ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184954.1| Oryza sativa (japonica cultivar-group), mRNA 224 3e-55
2dbj|AK101999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
3dbj|AK073607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
4dbj|AK104029.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
5dbj|AK099029.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 149 1e-32
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
8gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 149 1e-32
9gb|BT018977.1| Zea mays clone Contig411.F mRNA sequence 78 4e-11
10gb|AY103902.1| Zea mays PCO148796 mRNA sequence 70 1e-08
11gb|AC092133.2| Homo sapiens chromosome 16 clone RP11-20D16, comp... 44 0.59
12gb|AC108131.2| Homo sapiens chromosome 16 clone RP11-337N9, comp... 44 0.59
13emb|BX539316.6| Mouse DNA sequence from clone RP24-216F23 on chr... 44 0.59
14gb|AF343914.1| Campylobacter jejuni NCTC 11828 LOS biosynthesis ... 42 2.3
15gb|AY501976.1| Campylobacter jejuni strain TGH 9011 contig147 Tg... 42 2.3
16gb|AC161264.2| Mus musculus BAC clone RP23-275J22 from chromosom... 40 9.2
17ref|XM_713350.1| Candida albicans SC5314 putative mitochondrial ... 40 9.2
18gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, co... 40 9.2
19gb|AC123822.4| Mus musculus BAC clone RP23-477F12 from chromosom... 40 9.2
20gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, c... 40 9.2
21gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP... 40 9.2
22gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, compl... 40 9.2
23dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 9.2
24gb|AC009262.5| Homo sapiens chromosome 7 clone RP11-179B11, comp... 40 9.2
25gb|AC069427.10| Homo sapiens 3 BAC RP11-371I22 (Roswell Park Can... 40 9.2
26ref|NM_001039213.1| Homo sapiens carcinoembryonic antigen-relate... 40 9.2
27gb|AC093428.2| Homo sapiens chromosome 1 clone RP11-86F24, compl... 40 9.2
28gb|DQ384534.1| Angiostrongylus cantonensis putative galectin pro... 40 9.2
29gb|AC005686.1|AC005686 Homo sapiens clone GS1-234F24 from 7p14-1... 40 9.2
30dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region 40 9.2
31gb|AC018768.7| Homo sapiens chromosome 16 clone RP11-564M2, comp... 40 9.2
32emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chro... 40 9.2
33gb|AF070133.1|AF070133 Prochlorococcus sp. clone G85Br-100 cytoc... 40 9.2
34emb|CT573501.1| Medicago truncatula chromosome 5 clone mth2-60o2... 40 9.2
35gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, comple... 40 9.2
36emb|BX323847.8| Zebrafish DNA sequence from clone CH211-95G21 in... 40 9.2
37gb|AF479646.1| Homo sapiens carcinoembryonic antigen like-2 prot... 40 9.2
38emb|AL928656.4| Zebrafish DNA sequence from clone CH211-10G22, c... 40 9.2
39emb|AL806533.8| Mouse DNA sequence from clone RP23-468I23 on chr... 40 9.2 
>ref|NM_184954.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2488

 Score =  224 bits (113), Expect = 3e-55
 Identities = 362/445 (81%)
 Strand = Plus / Minus

                                                                        
Query: 190  gtcagatcaatcttgtaatggtcatcgagcttcttaagaatgtcgctaaaagtagacgtg 249
            ||||| |||||||||||  | || || ||||| ||||||||||| || ||||||| ||||
Sbjct: 1992 gtcaggtcaatcttgtagcgatcctcaagctttttaagaatgtcactgaaagtagccgtg 1933

                                                                        
Query: 250  ttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttactgggt 309
            ||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||||||
Sbjct: 1932 ttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttactgggt 1873

                                                                        
Query: 310  agacccccttctgctgattcgcctttgctcttcattgcctctttacctgatgacttattt 369
            |||||  ||||||||||||| ||||| | |||  |  ||| ||||||||||||||| || 
Sbjct: 1872 agacctacttctgctgattctcctttaccctttgtcacctttttacctgatgacttcttg 1813

