Clone Information

BLAST Search Result

Clone Name	rbags18g23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY224526.1\| Oryza sativa (japonica cultivar-group) isolate 20...	416	e-113
2	gb\|AY108241.1\| Zea mays PCO134818 mRNA sequence	385	e-103
3	gb\|BT016904.1\| Zea mays clone Contig737 mRNA sequence	369	8e-99
4	gb\|AC137001.2\| Oryza sativa (japonica cultivar-group) chromosome...	323	4e-85
5	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	323	4e-85
6	gb\|AY108243.1\| Zea mays PCO134814 mRNA sequence	260	5e-66
7	ref\|NM_188575.1\| Oryza sativa (japonica cultivar-group), predic...	117	5e-23
8	dbj\|AK103247.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	117	5e-23
9	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	86	2e-13
10	dbj\|AP003434.2\| Oryza sativa (japonica cultivar-group) genomic D...	86	2e-13
11	dbj\|AB110953.1\| Nicotiana tabacum NtPERK1 mRNA for PERK1-like pr...	48	0.038
12	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	42	2.3
13	gb\|BC075486.1\| Xenopus tropicalis MGC89323 protein, mRNA (cDNA c...	42	2.3
14	gb\|AC118755.7\| Homo sapiens chromosome 17, clone RP11-55L4, comp...	42	2.3
15	gb\|AC021218.9\| Homo sapiens BAC clone RP11-525O1 from 7, complet...	42	2.3
16	ref\|XM_689578.1\| PREDICTED: Danio rerio similar to regulatory fa...	42	2.3
17	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
18	ref\|NM_001004970.1\| Xenopus tropicalis MGC89323 protein (MGC8932...	42	2.3
19	gb\|AC087501.16\| Homo sapiens chromosome 17, clone RP11-565F19, c...	42	2.3
20	dbj\|AK099395.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.3
21	dbj\|AK061613.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.3
22	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.3
23	emb\|AL731888.5\|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118...	42	2.3
24	gb\|AC107760.9\| Mus musculus chromosome 15, clone RP23-189K4, com...	40	9.3
25	ref\|XM_322897.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.3
26	ref\|XM_956230.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.3
27	gb\|AC124179.4\| Mus musculus chromosome 12 clone RP23-198B21, com...	40	9.3
28	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	9.3
29	emb\|AJ853849.1\| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AW...	40	9.3
30	gb\|AY426331.1\| Oncorhynchus mykiss nonfunctional transposase mRN...	40	9.3
31	gb\|AC121968.3\| Mus musculus BAC clone RP24-272N4 from chromosome...	40	9.3
32	gb\|AC123940.4\| Mus musculus BAC clone RP23-440M11 from chromosom...	40	9.3
33	gb\|AC113292.6\| Mus musculus chromosome 15, clone RP23-418M3, com...	40	9.3
34	gb\|U80439.1\| Caenorhabditis elegans cosmid C01G8, complete sequence	40	9.3
35	emb\|AL939110.1\|SCO939110 Streptomyces coelicolor A3(2) complete ...	40	9.3
36	emb\|AL670005.1\|NCB11H24 Neurospora crassa DNA linkage group V BA...	40	9.3
37	gb\|AC026798.5\| Homo sapiens chromosome 5 clone CTD-2312P21, comp...	40	9.3
38	dbj\|AK089707.1\| Mus musculus activated spleen cDNA, RIKEN full-l...	40	9.3
39	dbj\|BS000086.1\| Pan troglodytes chromosome 22 clone:PTB-102L15, ...	40	9.3
40	dbj\|AP001687.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	9.3
41	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	9.3
42	emb\|AL929585.11\| Mouse DNA sequence from clone RP23-97O7 on chro...	40	9.3
43	dbj\|AP001253.1\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	9.3

>gb|AY224526.1| Oryza sativa (japonica cultivar-group) isolate 20960 putative
            receptor protein kinase mRNA, partial cds
          Length = 1185

 Score =  416 bits (210), Expect = e-113
 Identities = 381/438 (86%)
 Strand = Plus / Minus

                                                                        
Query: 241  ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcgatt 300
            |||||||||||||| ||||||||||||| ||| ||| ||||  ||||||   |||||| |
Sbjct: 1175 ccgctgtatcctgagctgtagccactgtagccgcctctcttggttgtcctgctctcgact 1116

