ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags18f20 |
|---|---|
| Clone Library Name | barley_pub |
>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (RNP21.4) Length = 201 Score = 60.1 bits (144), Expect = 4e-09 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYS 396 V++ D+ G D ++S K+ F G ++FCF+N+ + + + F + +G Sbjct: 59 VEITGPDNKGIYKGDR--ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 + H + L E I +L A+ ++ EQ ++E + +N+N + R + + FE Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176 Query: 215 SAALITASVIQVYLLRRLFE 156 + L+ ++ Q+Y L+R FE Sbjct: 177 ALVLVAMTLGQIYYLKRFFE 196
>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (Sid 394) Length = 201 Score = 60.1 bits (144), Expect = 4e-09 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYS 396 V++ D+ G D ++S K+ F G ++FCF+N+ + + + F + +G Sbjct: 59 VEITGPDNKGIYKGDR--ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 + H + L E I +L A+ ++ EQ ++E + +N+N + R + + FE Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176 Query: 215 SAALITASVIQVYLLRRLFE 156 + L+ ++ Q+Y L+R FE Sbjct: 177 ALVLVAMTLGQIYYLKRFFE 196
>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) Length = 201 Score = 60.1 bits (144), Expect = 4e-09 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYS 396 V++ D+ G D ++S K+ F G ++FCF+N+ + + + F + +G Sbjct: 59 VEITGPDNKGIYKGDR--ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 + H + L E I +L A+ ++ EQ ++E + +N+N + R + + FE Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176 Query: 215 SAALITASVIQVYLLRRLFE 156 + L+ ++ Q+Y L+R FE Sbjct: 177 ALVLVAMTLGQIYYLKRFFE 196
>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor| (COPI-coated vesicle membrane protein p24) (Fragment) Length = 196 Score = 60.1 bits (144), Expect = 4e-09 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYS 396 V++ D+ G D ++S K+ F G ++FCF+N+ + + + F + +G Sbjct: 54 VEITGPDNKGIYKGDR--ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 111 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 + H + L E I +L A+ ++ EQ ++E + +N+N + R + + FE Sbjct: 112 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 171 Query: 215 SAALITASVIQVYLLRRLFE 156 + L+ ++ Q+Y L+R FE Sbjct: 172 ALVLVAMTLGQIYYLKRFFE 191
>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor| Length = 203 Score = 58.9 bits (141), Expect = 1e-08 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 8/146 (5%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK----SPYHETIDFDVHVGH 402 +D+ + + ++ ++S KF F GV+ +CF NK +P ++ H Sbjct: 55 IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPH 114 Query: 401 Y----SYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAI 234 + +Q A D + L E + +L AL +++ EQ ++E + +NEN + R + Sbjct: 115 QQAPGAAANQDAADN--AKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVV 172 Query: 233 HKALFESAALITASVIQVYLLRRLFE 156 A FE+ L+ +V Q++ L+R FE Sbjct: 173 MWAAFEAFVLVGMTVGQIFYLKRFFE 198
>TMED7_HUMAN (Q9Y3B3) Transmembrane emp24 domain-containing protein 7 precursor| Length = 224 Score = 55.1 bits (131), Expect = 1e-07 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGH-Y 399 VD ++D +G + K D F F K G ++FCF+N+ + H+T+ FD VG Sbjct: 73 VDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDP 132 Query: 398 SYFDQHAKDEHFSPLFEQIAKLDEALYN-IQFEQHW--LEAQTDRQAILNENMSRRAIHK 228 F + + + + EAL + I ++ H+ EAQ +A E+++ R + Sbjct: 133 PLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRA---EDLNTRVAYW 189 Query: 227 ALFESAALITASVIQVYLLRRLF-ERKLGTSRV 132 ++ E+ L+ S+ QV+LL+ F +++ T+RV Sbjct: 190 SVGEALILLVVSIGQVFLLKSFFSDKRTTTTRV 222
>TMED3_MOUSE (Q78IS1) Transmembrane emp24 domain-containing protein 3 precursor| Length = 221 Score = 52.0 bits (123), Expect = 1e-06 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 4/149 (2%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYS 396 VD V+D G + K D F + + +GV+RFCF+N+ + H+T+ FD VG Sbjct: 69 VDCYVEDPRGNVIYRETKKQYDSFTYKTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEP 128 Query: 395 YF--DQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKAL 222 D + + + + EAL + Q + + E+++ R + ++ Sbjct: 129 PILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSV 188 Query: 221 FESAALITASVIQVYLLRRLFERKLGTSR 135 E+ AL S QV LL+ F K +R Sbjct: 189 GETIALFVVSFSQVLLLKSFFTEKRPVNR 217
>TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 51.2 bits (121), Expect = 2e-06 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -1 Query: 563 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 396 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 +++ AK E PL ++ +L++ +I + ++E + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFS 193 Query: 215 SAALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMED3_HUMAN (Q9Y3Q3) Transmembrane emp24 domain-containing protein 3 precursor| (Membrane protein p24B) Length = 217 Score = 51.2 bits (121), Expect = 2e-06 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 4/149 (2%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYS 396 VD V+D G + K D F + + +GV++FCF+N+ + H+T+ FD VG Sbjct: 65 VDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEP 124 Query: 395 YF--DQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKAL 222 D + + + + EAL + Q + + E+++ R + ++ Sbjct: 125 PILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSV 184 Query: 221 FESAALITASVIQVYLLRRLFERKLGTSR 135 E+ AL S QV LL+ F K SR Sbjct: 185 GETIALFVVSFSQVLLLKSFFTEKRPISR 213
>TMED3_RAT (Q6AY25) Transmembrane emp24 domain-containing protein 3 precursor| Length = 221 Score = 50.1 bits (118), Expect = 4e-06 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 4/149 (2%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYS 396 VD V+D G + K D F + + +GV+RFCF+N+ + H+T+ FD VG Sbjct: 69 VDCYVEDPMGNIIYRETKKQYDSFTYKTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEP 128 Query: 395 YF--DQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKAL 222 D + + + + EAL + Q + + E+++ R + ++ Sbjct: 129 PILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSV 188 Query: 221 FESAALITASVIQVYLLRRLFERKLGTSR 135 E+ AL S QV LL+ F K +R Sbjct: 189 GETIALFVVSFSQVLLLKSFFTEKRPINR 217
>TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (p24delta) (S31III125) (S31I125) (Tmp-21-I) Length = 219 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -1 Query: 563 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 396 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 215 SAALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -1 Query: 563 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 396 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 215 SAALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (S31III125) Length = 213 Score = 49.7 bits (117), Expect = 6e-06 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Frame = -1 Query: 557 VKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYSYF 390 + DS+ + D T KF F + + CF +K + ++ D+ G + Sbjct: 70 ITDSSSHTLYSKEDATKGKFAFTTEDYDMFEVCFESKCTGRVPDQLVNLDMKHGVEAKNY 129 Query: 389 DQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESA 210 ++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 130 EEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMF 189 Query: 209 ALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 190 CLIGLATWQVFYLRRFFKAK 209
>TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 kDa| transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 49.3 bits (116), Expect = 8e-06 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -1 Query: 563 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 396 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 215 SAALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 194 MLCLIGLATWQVFYLRRFFKAK 215
>TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -1 Query: 563 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 396 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 215 SAALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -1 Query: 563 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 396 L + DS G + D T KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 215 SAALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Frame = -1 Query: 563 LVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYH---ETIDFDVHVG-HYS 396 L + DS G + D + KF F + + CF +K + + D+ G Sbjct: 74 LKITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133 Query: 395 YFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFE 216 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193 Query: 215 SAALITASVIQVYLLRRLFERK 150 LI + QV+ LRR F+ K Sbjct: 194 MFCLIGLATWQVFYLRRFFKAK 215
>EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa endomembrane| protein) (Basic 24 kDa late endocytic intermediate component) Length = 203 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/122 (23%), Positives = 55/122 (45%) Frame = -1 Query: 521 RDKTSDKFEFIVQKRGVHRFCFTNKSPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQI 342 RD + + +G ++CF N++ ET D ++ Y D D + + L + Sbjct: 79 RDTSHGEITLSAPYKGHFQYCFLNENTGIETKDVTFNIHGVVYVD--LDDPNTNTLDSAV 136 Query: 341 AKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITASVIQVYLLRRL 162 KL + ++ EQ ++ + E+ + R ++F+ +I S+ Q+Y LRR Sbjct: 137 RKLSKLTREVKDEQSYIVIRERTHRNTAESTNDRVKWWSIFQLGVVIANSLFQIYYLRRF 196 Query: 161 FE 156 FE Sbjct: 197 FE 198
>UVRA_HELPY (P56474) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 935 Score = 37.0 bits (84), Expect = 0.039 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -1 Query: 344 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 183 + +LDE ++ + ++H +EA DR + NEN SR AI KAL ES + ++Q Sbjct: 183 MVRLDEEIHLHKTKKHTIEAVVDRVVVNNENASRIASAIEKALKESYGELEVEILQ 238
>YE98_SCHPO (O13770) Hypothetical protein C17A5.08 precursor| Length = 210 Score = 37.0 bits (84), Expect = 0.039 Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 6/145 (4%) Frame = -1 Query: 569 VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK-SPYHETI-----DFDVHV 408 VD ++K + V + + F ++++G + FCF N S + + I + + Sbjct: 60 VDYMIKAPSQKTVALGKKRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENEL 119 Query: 407 GHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHK 228 + AKD + + ++ AL I Q++ + + R ++ R Sbjct: 120 SLPALTRDEAKDYKKDSMQSTVLEISTALSEIDRVQNYFKTREHRNYSTVKSTQARIFWF 179 Query: 227 ALFESAALITASVIQVYLLRRLFER 153 +L ES ++ S +QV++++ F+R Sbjct: 180 SLAESIMVVALSALQVFIVKTFFKR 204
>ERP5_YEAST (P38819) Protein ERP5 precursor| Length = 212 Score = 35.4 bits (80), Expect = 0.11 Identities = 27/135 (20%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Frame = -1 Query: 545 NGAQVRDSRDKTSDKFEFIVQKRGVHRFCFT---NKSPYHETIDFDVHVGHYSYFDQHAK 375 N +V + ++ + F G HRFCFT +K + ++ +G+ D K Sbjct: 76 NDHRVLNQKNSHTGDVTFTALDTGEHRFCFTPFYSKKSATLRVFIELEIGNVEALDS-KK 134 Query: 374 DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITA 195 E + L ++ +L + L +I+ EQ + + +E+ + + + ++F+ L+ Sbjct: 135 KEDMNSLKGRVGQLTQRLSSIRKEQDAIREKEAEFRNQSESANSKIMTWSVFQLLILLGT 194 Query: 194 SVIQVYLLRRLFERK 150 Q+ L+ F ++ Sbjct: 195 CAFQLRYLKNFFVKQ 209
>UVRA_HELPJ (Q9ZLD6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 941 Score = 35.0 bits (79), Expect = 0.15 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -1 Query: 344 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 183 + +LDE ++ + ++H +EA DR I +EN SR A+ KAL ES + ++Q Sbjct: 189 MVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAVEKALKESYGELEVEILQ 244
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 31.2 bits (69), Expect = 2.2 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = -1 Query: 449 KSPYHETIDFDVHVG------HYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLE 288 +S +E +F H+G H + + K +H L E I + + IQ +WLE Sbjct: 5131 ESKRYERTEFAEHLGEMNRQWHRVHGMLNRKIQHLEQLLESITESEN---KIQILNNWLE 5187 Query: 287 AQTDRQAILNENMSRRAIHKALFE 216 AQ +R L + S ++ K L + Sbjct: 5188 AQEERLKTLQKPESVISVQKLLLD 5211
>POXB_ECOLI (P07003) Pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) (Pyruvate| oxidase) (POX) (Pyruvate dehydrogenase [Ubiquinone]) [Contains: Alpha-peptide] Length = 572 Score = 30.8 bits (68), Expect = 2.8 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = -3 Query: 297 LARGPNRPASNIEREHEQEGHPQGTFRVGCAHYSQRHSSLSATPTLRAQA 148 LA + P+S I + QE HPQ FR C+HY + SS P + A A Sbjct: 96 LAIAAHIPSSEIGSGYFQETHPQELFR-ECSHYCELVSSPEQIPQVLAIA 144