                                                                        
Query: 370  tcttctatcaccttttcagagcttggagtacgctttgatataatgggtttcttcttccta 429
            |||| |||| ||||||||||||||| || |||||||| | | |  | |||||||||||||
Sbjct: 1812 tcttttatctccttttcagagcttgaaggacgctttggtgtgacagatttcttcttccta 1753

                                                                        
Query: 430  gagaagacctttgcactctcatcaaggctctccttttccttggaacctttggatggtgat 489
            |||||||| |||||||| || ||| |||||||||||||||||||| |||| || | || |
Sbjct: 1752 gagaagacttttgcactgtcctcagggctctccttttccttggaaacttttgaagatggt 1693

                                                                        
Query: 490  gttttgcctgcagtcttgcttgctgtccttggcggacttgtcctatgggtgctcccagca 549
            ||||||| || | |||||||  |||||||||| | || |||| | ||| ||||||| |  
Sbjct: 1692 gttttgcttgaactcttgctcactgtccttggagtacctgtcttgtggctgctccctgtt 1633

                                                                        
Query: 550  gcagccttctttttacctgcagaatcttttacttccgaggacttcctacttgccttttct 609
            ||||||||||||||||  || | ||||||| | || ||||| ||| |  ||||||| |||
Sbjct: 1632 gcagccttctttttactagcggtatcttttgcatctgaggagttcttctttgccttctct 1573

                                     
Query: 610  tcggcagagtcatagccatcttcct 634
            |   |||| |||||| |||||||||
Sbjct: 1572 ttctcagaatcatagtcatcttcct 1548
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>dbj|AK101999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079L16, full
            insert sequence
          Length = 2572

 Score =  224 bits (113), Expect = 3e-55
 Identities = 362/445 (81%)
 Strand = Plus / Minus

                                                                        
Query: 190  gtcagatcaatcttgtaatggtcatcgagcttcttaagaatgtcgctaaaagtagacgtg 249
            ||||| |||||||||||  | || || ||||| ||||||||||| || ||||||| ||||
Sbjct: 2076 gtcaggtcaatcttgtagcgatcctcaagctttttaagaatgtcactgaaagtagccgtg 2017

                                                                        
Query: 250  ttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttactgggt 309
            ||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||||||
Sbjct: 2016 ttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttactgggt 1957

                                                                        
Query: 310  agacccccttctgctgattcgcctttgctcttcattgcctctttacctgatgacttattt 369
            |||||  ||||||||||||| ||||| | |||  |  ||| ||||||||||||||| || 
Sbjct: 1956 agacctacttctgctgattctcctttaccctttgtcacctttttacctgatgacttcttg 1897

                                                                        
Query: 370  tcttctatcaccttttcagagcttggagtacgctttgatataatgggtttcttcttccta 429
            |||| |||| ||||||||||||||| || |||||||| | | |  | |||||||||||||
Sbjct: 1896 tcttttatctccttttcagagcttgaaggacgctttggtgtgacagatttcttcttccta 1837

                                                                        
Query: 430  gagaagacctttgcactctcatcaaggctctccttttccttggaacctttggatggtgat 489
            |||||||| |||||||| || ||| |||||||||||||||||||| |||| || | || |
Sbjct: 1836 gagaagacttttgcactgtcctcagggctctccttttccttggaaacttttgaagatggt 1777

                                                                        
Query: 490  gttttgcctgcagtcttgcttgctgtccttggcggacttgtcctatgggtgctcccagca 549
            ||||||| || | |||||||  |||||||||| | || |||| | ||| ||||||| |  
Sbjct: 1776 gttttgcttgaactcttgctcactgtccttggagtacctgtcttgtggctgctccctgtt 1717

                                                                        
Query: 550  gcagccttctttttacctgcagaatcttttacttccgaggacttcctacttgccttttct 609
            ||||||||||||||||  || | ||||||| | || ||||| ||| |  ||||||| |||
Sbjct: 1716 gcagccttctttttactagcggtatcttttgcatctgaggagttcttctttgccttctct 1657