                                                                        
Query: 301  tcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctcgtc 360
            || || ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || 
Sbjct: 1115 tcctgggtttgttggccctcgctgcttgatgcagagggtatctggccatactcgctggtt 1056

                                                                        
Query: 361  ggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaacttc 420
            || ||||||||||| |||||||| |  | |||  | ||||| ||||||||| ||||||||
Sbjct: 1055 ggtgcgctgtattgactgctcgtatcattattgttggtaaaagccatcttcctgaacttc 996

                                                                        
Query: 421  ttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaaaag 480
            ||||||||||||||||| || |||||||||||||| || |||||||| ||||||||| ||
Sbjct: 995  ttcatgtcctcgttgtattggccagaatcatagtcagagctgctgtacgatccaaaatag 936

                                                                        
Query: 481  cggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttctaag 540
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 935  cggctgtgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttccaaa 876

                                                                        
Query: 541  gcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagca 600
            ||||| |||||||| ||||| || ||||||||||| || ||||||||||| |||||||| 
Sbjct: 875  gcccggacaacctggctcatgcgtgggcgacgacgagcggaatggcgtacgcatgcagct 816

                                                                        
Query: 601  gcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagcatcc 660
            ||||| || |||||||| || |||||||| ||||||||||||||||| || |||| ||| 
Sbjct: 815  gcacaagcaatcattctcgccatctcattgggattgaaatccttcccaagccgaggatct 756

                              
Query: 661  actagctcatcatagtta 678
            |||| ||| || ||||||
Sbjct: 755  actaactcctcgtagtta 738

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>gb|AY108241.1| Zea mays PCO134818 mRNA sequence
          Length = 1053

 Score =  385 bits (194), Expect = e-103
 Identities = 371/427 (86%), Gaps = 6/427 (1%)
 Strand = Plus / Minus

                                                                       
Query: 241 ccgctgtatcctgaactgtagccac---tgtggccacctttcttcattgtccccgtctcg 297
           |||||||||||||| ||||||||||   ||| |||||||||||||||||  |||| ||| 
Sbjct: 848 ccgctgtatcctgagctgtagccaccactgtagccacctttcttcattgcacccgactcc 789

                                                                       
Query: 298 atttcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctc 357
           || ||||| || || ||||||||||||||||||||||| |||||||| ||||| || || 
Sbjct: 788 atctcttgcgtctggtggccctcgctgcttgatgcagacggtatctgtccatattcactg 729

                                                                       
Query: 358 gtcggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaac 417
           || |||||||||||||||||||| || ||||  || || |  || |||||||||||||||
Sbjct: 728 gttggcgcgctgtattggctgctggtatagttgtt-gttg--aatgccatcttcttgaac 672

                                                                       
Query: 418 ttcttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaa 477
           ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| 
Sbjct: 671 ttcttcatgtcctcgttgtactggccagaatcgtaatcggagctgctgtatgacccaaag 612

                                                                       
Query: 478 aagcggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttct 537
           ||||||||||| ||||||||||||||||||||||| |||||||||||||| |  || || 
Sbjct: 611 aagcggctatggccaggccgaacaccttcattaaggtcctccaaagacacattgccctcc 552

                                                                       
Query: 538 aaggcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgca 597
           || |||||||| ||||||||||| || || |||||||| || ||||||||||||||||||
Sbjct: 551 aaagcccgaacgacctgactcatacgtggccgacgacgtgcagaatggcgtacacatgca 492

                                                                       
Query: 598 gcagcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagca 657
           || ||||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||| |
Sbjct: 491 gctgcacaggctatcattcttgccatctcattaggattgaagtcctttcccagccgagga 432

                  
Query: 658 tccacta 664
           |||||||
Sbjct: 431 tccacta 425

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>gb|BT016904.1| Zea mays clone Contig737 mRNA sequence
          Length = 1195

 Score =  369 bits (186), Expect = 8e-99
 Identities = 369/427 (86%), Gaps = 6/427 (1%)
 Strand = Plus / Plus

                                                                       
Query: 241 ccgctgtatcctgaactgtagccac---tgtggccacctttcttcattgtccccgtctcg 297
           |||||||||||||| ||||||||||   ||| |||||||||||||||||  |||| ||| 
Sbjct: 254 ccgctgtatcctgagctgtagccaccactgtagccacctttcttcattgcacccgactcc 313

