ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 43 0.001
2SIRK_ARATH (O64483) Senescence-induced receptor-like serine/thre... 35 0.16
3HM37_CAEEL (Q93356) Homeobox protein ceh-37 30 5.2
4SIX4_HUMAN (Q9UIU6) Homeobox protein SIX4 (Sine oculis homeobox ... 30 8.8
5IRAK1_MOUSE (Q62406) Interleukin-1 receptor-associated kinase 1 ... 30 8.8
6SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase rec... 30 8.8

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 20/48 (41%), Positives = 29/48 (60%)
 Frame = -2

Query: 671 DELVDARLGKDFNPNEIARMIACAAACVRHSARRRPRMSQVVRALEGD 528
           + LVD  L  ++   E+ ++I  A  C + S   RP+MS+VVR LEGD
Sbjct: 519 EALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 566



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>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein|
           kinase precursor (FLG22-induced receptor-like kinase 1)
          Length = 876

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 665 LVDARLGKDFNPNEIARMIACAAACVRHSARRRPRMSQVVRALE 534
           +VD RL + ++     +M   A AC  H++ +RP MSQVV  L+
Sbjct: 800 IVDQRLRERYDVGSAWKMSEIALACTEHTSAQRPTMSQVVMELK 843



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>HM37_CAEEL (Q93356) Homeobox protein ceh-37|
          Length = 278

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = -2

Query: 569 RPRMSQVVRALEGDVSLEDLN--EGVRPGHSRXXXXXXXXXXXXGQYNEDMKKFKKMAFT 396
           +P++   + + +G V+   L   + + P  +              Q+N D    K + F 
Sbjct: 138 QPQIKSELESCDGAVASGKLGTPKSISPVETTASTTSSNTSAAELQWNGD---HKILGFG 194

Query: 395 TNDYTSSQYSAPTSEYGQIPSASSS 321
            N+ T+S   +PT++    PS+SSS
Sbjct: 195 KNETTTSAAVSPTADNASTPSSSSS 219



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>SIX4_HUMAN (Q9UIU6) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)|
          Length = 760

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 434 NEDMKKFKKMAFTTNDYTSSQY--SAPTSEYGQIPSAS-SSEGQQTQEIETG 288
           ++D+K+FK +  + N  T++ Y  S P S  G IPS     EG QT   + G
Sbjct: 394 SQDVKEFKVLQSSANSATTTSYSPSVPVSFPGLIPSTEVKREGIQTVASQDG 445



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>IRAK1_MOUSE (Q62406) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)|
           (IRAK-1) (IRAK) (Pelle-like protein kinase) (mPLK)
          Length = 710

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 674 YDELVDARLGKDFNPNEIARMIACAAACVRHS-ARRRPRMSQVVRALEG 531
           Y + +D+R G    P ++   +A  A C  H  A++RP M+QV + LEG
Sbjct: 474 YKKHLDSRPGPC--PPQLGLALAQLACCCMHRRAKKRPPMTQVYKRLEG 520



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>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor|
           precursor (EC 2.7.11.1) (S-receptor kinase) (SRK)
          Length = 849

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 638 FNPNEIARMIACAAACVRHSARRRPRMSQVV 546
           F P E+ + I     CV+  A  RP MS VV
Sbjct: 773 FQPQEVLKCIQIGLLCVQELAEHRPAMSSVV 803


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,887,026
Number of Sequences: 219361
Number of extensions: 1614405
Number of successful extensions: 4261
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4260
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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