                                     
Query: 610  tcggcagagtcatagccatcttcct 634
            |   |||| |||||| |||||||||
Sbjct: 1656 ttctcagaatcatagtcatcttcct 1632
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>dbj|AK073607.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048A10, full
            insert sequence
          Length = 2621

 Score =  224 bits (113), Expect = 3e-55
 Identities = 362/445 (81%)
 Strand = Plus / Minus

                                                                        
Query: 190  gtcagatcaatcttgtaatggtcatcgagcttcttaagaatgtcgctaaaagtagacgtg 249
            ||||| |||||||||||  | || || ||||| ||||||||||| || ||||||| ||||
Sbjct: 2125 gtcaggtcaatcttgtagcgatcctcaagctttttaagaatgtcactgaaagtagccgtg 2066

                                                                        
Query: 250  ttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttactgggt 309
            ||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||||||
Sbjct: 2065 ttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttactgggt 2006

                                                                        
Query: 310  agacccccttctgctgattcgcctttgctcttcattgcctctttacctgatgacttattt 369
            |||||  ||||||||||||| ||||| | |||  |  ||| ||||||||||||||| || 
Sbjct: 2005 agacctacttctgctgattctcctttaccctttgtcacctttttacctgatgacttcttg 1946

                                                                        
Query: 370  tcttctatcaccttttcagagcttggagtacgctttgatataatgggtttcttcttccta 429
            |||| |||| ||||||||||||||| || |||||||| | | |  | |||||||||||||
Sbjct: 1945 tcttttatctccttttcagagcttgaaggacgctttggtgtgacagatttcttcttccta 1886

                                                                        
Query: 430  gagaagacctttgcactctcatcaaggctctccttttccttggaacctttggatggtgat 489
            |||||||| |||||||| || ||| |||||||||||||||||||| |||| || | || |
Sbjct: 1885 gagaagacttttgcactgtcctcagggctctccttttccttggaaacttttgaagatggt 1826

                                                                        
Query: 490  gttttgcctgcagtcttgcttgctgtccttggcggacttgtcctatgggtgctcccagca 549
            ||||||| || | |||||||  |||||||||| | || |||| | ||| ||||||| |  
Sbjct: 1825 gttttgcttgaactcttgctcactgtccttggagtacctgtcttgtggctgctccctgtt 1766

                                                                        
Query: 550  gcagccttctttttacctgcagaatcttttacttccgaggacttcctacttgccttttct 609
            ||||||||||||||||  || | ||||||| | || ||||| ||| |  ||||||| |||
Sbjct: 1765 gcagccttctttttactagcggtatcttttgcatctgaggagttcttctttgccttctct 1706

                                     
Query: 610  tcggcagagtcatagccatcttcct 634
            |   |||| |||||| |||||||||
Sbjct: 1705 ttctcagaatcatagtcatcttcct 1681
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>dbj|AK104029.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B06, full
           insert sequence
          Length = 894

 Score =  222 bits (112), Expect = 1e-54
 Identities = 310/376 (82%)
 Strand = Plus / Minus

                                                                       
Query: 190 gtcagatcaatcttgtaatggtcatcgagcttcttaagaatgtcgctaaaagtagacgtg 249
           ||||| |||||||||||  | || || ||||| ||||||||||| || ||||||| ||||
Sbjct: 398 gtcaggtcaatcttgtagcgatcctcaagctttttaagaatgtcactgaaagtagccgtg 339

                                                                       
Query: 250 ttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttactgggt 309
           ||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||||||
Sbjct: 338 ttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttactgggt 279

                                                                       
Query: 310 agacccccttctgctgattcgcctttgctcttcattgcctctttacctgatgacttattt 369
           |||||  ||||||||||||| ||||| | |||  |  ||| ||||||||||||||| || 
Sbjct: 278 agacctacttctgctgattctcctttaccctttgtcacctttttacctgatgacttcttg 219

                                                                       
Query: 370 tcttctatcaccttttcagagcttggagtacgctttgatataatgggtttcttcttccta 429
           |||| |||| ||||||||||||||| || |||||||| | | |  | |||||||||||||
Sbjct: 218 tcttttatctccttttcagagcttgaaggacgctttggtgtgacagatttcttcttccta 159

