>gb|BT009309.1| Triticum aestivum clone wlm1.pk0020.e5:fis, full insert mRNA sequence
          Length = 1498

 Score =  250 bits (126), Expect = 2e-63
 Identities = 225/256 (87%), Gaps = 17/256 (6%)
 Strand = Plus / Minus

                                                                        
Query: 81   aagcaagcactagtagctactactgcagtagtcataaccatcaagcaacaaccttctttt 140
            ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 1364 aagcaagcactagtagctactactgtagtagtcataagcatcaagcaacaaccttcttct 1305

                                                                        
Query: 141  catcttatt---acctcttacacaaagactgttggctgacttctcttccatcccggtcg- 196
             ||||| ||   |||||||||||||||||||  ||||    |||||||| |  |||||| 
Sbjct: 1304 tatcttcttcttacctcttacacaaagactgccggct----tctcttccgttacggtcgc 1249

                                                                        
Query: 197  -gncgcaagccatcgtcatcctnctccagccacctcaaacagtcgtcgtccacgcacaca 255
             | ||||||||||||||   || |||||||||||||||||||| ||||||||||||||||
Sbjct: 1248 ggtcgcaagccatcgtc---ctcctccagccacctcaaacagttgtcgtccacgcacaca 1192

                                                                        
Query: 256  gacaccagcgagagattggcggtggcttagccatcagtcatcttctaggtttgaattgat 315
            ||||||||||||||||||||||||||||||||||||||||||| ||||||     |||||
Sbjct: 1191 gacaccagcgagagattggcggtggcttagccatcagtcatctcctaggt-----ttgat 1137

                            
Query: 316  gcaagaataataatgc 331
            ||||||||||||||||
Sbjct: 1136 gcaagaataataatgc 1121



 Score =  109 bits (55), Expect = 6e-21
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                   
Query: 8    tacatccgtctacacagcagcttaatacaacaccatcatcaatccacgtggcaca 62
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 tacatccgtctacacagcagcttaatacaacaccatcatcaatccacgtggcaca 1381

>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two
             novel genes (FLJ36774) and five CpG islands, complete
             sequence
          Length = 158335

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 78    acaaagcaagcactagtagcta 99
             ||||||||||||||||||||||
Sbjct: 59436 acaaagcaagcactagtagcta 59457

>ref|NM_106299.3| Arabidopsis thaliana HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA
           REDUCTASE) AT1G76490 (HMG1) mRNA, complete cds
          Length = 2557

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agtagtcataaccatcaagcaacaa 131
           |||| ||||||||||||||||||||
Sbjct: 963 agtactcataaccatcaagcaacaa 939

>gb|AY488113.1| Arabidopsis thaliana 3-hydroxy-3-methylglutaryl coenzyme A
           reductase isoform 1L (HMG1) mRNA, complete cds
          Length = 2342

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agtagtcataaccatcaagcaacaa 131
           |||| ||||||||||||||||||||
Sbjct: 963 agtactcataaccatcaagcaacaa 939

>gb|BT010468.1| Arabidopsis thaliana At1g76490/F15M4.1 gene, complete cds
          Length = 1779

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agtagtcataaccatcaagcaacaa 131
           |||| ||||||||||||||||||||
Sbjct: 772 agtactcataaccatcaagcaacaa 748

>gb|BT000703.1| Arabidopsis thaliana clone RAFL07-08-D22 (R10818) putative
           3-hydroxy-3-methylglutaryl CoA reductase (At1g76490)
           mRNA, complete cds
          Length = 2346

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agtagtcataaccatcaagcaacaa 131
           |||| ||||||||||||||||||||
Sbjct: 806 agtactcataaccatcaagcaacaa 782

>emb|X15032.1|ATHMGCOA Arabidopsis thaliana mRNA for 3-hydroxy-3-methylglutaryl CoA
           reductase (EC 1.1.1.34)
          Length = 2385

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agtagtcataaccatcaagcaacaa 131
           |||| ||||||||||||||||||||
Sbjct: 842 agtactcataaccatcaagcaacaa 818

>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete
             sequence
          Length = 100806

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 107   agtagtcataaccatcaagcaacaa 131
             |||| ||||||||||||||||||||
Sbjct: 33024 agtactcataaccatcaagcaacaa 33000

>gb|AF385690.1|AF385690 Arabidopsis thaliana At1g76490/F15M4.1 mRNA, complete cds
          Length = 2152

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agtagtcataaccatcaagcaacaa 131
           |||| ||||||||||||||||||||
Sbjct: 842 agtactcataaccatcaagcaacaa 818

>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence,
            complete sequence
          Length = 94487

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 107  agtagtcataaccatcaagcaacaa 131
            |||| ||||||||||||||||||||
Sbjct: 8739 agtactcataaccatcaagcaacaa 8763

>gb|J04537.1|ATHHMG1 Arabidopsis thaliana HMG-CoA reductase (HMG1) mRNA, complete cds
          Length = 2195

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 agtagtcataaccatcaagcaacaa 131
           |||| ||||||||||||||||||||
Sbjct: 847 agtactcataaccatcaagcaacaa 823

>gb|L19261.1|ATHHMGCOAR Arabidopsis thaliana HMG-cOA reductase gene, complete cds
          Length = 3716

