgcaa 101
            ||||||||||||||||||||
Sbjct: 1294 acaacaacagataagtgcaa 1313

>ref|XM_821850.1| Trypanosoma brucei TREU927 clone RPCI93-6N20 variant surface
            glycoprotein (Tb927.3.180) partial mRNA
          Length = 1551

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   acaacaacagataagtgcaa 101
            ||||||||||||||||||||
Sbjct: 1405 acaacaacagataagtgcaa 1424

>emb|AL929181.2| Mouse DNA sequence from clone RP23-391E20 on chromosome 4 Contains a
             malate dehydrogenase, mitochondrial (Mor1) pseudogene and
             the 3' end of the Ptprd gene for protein tyrosine
             phosphatase receptor type D, complete sequence
          Length = 126280

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   cagcagtgagctaaatgtta 305
             ||||||||||||||||||||
Sbjct: 13121 cagcagtgagctaaatgtta 13102

>gb|M22961.1|PPHDELCG Human papillomavirus type 5 DNA and naturally occurring deletions in
            the late region of the virus
          Length = 7746

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 236  aaaaagcaaacgtaaaaattgagg 259
            |||| |||||||||||||||||||
Sbjct: 7446 aaaacgcaaacgtaaaaattgagg 7469

>gb|DQ080001.1| Human papillomavirus type 5 L2 (L2) and L1 (L1) genes, complete cds
          Length = 3551

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 236  aaaaagcaaacgtaaaaattgagg 259
            |||| |||||||||||||||||||
Sbjct: 3447 aaaacgcaaacgtaaaaattgagg 3470

>gb|AF317924.1|AF317924 Trypanosoma evansi strain IL3927 clone BV14-24/7B variable surface
            glycoprotein (VSG) mRNA, complete cds
          Length = 1604

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   acaacaacagataagtgcaa 101
            ||||||||||||||||||||
Sbjct: 1388 acaacaacagataagtgcaa 1407

>gb|M17463.1|PPH5CG Human papillomoavirus type 5, complete genome
          Length = 7746

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 236  aaaaagcaaacgtaaaaattgagg 259
            |||| |||||||||||||||||||
Sbjct: 7446 aaaacgcaaacgtaaaaattgagg 7469

>gb|AC021752.5|AC021752 Homo sapiens chromosome 15 clone CTD-2378E12 map 15q21, complete
             sequence
          Length = 100139

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 28    aaacaaaaaagatagaagattaatcctccaaa 59
             ||||||||||||||| | || |||||||||||
Sbjct: 52333 aaacaaaaaagataggaaataaatcctccaaa 52302

>gb|AF030078.1| Trypanosoma brucei brucei clone pSUB60B variant surface
           glycoprotein-like gene, partial sequence
          Length = 516

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  acaacaacagataagtgcaa 101
           ||||||||||||||||||||
Sbjct: 385 acaacaacagataagtgcaa 404

>gb|AF030077.1| Trypanosoma brucei brucei clone pSUB60A variant surface
           glycoprotein-like gene, partial sequence
          Length = 579

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  acaacaacagataagtgcaa 101
           ||||||||||||||||||||
Sbjct: 413 acaacaacagataagtgcaa 432

>gb|AF030076.1| Trypanosoma brucei brucei clone pSUB55 variant surface glycoprotein
           gene, partial cds
          Length = 547

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  acaacaacagataagtgcaa 101
           ||||||||||||||||||||
Sbjct: 417 acaacaacagataagtgcaa 436

>emb|BX005201.7| Zebrafish DNA sequence from clone CH211-129C21 in linkage group 22,
              complete sequence
          Length = 184499

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    taaaaaagcaaacgtaaaaa 253
              ||||||||||||||||||||
Sbjct: 122537 taaaaaagcaaacgtaaaaa 122518

>gb|AC110248.22| Mus musculus chromosome 3, clone RP23-257P11, complete sequence
          Length = 206915

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tacaacaacagataagtgca 100
             ||||||||||||||||||||
Sbjct: 63175 tacaacaacagataagtgca 63194

>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA,
              complete genome
          Length = 697724

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     aaaagatagaagattaatcc 53
              ||||||||||||||||||||
Sbjct: 252583 aaaagatagaagattaatcc 252564

>gb|L31605.1|TRBSUB60A Trypanosoma brucei brucei (clone pSUB60) variant surface glycoprotein
            DNA sequence
          Length = 2679

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   acaacaacagataagtgcaa 101
            ||||||||||||||||||||
Sbjct: 1890 acaacaacagataagtgcaa 1909

>gb|L31604.1|TRBSUB55A Trypanosoma brucei brucei (clone pSUB55) variant surface glycoprotein
            DNA sequence
          Length = 2615

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   acaacaacagataagtgcaa 101
            ||||||||||||||||||||
Sbjct: 1915 acaacaacagataagtgcaa 1934


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,646,542
Number of Sequences: 3902068
Number of extensions: 3646542
Number of successful extensions: 65878
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65822
Number of HSP's gapped (non-prelim): 56
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)