                                                                       
Query: 430 gagaagacctttgcactctcatcaaggctctccttttccttggaacctttggatggtgat 489
           |||||||| |||||||| || ||| |||||||||||||||||||| |||| || | || |
Sbjct: 158 gagaagacttttgcactgtcctcagggctctccttttccttggaaacttttgaagatggt 99

                                                                       
Query: 490 gttttgcctgcagtcttgcttgctgtccttggcggacttgtcctatgggtgctcccagca 549
           ||||||| || | |||||||  |||||||||| | || |||| | ||| ||||||| |  
Sbjct: 98  gttttgcttgaactcttgctcactgtccttggagtacctgtcttgtggctgctccctgtt 39

                           
Query: 550 gcagccttctttttac 565
           ||||||||||||||||
Sbjct: 38  gcagccttctttttac 23
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>dbj|AK099029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J21, full
            insert sequence
          Length = 2619

 Score =  216 bits (109), Expect = 7e-53
 Identities = 361/445 (81%)
 Strand = Plus / Minus

                                                                        
Query: 190  gtcagatcaatcttgtaatggtcatcgagcttcttaagaatgtcgctaaaagtagacgtg 249
            ||||| |||||||||||  | || || ||||| ||||||||||| || ||||||| ||||
Sbjct: 2124 gtcaggtcaatcttgtagcgatcctcaagctttttaagaatgtcactgaaagtagccgtg 2065

                                                                        
Query: 250  ttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttactgggt 309
            ||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||||||
Sbjct: 2064 ttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttactgggt 2005

                                                                        
Query: 310  agacccccttctgctgattcgcctttgctcttcattgcctctttacctgatgacttattt 369
            |||||  ||||||||||||| ||||| | |||  |  ||| ||||||||||||||| || 
Sbjct: 2004 agacctacttctgctgattctcctttaccctttgtcacctttttacctgatgacttcttg 1945

                                                                        
Query: 370  tcttctatcaccttttcagagcttggagtacgctttgatataatgggtttcttcttccta 429
            |||| |||| ||||||||||||||| || |||||||| | | |  | |||||||||||||
Sbjct: 1944 tcttttatctccttttcagagcttgaaggacgctttggtgtgacagatttcttcttccta 1885

                                                                        
Query: 430  gagaagacctttgcactctcatcaaggctctccttttccttggaacctttggatggtgat 489
             ||||||| |||||||| || ||| |||||||||||||||||||| |||| || | || |
Sbjct: 1884 tagaagacttttgcactgtcctcagggctctccttttccttggaaacttttgaagatggt 1825

                                                                        
Query: 490  gttttgcctgcagtcttgcttgctgtccttggcggacttgtcctatgggtgctcccagca 549
            ||||||| || | |||||||  |||||||||| | || |||| | ||| ||||||| |  
Sbjct: 1824 gttttgcttgaactcttgctcactgtccttggagtacctgtcttgtggctgctccctgtt 1765

                                                                        
Query: 550  gcagccttctttttacctgcagaatcttttacttccgaggacttcctacttgccttttct 609
            ||||||||||||||||  || | ||||||| | || ||||| ||| |  ||||||| |||
Sbjct: 1764 gcagccttctttttactagcggtatcttttgcatctgaggagttcttctttgccttctct 1705

                                     
Query: 610  tcggcagagtcatagccatcttcct 634
            |   |||| |||||| |||||||||
Sbjct: 1704 ttctcagaatcatagtcatcttcct 1680
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  149 bits (75), Expect = 1e-32
 Identities = 231/283 (81%)
 Strand = Plus / Plus

                                                                            
Query: 352      ttacctgatgacttattttcttctatcaccttttcagagcttggagtacgctttgatata 411
                |||||||||||||| || |||| |||| ||||||||||||||| || |||||||| | | 
Sbjct: 22029682 ttacctgatgacttcttgtcttttatctccttttcagagcttgaaggacgctttggtgtg 22029741