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 107  agtagtcataaccatcaagcaacaa 131
            |||| ||||||||||||||||||||
Sbjct: 1272 agtactcataaccatcaagcaacaa 1248

>ref|XM_640462.1| Dictyostelium discoideum hypothetical protein (DDB0216866), partial
            mRNA
          Length = 5217

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  atcttctaggtttgaattga 314
            ||||||||||||||||||||
Sbjct: 4806 atcttctaggtttgaattga 4787

>emb|AL954219.1| Pan troglodytes chromosome 22 clone PTB-302M06 map q21.2, complete
              sequence
          Length = 128963

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    aattgatgcaagaataataa 328
              ||||||||||||||||||||
Sbjct: 121999 aattgatgcaagaataataa 122018

>emb|AL031782.1|HS708F5 Human DNA sequence from clone RP4-708F5 on chromosome 6p11.2-12.3
             Contains part of the COL21A1 gene for collagen, type XXI,
             alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L,
             COL20A1, DKFZp564B052), complete sequence
          Length = 126501

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    acacagcagcttaatacaacacca 42
             |||||||||||||| |||||||||
Sbjct: 22045 acacagcagcttaaaacaacacca 22068

>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aatacaacaccatcatcaat 50
             ||||||||||||||||||||
Sbjct: 95929 aatacaacaccatcatcaat 95948

>gb|BC108089.1| Bos taurus cDNA clone MGC:126986 IMAGE:7898109, complete cds
          Length = 4149

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 agccatcagtcatcttctag 303
           ||||||||||||||||||||
Sbjct: 771 agccatcagtcatcttctag 790

>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aatacaacaccatcatcaat 50
              ||||||||||||||||||||
Sbjct: 120304 aatacaacaccatcatcaat 120323

>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete
              cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     acacagcagcttaatacaacacca 42
              |||||||||||||| |||||||||
Sbjct: 255277 acacagcagcttaaaacaacacca 255254

>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aatacaacaccatcatcaat 50
              ||||||||||||||||||||
Sbjct: 105058 aatacaacaccatcatcaat 105077

>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aatacaacaccatcatcaat 50
             ||||||||||||||||||||
Sbjct: 71123 aatacaacaccatcatcaat 71142

>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aatacaacaccatcatcaat 50
              ||||||||||||||||||||
Sbjct: 125861 aatacaacaccatcatcaat 125880

>dbj|AP001732.1| Homo sapiens genomic DNA, chromosome 21q, section 76/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   aattgatgcaagaataataa 328
             ||||||||||||||||||||
Sbjct: 84287 aattgatgcaagaataataa 84306

>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4,
             complete sequence
          Length = 256879

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   atcttctaggtttgaattga 314
             ||||||||||||||||||||
Sbjct: 45642 atcttctaggtttgaattga 45661

>gb|AC025949.4| Staphylococcus aureus clone sabac-114, complete sequence
          Length = 28142

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   aatacaacaccatcatcaat 50
            ||||||||||||||||||||
Sbjct: 7922 aatacaacaccatcatcaat 7903

>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome,
             strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aatacaacaccatcatcaat 50
             ||||||||||||||||||||
Sbjct: 97223 aatacaacaccatcatcaat 97242

>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aatacaacaccatcatcaat 50
              ||||||||||||||||||||
Sbjct: 120343 aatacaacaccatcatcaat 120362

>dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, map 22, complete
             sequences
          Length = 171187

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   aagactgttggctgacttct 181
             ||||||||||||||||||||
Sbjct: 96834 aagactgttggctgacttct 96815

>emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 map q21.2, complete
             sequence
          Length = 169077

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   aattgatgcaagaataataa 328
             ||||||||||||||||||||
Sbjct: 27748 aattgatgcaagaataataa 27767

>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete
             sequence
          Length = 241304

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   aattgatgcaagaataataa 328
             ||||||||||||||||||||
Sbjct: 29158 aattgatgcaagaataataa 29177

>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    aagactgttggctgacttct 181
              ||||||||||||||||||||
Sbjct: 170684 aagactgttggctgacttct 170665

>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aatacaacaccatcatcaat 50
              ||||||||||||||||||||
Sbjct: 121522 aatacaacaccatcatcaat 121541

>ref|NM_001038155.1| Bos taurus similar to C-terminal tensin-like (MGC126986), mRNA
          Length = 4149

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 agccatcagtcatcttctag 303
           ||||||||||||||||||||
Sbjct: 771 agccatcagtcatcttctag 790

>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aatacaacaccatcatcaat 50
             ||||||||||||||||||||
Sbjct: 63366 aatacaacaccatcatcaat 63385

>dbj|AP001037.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2042G5, ERG-ETS2
             region, complete sequence
          Length = 165644

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   aattgatgcaagaataataa 328
             ||||||||||||||||||||
Sbjct: 71168 aattgatgcaagaataataa 71187

>dbj|AP001506.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B821M7,
            LL56-APP region, complete sequence
          Length = 28074

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  aagactgttggctgacttct 181
            ||||||||||||||||||||
Sbjct: 8827 aagactgttggctgacttct 8808


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,644,373
Number of Sequences: 3902068
Number of extensions: 2644373
Number of successful extensions: 45449
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45268
Number of HSP's gapped (non-prelim): 178
length of query: 331
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 309
effective length of database: 17,147,199,772
effective search space: 5298484729548
effective search space used: 5298484729548
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)