>MDHC_PIG (P11708) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 332 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 502 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTV 226
>MDHC_HUMAN (P40925) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.4 bits (67), Expect = 3.7 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 332 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 502 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTV 226
>MDHC_BOVIN (Q3T145) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.4 bits (67), Expect = 3.7 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 332 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 502 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MDHC_RAT (O88989) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 332 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 502 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MDHC_MOUSE (P14152) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 332 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 502 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MDHC_FELCA (Q7YRU4) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 332 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 502 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKVKLHGKEVGVYDALKDDSWLKGEFITTV 226
>MTMRD_XENLA (Q6NTN5) Myotubularin-related protein 13 (SET-binding factor 2)| Length = 1873 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = +2 Query: 218 RKVPCGWPSCSCSRSILLAGRFGPLASAAQTECCKVLHLTLQFVQTKVKNVHLWHADQ-- 391 R + C CS S +A + PLA+A C K+ QF T V++ +W Q Sbjct: 613 RMMNCALQDCSGSEEYTIASQLLPLATAF---CRKLSAAVSQFAYTCVQDHGVWANQQFW 669 Query: 392 ---NTNNVQHARRSLW 430 N+VQ+ RSL+ Sbjct: 670 ETTFYNDVQNQVRSLY 685
>GAB1_HUMAN (Q13480) GRB2-associated-binding protein 1 (GRB2-associated binder| 1) Length = 694 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Frame = -2 Query: 238 PSTRHFSSRLRSLQPASFKSICYADSSSASWG-------HLGSDATSKTPPHRPLEAVTL 80 P +H SS +Q A++ + +S+G H+G ++ KTPP RP+ Sbjct: 455 PPRQHSSSFTEPIQEANYVPMTPGTFDFSSFGMQVPPPAHMGFRSSPKTPPRRPVPVA-- 512 Query: 79 NCAP 68 +C P Sbjct: 513 DCEP 516
>TMED5_PONPY (Q5R809) Transmembrane emp24 domain-containing protein 5 precursor| Length = 229 Score = 29.3 bits (64), Expect = 8.2 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 14/136 (10%) Frame = -1 Query: 515 KTSDKFEFIVQKRGVHRFCFTN--KSPYHETIDFDV---HVGHYSYFDQHAK-------- 375 + SD + + G + FCF N + + I F++ ++G + + K Sbjct: 89 RKSDGVHTVETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGTDM 148 Query: 374 -DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALIT 198 D + E I + L Q L A R + E+ R ++ ++ Sbjct: 149 LDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVV 208 Query: 197 ASVIQVYLLRRLFERK 150 S IQVY+L+ LFE K Sbjct: 209 VSAIQVYMLKSLFEDK 224
>TMED5_HUMAN (Q9Y3A6) Transmembrane emp24 domain-containing protein 5 precursor| Length = 229 Score = 29.3 bits (64), Expect = 8.2 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 14/136 (10%) Frame = -1 Query: 515 KTSDKFEFIVQKRGVHRFCFTN--KSPYHETIDFDV---HVGHYSYFDQHAK-------- 375 + SD + + G + FCF N + + I F++ ++G + + K Sbjct: 89 RKSDGVHTVETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGTDI 148 Query: 374 -DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALIT 198 D + E I + L Q L A R + E+ R ++ ++ Sbjct: 149 LDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVV 208 Query: 197 ASVIQVYLLRRLFERK 150 S IQVY+L+ LFE K Sbjct: 209 VSAIQVYMLKSLFEDK 224 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,667,989 Number of Sequences: 219361 Number of extensions: 1576542 Number of successful extensions: 4233 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 4130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4230 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