                                                                            
Query: 412      atgggtttcttcttcctagagaagacctttgcactctcatcaaggctctccttttccttg 471
                |  | ||||||||||||||||||||| |||||||| || ||| |||||||||||||||||
Sbjct: 22029742 acagatttcttcttcctagagaagacttttgcactgtcctcagggctctccttttccttg 22029801

                                                                            
Query: 472      gaacctttggatggtgatgttttgcctgcagtcttgcttgctgtccttggcggacttgtc 531
                ||| |||| || | || |||||||| || | |||||||  |||||||||| | || ||||
Sbjct: 22029802 gaaacttttgaagatggtgttttgcttgaactcttgctcactgtccttggagtacctgtc 22029861

                                                                            
Query: 532      ctatgggtgctcccagcagcagccttctttttacctgcagaatcttttacttccgaggac 591
                 | ||| ||||||| |  ||||||||||||||||  || | ||||||| | || ||||| 
Sbjct: 22029862 ttgtggctgctccctgttgcagccttctttttactagcggtatcttttgcatctgaggag 22029921

                                                           
Query: 592      ttcctacttgccttttcttcggcagagtcatagccatcttcct 634
                ||| |  ||||||| ||||   |||| |||||| |||||||||
Sbjct: 22029922 ttcttctttgccttctctttctcagaatcatagtcatcttcct 22029964



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                            
Query: 246      cgtgttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttact 305
                ||||||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||
Sbjct: 22029031 cgtgttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttact 22029090

                                              
Query: 306      gggtagacccccttctgctgattcgccttt 335
                |||||||||  ||||||||||||| |||||
Sbjct: 22029091 gggtagacctacttctgctgattctccttt 22029120
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  149 bits (75), Expect = 1e-32
 Identities = 231/283 (81%)
 Strand = Plus / Plus

                                                                            
Query: 352      ttacctgatgacttattttcttctatcaccttttcagagcttggagtacgctttgatata 411
                |||||||||||||| || |||| |||| ||||||||||||||| || |||||||| | | 
Sbjct: 22022711 ttacctgatgacttcttgtcttttatctccttttcagagcttgaaggacgctttggtgtg 22022770

                                                                            
Query: 412      atgggtttcttcttcctagagaagacctttgcactctcatcaaggctctccttttccttg 471
                |  | ||||||||||||||||||||| |||||||| || ||| |||||||||||||||||
Sbjct: 22022771 acagatttcttcttcctagagaagacttttgcactgtcctcagggctctccttttccttg 22022830

                                                                            
Query: 472      gaacctttggatggtgatgttttgcctgcagtcttgcttgctgtccttggcggacttgtc 531
                ||| |||| || | || |||||||| || | |||||||  |||||||||| | || ||||
Sbjct: 22022831 gaaacttttgaagatggtgttttgcttgaactcttgctcactgtccttggagtacctgtc 22022890

                                                                            
Query: 532      ctatgggtgctcccagcagcagccttctttttacctgcagaatcttttacttccgaggac 591
                 | ||| ||||||| |  ||||||||||||||||  || | ||||||| | || ||||| 
Sbjct: 22022891 ttgtggctgctccctgttgcagccttctttttactagcggtatcttttgcatctgaggag 22022950

                                                           
Query: 592      ttcctacttgccttttcttcggcagagtcatagccatcttcct 634
                ||| |  ||||||| ||||   |||| |||||| |||||||||
Sbjct: 22022951 ttcttctttgccttctctttctcagaatcatagtcatcttcct 22022993



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                            
Query: 246      cgtgttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttact 305
                ||||||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||
Sbjct: 22022060 cgtgttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttact 22022119

                                              
Query: 306      gggtagacccccttctgctgattcgccttt 335
                |||||||||  ||||||||||||| |||||
Sbjct: 22022120 gggtagacctacttctgctgattctccttt 22022149
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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
              sequence
          Length = 167397

 Score =  149 bits (75), Expect = 1e-32
 Identities = 231/283 (81%)
 Strand = Plus / Minus