                                                                       
Query: 298 atttcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctc 357
           || ||||| || ||  |||||||||||||||||||||| |||||||| ||||| || || 
Sbjct: 314 atctcttgcgtctgggggccctcgctgcttgatgcagacggtatctgtccatattcactg 373

                                                                       
Query: 358 gtcggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaac 417
           || |||||||||||||||||||| || ||||  || || |  || |||||||||||||||
Sbjct: 374 gttggcgcgctgtattggctgctggtatagttgtt-gttg--aatgccatcttcttgaac 430

                                                                       
Query: 418 ttcttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaa 477
           ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| 
Sbjct: 431 ttcttcatgtcctcgttgtactggccagaatcgtaatcggagctgctgtatgacccaaag 490

                                                                       
Query: 478 aagcggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttct 537
           ||||||||||| |||||||||||||||||||||||  ||||||||||||| |  || || 
Sbjct: 491 aagcggctatggccaggccgaacaccttcattaagggcctccaaagacacattgccctcc 550

                                                                       
Query: 538 aaggcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgca 597
           || |||||||| ||||||||||| || || |||||||| || ||||||||||||||||||
Sbjct: 551 aaagcccgaacgacctgactcatacgtggccgacgacgtgcagaatggcgtacacatgca 610

                                                                       
Query: 598 gcagcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagca 657
           || ||||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||| |
Sbjct: 611 gctgcacaggctatcattcttgccatctcattaggattgaagtcctttcccagccgagga 670

                  
Query: 658 tccacta 664
           |||||||
Sbjct: 671 tccacta 677

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>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012L23, complete sequence
          Length = 121659

 Score =  323 bits (163), Expect = 4e-85
 Identities = 277/315 (87%)
 Strand = Plus / Plus

                                                                         
Query: 241   ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcgatt 300
             |||||||||||||| ||||||||||||| ||| ||| ||||  ||||||   |||||| |
Sbjct: 54723 ccgctgtatcctgagctgtagccactgtagccgcctctcttggttgtcctgctctcgact 54782

                                                                         
Query: 301   tcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctcgtc 360
             || || ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || 
Sbjct: 54783 tcctgggtttgttggccctcgctgcttgatgcagagggtatctggccatactcgctggtt 54842

                                                                         
Query: 361   ggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaacttc 420
             || ||||||||||| |||||||| |  | |||  | ||||| ||||||||| ||||||||
Sbjct: 54843 ggtgcgctgtattgactgctcgtatcattattgttggtaaaagccatcttcctgaacttc 54902

                                                                         
Query: 421   ttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaaaag 480
             ||||||||||||||||| || |||||||||||||| || |||||||| ||||||||| ||
Sbjct: 54903 ttcatgtcctcgttgtattggccagaatcatagtcagagctgctgtacgatccaaaatag 54962

                                                                         
Query: 481   cggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttctaag 540
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 54963 cggctgtgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttccaaa 55022

                            
Query: 541   gcccgaacaacctga 555
             ||||| |||||||||
Sbjct: 55023 gcccggacaacctga 55037



 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                         
Query: 550   acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609
             ||||| ||||| || ||||||||||| || ||||||||||| |||||||| ||||| || 
Sbjct: 55219 acctggctcatgcgtgggcgacgacgagcggaatggcgtacgcatgcagctgcacaagca 55278

                                                                         
Query: 610   atcattctggcaatctcattaggattgaaatccttccccagacgagcatccactagctca 669
             |||||||| || |||||||| ||||||||||||||||| || |||| ||| |||| ||| 
Sbjct: 55279 atcattctcgccatctcattgggattgaaatccttcccaagccgaggatctactaactcc 55338

                      
Query: 670   tcatagtta 678
             || ||||||
Sbjct: 55339 tcgtagtta 55347



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 103   tatgaaagaatcaacaactgcagctaccagaagctatacttc 144
             ||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 54552 tatgaaagaatcaacaattgtagctaccaaaagctatacttc 54593

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  323 bits (163), Expect = 4e-85
 Identities = 277/315 (87%)
 Strand = Plus / Plus

                                                                           
Query: 241     ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcgatt 300
               |||||||||||||| ||||||||||||| ||| ||| ||||  ||||||   |||||| |
Sbjct: 7194709 ccgctgtatcctgagctgtagccactgtagccgcctctcttggttgtcctgctctcgact 7194768

                                                                           
Query: 301     tcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctcgtc 360
               || || ||||| ||||||||||||||||||||||| |||||||| ||||||||||| || 
Sbjct: 7194769 tcctgggtttgttggccctcgctgcttgatgcagagggtatctggccatactcgctggtt 7194828

                                                                           
Query: 361     ggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaacttc 420
               || ||||||||||| |||||||| |  | |||  | ||||| ||||||||| ||||||||
Sbjct: 7194829 ggtgcgctgtattgactgctcgtatcattattgttggtaaaagccatcttcctgaacttc 7194888

                                                                           
Query: 421     ttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaaaag 480
               ||||||||||||||||| || |||||||||||||| || |||||||| ||||||||| ||
Sbjct: 7194889 ttcatgtcctcgttgtattggccagaatcatagtcagagctgctgtacgatccaaaatag 7194948

                                                                           
Query: 481     cggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttctaag 540
               ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 7194949 cggctgtgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttccaaa 7195008

                              
Query: 541     gcccgaacaacctga 555
               ||||| |||||||||
Sbjct: 7195009 gcccggacaacctga 7195023



 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                           
Query: 550     acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609
               ||||| ||||| || ||||||||||| || ||||||||||| |||||||| ||||| || 
Sbjct: 7195205 acctggctcatgcgtgggcgacgacgagcggaatggcgtacgcatgcagctgcacaagca 7195264

                                                                           
Query: 610     atcattctggcaatctcattaggattgaaatccttccccagacgagcatccactagctca 669
               |||||||| || |||||||| ||||||||||||||||| || |||| ||| |||| ||| 
Sbjct: 7195265 atcattctcgccatctcattgggattgaaatccttcccaagccgaggatctactaactcc 7195324

                        
Query: 670     tcatagtta 678
               || ||||||
Sbjct: 7195325 tcgtagtta 7195333



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 103     tatgaaagaatcaacaactgcagctaccagaagctatacttc 144
               ||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 7194538 tatgaaagaatcaacaattgtagctaccaaaagctatacttc 7194579

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>gb|AY108243.1| Zea mays PCO134814 mRNA sequence
          Length = 1016

 Score =  260 bits (131), Expect = 5e-66
 Identities = 352/425 (82%), Gaps = 3/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 241 ccgctgtatcctgaactgtagccactgtggccacctttcttcattgtccccgtctcg--- 297
           ||||||||||| || |||||||| |||| |||||||||||||| ||  |||| |||    
Sbjct: 829 ccgctgtatccggagctgtagccgctgtagccacctttcttcactgcacccgactcctcc 770

                                                                       
Query: 298 atttcttgagtttgctggccctcgctgcttgatgcagatggtatctgaccatactcgctc 357
           || || || || ||  ||||||||||||||||| |||| || | ||| || || || || 
Sbjct: 769 atctcctgcgtctggcggccctcgctgcttgatccagacggcacctggccgtattcactg 710

                                                                       
Query: 358 gtcggcgcgctgtattggctgctcgtgtagtcattcgtcgtaaaggccatcttcttgaac 417
           || |||||||||||||||||||| ||||||   ||  |  | || ||| ||||| |||||
Sbjct: 709 gttggcgcgctgtattggctgctggtgtaggtgttgttattgaacgccgtcttcctgaac 650

                                                                       
Query: 418 ttcttcatgtcctcgttgtactgcccagaatcatagtcggaactgctgtatgatccaaaa 477
           |||| ||||||||||||||||||||| ||||| || || || ||||| ||||| ||||| 
Sbjct: 649 ttctgcatgtcctcgttgtactgcccggaatcgtaatcagagctgctatatgacccaaag 590

                                                                       
Query: 478 aagcggctatgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttct 537
           ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 589 aagcggctatggccaggtcgaacaccttcattaaggtcctccaaagacacgtcgccttcc 530

                                                                       
Query: 538 aaggcccgaacaacctgactcattcgagggcgacgacgggctgaatggcgtacacatgca 597
           |  |||||||| |||||||||||||| || |||||||| || ||||||||||| || |||
Sbjct: 529 agagcccgaacgacctgactcattcgtggccgacgacgtgcggaatggcgtacgcacgca 470