                                                                          
Query: 352    ttacctgatgacttattttcttctatcaccttttcagagcttggagtacgctttgatata 411
              |||||||||||||| || |||| |||| ||||||||||||||| || |||||||| | | 
Sbjct: 118600 ttacctgatgacttcttgtcttttatctccttttcagagcttgaaggacgctttggtgtg 118541

                                                                          
Query: 412    atgggtttcttcttcctagagaagacctttgcactctcatcaaggctctccttttccttg 471
              |  | ||||||||||||||||||||| |||||||| || ||| |||||||||||||||||
Sbjct: 118540 acagatttcttcttcctagagaagacttttgcactgtcctcagggctctccttttccttg 118481

                                                                          
Query: 472    gaacctttggatggtgatgttttgcctgcagtcttgcttgctgtccttggcggacttgtc 531
              ||| |||| || | || |||||||| || | |||||||  |||||||||| | || ||||
Sbjct: 118480 gaaacttttgaagatggtgttttgcttgaactcttgctcactgtccttggagtacctgtc 118421

                                                                          
Query: 532    ctatgggtgctcccagcagcagccttctttttacctgcagaatcttttacttccgaggac 591
               | ||| ||||||| |  ||||||||||||||||  || | ||||||| | || ||||| 
Sbjct: 118420 ttgtggctgctccctgttgcagccttctttttactagcggtatcttttgcatctgaggag 118361

                                                         
Query: 592    ttcctacttgccttttcttcggcagagtcatagccatcttcct 634
              ||| |  ||||||| ||||   |||| |||||| |||||||||
Sbjct: 118360 ttcttctttgccttctctttctcagaatcatagtcatcttcct 118318



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                          
Query: 246    cgtgttgaagtcaacttttttaaggattccgataatggtctttttcaactcagccttact 305
              ||||||||| |||||||||||||||||| |  | ||||| ||  ||| |||  |||||||
Sbjct: 119251 cgtgttgaaatcaacttttttaaggatttcagttatggttttcctcagctcgtccttact 119192

                                            
Query: 306    gggtagacccccttctgctgattcgccttt 335
              |||||||||  ||||||||||||| |||||
Sbjct: 119191 gggtagacctacttctgctgattctccttt 119162
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>gb|BT018977.1| Zea mays clone Contig411.F mRNA sequence
          Length = 1456

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                       
Query: 189 ggtcagatcaatcttgtaatggtcatcgagcttcttaagaatgtcgctaaaagtagacgt 248
           ||||||||| || ||||| || |  |||||||||||||||||||| || ||||| | |||
Sbjct: 937 ggtcagatccattttgtagtgattgtcgagcttcttaagaatgtcactgaaagttgccgt 878

                                                  
Query: 249 gttgaagtcaacttttttaaggattccgataatggtctt 287
           ||||||||||||||| || |||||| |  ||||||||||
Sbjct: 877 gttgaagtcaactttcttgaggatttccgtaatggtctt 839



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 555 cttctttttacctgcagaatcttttacttccga 587
           |||||||||||||| ||| |||||||| |||||
Sbjct: 592 cttctttttacctgaagattcttttacctccga 560
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>gb|AY103902.1| Zea mays PCO148796 mRNA sequence
          Length = 1865

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                        
Query: 189  ggtcagatcaatcttgtaatggtcatcgagcttcttaagaatgtcgctaaaagtagacgt 248
            ||||||||| || ||||| || |  ||||||||||| |||||||| || ||||| | |||
Sbjct: 1376 ggtcagatccattttgtagtgattgtcgagcttcttcagaatgtcactgaaagttgccgt 1317

                                                   
Query: 249  gttgaagtcaacttttttaaggattccgataatggtctt 287
            ||||||||||||||| || |||||| |  ||||||||||
Sbjct: 1316 gttgaagtcaactttcttgaggatttcagtaatggtctt 1278



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 555  cttctttttacctgcagaatcttttacttccgaggacttcctacttgccttttctt 610
            |||||||||||||| ||| |||||||| |||||  ||||| | | |||||||||||
Sbjct: 1031 cttctttttacctgaagattcttttacctccgataacttcttccctgccttttctt 976
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>gb|AC092133.2| Homo sapiens chromosome 16 clone RP11-20D16, complete sequence
          Length = 156351