                                                                       
Query: 598 gcagcacatgctatcattctggcaatctcattaggattgaaatccttccccagacgagca 657
           || ||||| ||||||||||| || ||||| ||||||||||| ||||| || || |||| |
Sbjct: 469 gccgcacaggctatcattcttgccatctcgttaggattgaagtcctttccgagccgagga 410

                
Query: 658 tccac 662
           |||||
Sbjct: 409 tccac 405

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>ref|NM_188575.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1794

 Score =  117 bits (59), Expect = 5e-23
 Identities = 128/151 (84%)
 Strand = Plus / Minus

                                                                        
Query: 464  tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523
            |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| |
Sbjct: 1561 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 1502

                                                                        
Query: 524  acacgtcaccttctaaggcccgaacaacctgactcattcgagggcgacgacgggctgaat 583
            |||| || ||||| ||||||||||||||||| ||||| || ||||| || || || ||||
Sbjct: 1501 acacatcgccttccaaggcccgaacaacctggctcatccgtgggcgtcggcgtgcagaat 1442

                                           
Query: 584  ggcgtacacatgcagcagcacatgctatcat 614
            |||||||||| ||||| ||||| || |||||
Sbjct: 1441 ggcgtacacaagcagctgcacaagcaatcat 1411

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>dbj|AK103247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123K23, full
            insert sequence
          Length = 2307

 Score =  117 bits (59), Expect = 5e-23
 Identities = 128/151 (84%)
 Strand = Plus / Minus

                                                                        
Query: 464  tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523
            |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| |
Sbjct: 1843 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 1784

                                                                        
Query: 524  acacgtcaccttctaaggcccgaacaacctgactcattcgagggcgacgacgggctgaat 583
            |||| || ||||| ||||||||||||||||| ||||| || ||||| || || || ||||
Sbjct: 1783 acacatcgccttccaaggcccgaacaacctggctcatccgtgggcgtcggcgtgcagaat 1724

                                           
Query: 584  ggcgtacacatgcagcagcacatgctatcat 614
            |||||||||| ||||| ||||| || |||||
Sbjct: 1723 ggcgtacacaagcagctgcacaagcaatcat 1693

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                           
Query: 464     tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523
               |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| |
Sbjct: 7041461 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 7041402

                                              
Query: 524     acacgtcaccttctaaggcccgaacaacctg 554
               |||| || ||||| |||||||||||||||||
Sbjct: 7041401 acacatcgccttccaaggcccgaacaacctg 7041371



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                           
Query: 550     acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609
               ||||| ||||| || ||||| || || || |||||||||||||| ||||| ||||| || 
Sbjct: 7041136 acctggctcatccgtgggcgtcggcgtgcagaatggcgtacacaagcagctgcacaagca 7041077

                    
Query: 610     atcat 614
               |||||
Sbjct: 7041076 atcat 7041072

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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                         
Query: 464   tgtatgatccaaaaaagcggctatgaccaggccgaacaccttcattaagatcctccaaag 523
             |||||||||| || || |||||||| ||||| ||||||||||| || ||||| ||||| |
Sbjct: 29041 tgtatgatcccaagaatcggctatggccaggacgaacaccttcgttcagatcatccaatg 28982

                                            
Query: 524   acacgtcaccttctaaggcccgaacaacctg 554
             |||| || ||||| |||||||||||||||||
Sbjct: 28981 acacatcgccttccaaggcccgaacaacctg 28951



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 550   acctgactcattcgagggcgacgacgggctgaatggcgtacacatgcagcagcacatgct 609
             ||||| ||||| || ||||| || || || |||||||||||||| ||||| ||||| || 
Sbjct: 28716 acctggctcatccgtgggcgtcggcgtgcagaatggcgtacacaagcagctgcacaagca 28657

                  
Query: 610   atcat 614
             |||||
Sbjct: 28656 atcat 28652

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>dbj|AB110953.1| Nicotiana tabacum NtPERK1 mRNA for PERK1-like protein kinase,
           partial cds
          Length = 1083

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 84/104 (80%)
 Strand = Plus / Minus

                                                                       
Query: 502 ccttcattaagatcctccaaagacacgtcaccttctaaggcccgaacaacctgactcatt 561
           ||||||||||||||   ||| |||||||| ||||| |  || |  |||||||||||||| 
Sbjct: 555 ccttcattaagatcggacaatgacacgtctccttccagagctctgacaacctgactcatg 496

                                                       
Query: 562 cgagggcgacgacgggctgaatggcgtacacatgcagcagcaca 605
           || || ||||| |  |||||||| || ||||| |||||||||||
Sbjct: 495 cgtggtcgacgccttgctgaatgacggacacaagcagcagcaca 452

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 349     tactcgctcgtcggcgcgctg 369
               |||||||||||||||||||||
Sbjct: 2589221 tactcgctcgtcggcgcgctg 2589201

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>gb|BC075486.1| Xenopus tropicalis MGC89323 protein, mRNA (cDNA clone MGC:89323
           IMAGE:6987428), complete cds
          Length = 4299

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 502 ccttcattaagatcctccaaa 522
           |||||||||||||||||||||
Sbjct: 509 ccttcattaagatcctccaaa 489

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>gb|AC118755.7| Homo sapiens chromosome 17, clone RP11-55L4, complete sequence
          Length = 188765

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   gagaagtcaaaaagaagaaga 224
             |||||||||||||||||||||
Sbjct: 61998 gagaagtcaaaaagaagaaga 62018

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>gb|AC021218.9| Homo sapiens BAC clone RP11-525O1 from 7, complete sequence
          Length = 159482

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 457   gaactgctgtatgatccaaaa 477
             |||||||||||||||||||||
Sbjct: 63366 gaactgctgtatgatccaaaa 63386

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>ref|XM_689578.1| PREDICTED: Danio rerio similar to regulatory factor X, 5 (influences
            HLA class II expression) (LOC566305), mRNA
          Length = 4458

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 109  agaatcaacaactgcagctaccaga 133
            ||||||||||||||||||| |||||
Sbjct: 3857 agaatcaacaactgcagcttccaga 3881

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 349      tactcgctcgtcggcgcgctg 369
                |||||||||||||||||||||
Sbjct: 19939056 tactcgctcgtcggcgcgctg 19939036

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>ref|NM_001004970.1| Xenopus tropicalis MGC89323 protein (MGC89323), mRNA
          Length = 4299

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 502 ccttcattaagatcctccaaa 522
           |||||||||||||||||||||
Sbjct: 509 ccttcattaagatcctccaaa 489

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>gb|AC087501.16| Homo sapiens chromosome 17, clone RP11-565F19, complete sequence
          Length = 192197

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   gagaagtcaaaaagaagaaga 224
             |||||||||||||||||||||
Sbjct: 36127 gagaagtcaaaaagaagaaga 36147

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>dbj|AK099395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J11, full
           insert sequence
          Length = 1857

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 349 tactcgctcgtcggcgcgctg 369
           |||||||||||||||||||||
Sbjct: 270 tactcgctcgtcggcgcgctg 290

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>dbj|AK061613.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B07, full
           insert sequence
          Length = 1729

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 349 tactcgctcgtcggcgcgctg 369
           |||||||||||||||||||||
Sbjct: 264 tactcgctcgtcggcgcgctg 284

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 349      tactcgctcgtcggcgcgctg 369
                |||||||||||||||||||||
Sbjct: 19865270 tactcgctcgtcggcgcgctg 19865250

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>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 165433

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 349   tactcgctcgtcggcgcgctg 369
             |||||||||||||||||||||
Sbjct: 88204 tactcgctcgtcggcgcgctg 88224

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>gb|AC107760.9| Mus musculus chromosome 15, clone RP23-189K4, complete sequence
          Length = 178900

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gaaagaatcaacaactgcag 125
             ||||||||||||||||||||
Sbjct: 41126 gaaagaatcaacaactgcag 41107

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>ref|XM_322897.1| Neurospora crassa OR74A hypothetical protein (NCU03596.1) partial
           mRNA
          Length = 1230

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 416 acttcttcatgtcctcgttg 435
           ||||||||||||||||||||
Sbjct: 724 acttcttcatgtcctcgttg 705

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>ref|XM_956230.1| Neurospora crassa OR74A hypothetical protein (NCU03596.1) partial
           mRNA
          Length = 1230

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 416 acttcttcatgtcctcgttg 435
           ||||||||||||||||||||
Sbjct: 724 acttcttcatgtcctcgttg 705