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 350   ctttacctgatgacttattttcttct 375
             |||||||||||| |||||||||||||
Sbjct: 18309 ctttacctgatggcttattttcttct 18334
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>gb|AC108131.2| Homo sapiens chromosome 16 clone RP11-337N9, complete sequence
          Length = 151941

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 350   ctttacctgatgacttattttcttct 375
             |||||||||||| |||||||||||||
Sbjct: 75202 ctttacctgatggcttattttcttct 75227
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>emb|BX539316.6| Mouse DNA sequence from clone RP24-216F23 on chromosome 7, complete
             sequence
          Length = 178673

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    cttcaaccagtgacctttgctc 73
             ||||||||||||||||||||||
Sbjct: 15487 cttcaaccagtgacctttgctc 15466



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     cttcaaccagtgacctttgc 71
              ||||||||||||||||||||
Sbjct: 118189 cttcaaccagtgacctttgc 118170
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>gb|AF343914.1| Campylobacter jejuni NCTC 11828 LOS biosynthesis cluster, partial
            sequence
          Length = 15671

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 368  tttcttctatcaccttttcag 388
            |||||||||||||||||||||
Sbjct: 3161 tttcttctatcaccttttcag 3181
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>gb|AY501976.1| Campylobacter jejuni strain TGH 9011 contig147 Tgh114, Tgh020, Tgh021,
             Tgh022, Tgh160, Tgh011, Tgh42, Tgh043, Tgh004, Tgh001,
             Tgh002, and Tgh003s genes, complete cds
          Length = 12209

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   tttcttctatcaccttttcag 388
             |||||||||||||||||||||
Sbjct: 12186 tttcttctatcaccttttcag 12166
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>gb|AC161264.2| Mus musculus BAC clone RP23-275J22 from chromosome 9, complete sequence
          Length = 131422

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 619    tcatagccatcttcctgctc 638
              ||||||||||||||||||||
Sbjct: 115347 tcatagccatcttcctgctc 115366
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>ref|XM_713350.1| Candida albicans SC5314 putative mitochondrial complex I
           (CaO19_10861), mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 365 tattttcttctatcaccttt 384
           ||||||||||||||||||||
Sbjct: 380 tattttcttctatcaccttt 361
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>gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, complete sequence
          Length = 209936

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   cagcagcagccttcttttta 564
             ||||||||||||||||||||
Sbjct: 98360 cagcagcagccttcttttta 98379
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>gb|AC123822.4| Mus musculus BAC clone RP23-477F12 from chromosome 7, complete sequence
          Length = 179943

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     cttcaaccagtgacctttgc 71
              ||||||||||||||||||||
Sbjct: 159913 cttcaaccagtgacctttgc 159932
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>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence
          Length = 212273

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   ttcttcttcctagagaagac 437
             ||||||||||||||||||||
Sbjct: 80068 ttcttcttcctagagaagac 80087
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>gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP23-75P20, complete
             sequence
          Length = 234105

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ttatcttgatcatcatcctc 128
             ||||||||||||||||||||
Sbjct: 23072 ttatcttgatcatcatcctc 23053
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>gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, complete sequence
          Length = 137411

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   gacgtgttgaagtcaacttt 263
             ||||||||||||||||||||
Sbjct: 42349 gacgtgttgaagtcaacttt 42330
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 451     tcaaggctctccttttcctt 470
               ||||||||||||||||||||
Sbjct: 4765562 tcaaggctctccttttcctt 4765581
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>gb|AC009262.5| Homo sapiens chromosome 7 clone RP11-179B11, complete sequence
          Length = 149255

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 239   aagtagacgtgttgaagtcaactt 262
             ||||||| ||||||||||||||||
Sbjct: 59213 aagtagaagtgttgaagtcaactt 59236
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>gb|AC069427.10| Homo sapiens 3 BAC RP11-371I22 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 133858