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>gb|AC124179.4| Mus musculus chromosome 12 clone RP23-198B21, complete sequence
          Length = 192472

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    cttgaacttcttcatgtcct 430
              ||||||||||||||||||||
Sbjct: 160274 cttgaacttcttcatgtcct 160255

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 532     ccttctaaggcccgaacaacctga 555
               ||||| ||||||||||||||||||
Sbjct: 2124190 ccttcgaaggcccgaacaacctga 2124213

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>emb|AJ853849.1| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AWN gene, AQN-1 gene,
             PSP-II gene, PSP-I gene, AQN-3 gene and C10ORF120 gene
          Length = 270148

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   ggaactgctgtatgatccaa 475
             ||||||||||||||||||||
Sbjct: 59516 ggaactgctgtatgatccaa 59535

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>gb|AY426331.1| Oncorhynchus mykiss nonfunctional transposase mRNA, partial
           sequence
          Length = 282

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 404 ccatcttcttgaacttcttc 423
           ||||||||||||||||||||
Sbjct: 28  ccatcttcttgaacttcttc 9

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>gb|AC121968.3| Mus musculus BAC clone RP24-272N4 from chromosome 6, complete sequence
          Length = 193207

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aacatatgaaagaatcaaca 118
              ||||||||||||||||||||
Sbjct: 140898 aacatatgaaagaatcaaca 140917

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>gb|AC123940.4| Mus musculus BAC clone RP23-440M11 from chromosome 12, complete
             sequence
          Length = 197665

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   cttgaacttcttcatgtcct 430
             ||||||||||||||||||||
Sbjct: 22536 cttgaacttcttcatgtcct 22517

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>gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, complete sequence
          Length = 218109

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   gaaagaatcaacaactgcag 125
             ||||||||||||||||||||
Sbjct: 58692 gaaagaatcaacaactgcag 58711

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>gb|U80439.1| Caenorhabditis elegans cosmid C01G8, complete sequence
          Length = 38487

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 621   aatctcattaggattgaaat 640
             ||||||||||||||||||||
Sbjct: 37480 aatctcattaggattgaaat 37461

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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 493    ggccgaacaccttcattaagatcc 516
              |||||||||||||||| |||||||
Sbjct: 250285 ggccgaacaccttcatcaagatcc 250308

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>emb|AL670005.1|NCB11H24 Neurospora crassa DNA linkage group V BAC clone B11H24
          Length = 72580

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 416  acttcttcatgtcctcgttg 435
            ||||||||||||||||||||
Sbjct: 6679 acttcttcatgtcctcgttg 6698

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>gb|AC026798.5| Homo sapiens chromosome 5 clone CTD-2312P21, complete sequence
          Length = 121309

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   gtctcgatttcttgagtttg 311
             ||||||||||||||||||||
Sbjct: 82597 gtctcgatttcttgagtttg 82578

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>dbj|AK089707.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830009N16 product:unclassifiable, full
           insert sequence
          Length = 2570

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gaaagaatcaacaactgcag 125
           ||||||||||||||||||||
Sbjct: 769 gaaagaatcaacaactgcag 750

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>dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, map 22, complete
              sequences
          Length = 213585

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     caacaacatatgaaagaatc 114
              ||||||||||||||||||||
Sbjct: 101412 caacaacatatgaaagaatc 101431

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>dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, section 31/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    caacaacatatgaaagaatc 114
             ||||||||||||||||||||
Sbjct: 44158 caacaacatatgaaagaatc 44177

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 353     cgctcgtcggcgcgctgtat 372
               ||||||||||||||||||||
Sbjct: 2816421 cgctcgtcggcgcgctgtat 2816402

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>emb|AL929585.11| Mouse DNA sequence from clone RP23-97O7 on chromosome 4, complete
              sequence
          Length = 246011

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 434    tgtactgcccagaatcatagtcggaact 461
              |||||||||||||| ||||||| |||||
Sbjct: 202358 tgtactgcccagaagcatagtcagaact 202385

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>dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B658E16,
             LL56-APP region, complete sequence
          Length = 140249

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    caacaacatatgaaagaatc 114
             ||||||||||||||||||||
Sbjct: 72963 caacaacatatgaaagaatc 72982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,914,668
Number of Sequences: 3902068
Number of extensions: 5914668
Number of successful extensions: 104333
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103965
Number of HSP's gapped (non-prelim): 362
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result