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  ctcttcattgcctctttacc 356
            ||||||||||||||||||||
Sbjct: 2252 ctcttcattgcctctttacc 2233
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>ref|NM_001039213.1| Homo sapiens carcinoembryonic antigen-related cell adhesion molecule
            16 (CEACAM16), mRNA
          Length = 1797

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 244  gacgtgttgaagtcaacttt 263
            ||||||||||||||||||||
Sbjct: 1051 gacgtgttgaagtcaacttt 1032
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>gb|AC093428.2| Homo sapiens chromosome 1 clone RP11-86F24, complete sequence
          Length = 152858

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   cttctttttacctgcagaat 574
             ||||||||||||||||||||
Sbjct: 49814 cttctttttacctgcagaat 49795
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>gb|DQ384534.1| Angiostrongylus cantonensis putative galectin protein 10 mRNA,
           partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 191 tcagatcaatcttgtaatggtcat 214
           |||| |||||||||||||||||||
Sbjct: 313 tcagttcaatcttgtaatggtcat 290
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>gb|AC005686.1|AC005686 Homo sapiens clone GS1-234F24 from 7p14-15, complete sequence
          Length = 141387

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   aagtagacgtgttgaagtcaactt 262
             ||||||| ||||||||||||||||
Sbjct: 40613 aagtagaagtgttgaagtcaactt 40590
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>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region
          Length = 425935

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   atcatcatcctcctgctccg 136
             ||||||||||||||||||||
Sbjct: 18182 atcatcatcctcctgctccg 18163
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>gb|AC018768.7| Homo sapiens chromosome 16 clone RP11-564M2, complete sequence
          Length = 198093

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    gtctttttcaactcagcctt 302
              ||||||||||||||||||||
Sbjct: 105805 gtctttttcaactcagcctt 105824
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>emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chromosome X, complete
             sequence
          Length = 112893

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ttatcttgatcatcatcctc 128
             ||||||||||||||||||||
Sbjct: 28976 ttatcttgatcatcatcctc 28957
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>gb|AF070133.1|AF070133 Prochlorococcus sp. clone G85Br-100 cytochrome b (petB) and
           cytochrome b6/f complex subunit IV (petD) genes, partial
           cds
          Length = 504

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 atcgagcttcttaagaatgt 232
           ||||||||||||||||||||
Sbjct: 465 atcgagcttcttaagaatgt 446
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>emb|CT573501.1| Medicago truncatula chromosome 5 clone mth2-60o20, COMPLETE SEQUENCE
          Length = 114271

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   attttcttctatcacctttt 385
             ||||||||||||||||||||
Sbjct: 35626 attttcttctatcacctttt 35645
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>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence
          Length = 179732

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 371    cttctatcaccttttcagagcttg 394
              |||||||||||||||||| |||||
Sbjct: 145626 cttctatcaccttttcagggcttg 145603
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>emb|BX323847.8| Zebrafish DNA sequence from clone CH211-95G21 in linkage group 12,
             complete sequence
          Length = 154483

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   tttgctcttcattgcctctt 352
             ||||||||||||||||||||
Sbjct: 36498 tttgctcttcattgcctctt 36479
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>gb|AF479646.1| Homo sapiens carcinoembryonic antigen like-2 protein (CEAL2) gene,
             complete cds
          Length = 19950

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   gacgtgttgaagtcaacttt 263
             ||||||||||||||||||||
Sbjct: 10816 gacgtgttgaagtcaacttt 10797
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>emb|AL928656.4| Zebrafish DNA sequence from clone CH211-10G22, complete sequence
          Length = 153897

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    tttgctcttcattgcctctt 352
              ||||||||||||||||||||
Sbjct: 115752 tttgctcttcattgcctctt 115771
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>emb|AL806533.8| Mouse DNA sequence from clone RP23-468I23 on chromosome 4, complete
              sequence
          Length = 201226

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    cctgatgacttattttcttc 374
              ||||||||||||||||||||
Sbjct: 186002 cctgatgacttattttcttc 186021


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,968,564
Number of Sequences: 3902068
Number of extensions: 6968564
Number of successful extensions: 138161
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137952
Number of HSP's gapped (non-prelim): 188
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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