>YFLS_BACSU (O34726) Putative malate transporter yflS|
          Length = 478

 Score =  118 bits (296), Expect = 1e-26
 Identities = 50/106 (47%), Positives = 76/106 (71%)
 Frame = -1

Query: 681 VLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYSS 502
           +L   Y++ HY FAS TAH+ A+YSAFLA+ +AAG P +L+AL+L + SNLFG+ THY S
Sbjct: 373 ILIVVYYYSHYFFASATAHISAMYSAFLAVVVAAGAPPLLAALSLAFISNLFGSTTHYGS 432

Query: 501 GQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 364
           G + V++GAGY+     + +GF  + ++ ++W V+G  WWK LG++
Sbjct: 433 GAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLGIW 478

>SOT1_SPIOL (Q41364) 2-oxoglutarate/malate translocator, chloroplast precursor|
          Length = 569

 Score =  115 bits (287), Expect = 2e-25
 Identities = 52/107 (48%), Positives = 71/107 (66%)
 Frame = -1

Query: 684 GVLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYS 505
           GVL   YF+ HY FAS  AH+GA+++AFL++  A G P  L+A+ L++ SNL G LTHY 
Sbjct: 463 GVLVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPFLAAIVLSFLSNLMGGLTHYG 522

Query: 504 SGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 364
            G + V+YGA YV LP  +  GF  + +N +IW  VG  WWK +GL+
Sbjct: 523 IGSAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569

>YBHI_ECOLI (P75763) Inner membrane protein ybhI|
          Length = 477

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 29/95 (30%), Positives = 51/95 (53%)
 Frame = -1

Query: 657 IHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYSSGQSAVYYG 478
           + Y FAS +A++ A+   F  +   +G P +L+ALAL ++++  G +THY      V +G
Sbjct: 377 VRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFG 436

Query: 477 AGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFL 373
            GY D+   + +G     +  L+   +G +WW  L
Sbjct: 437 VGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNML 471

>Y020_HAEIN (Q57048) Hypothetical protein HI0020|
          Length = 479

 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 33/95 (34%), Positives = 49/95 (51%)
 Frame = -1

Query: 657 IHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYSSGQSAVYYG 478
           + YLFAS  A+V A+   F  +    G P  L AL L + ++  G++THY  G   + +G
Sbjct: 379 VRYLFASGGAYVAAMVPVFATVGHVTGAPTELLALGLVFANSYGGSVTHYGGGPGPIAFG 438

Query: 477 AGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFL 373
           AGY D+   +  G   A  + +I   +G  WWK L
Sbjct: 439 AGYNDIKSWWITGAIIAFGSLIIHLTIGMAWWKLL 473

>CITT_ECOLI (P0AE74) Citrate carrier (Citrate transporter) (Citrate/succinate|
           antiporter)
          Length = 487

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = -1

Query: 681 VLQASYFFIHYLFASQTAHVGALYSAFLAMHLAA-GVPAILSALALTYNSNLFGALTHYS 505
           VL   ++F HYLFAS +AH   +    LA+     GVP     + L  +  + G LT Y+
Sbjct: 383 VLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYA 442

Query: 504 SGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 364
           +G   + YG GYV   D ++LG     I   +  +VG   W  L ++
Sbjct: 443 TGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG---WPILAMW 486

>CITT_ECO57 (P0AE75) Citrate carrier (Citrate transporter) (Citrate/succinate|
           antiporter)
          Length = 487

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = -1

Query: 681 VLQASYFFIHYLFASQTAHVGALYSAFLAMHLAA-GVPAILSALALTYNSNLFGALTHYS 505
           VL   ++F HYLFAS +AH   +    LA+     GVP     + L  +  + G LT Y+
Sbjct: 383 VLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYA 442

Query: 504 SGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWKFLGLY 364
           +G   + YG GYV   D ++LG     I   +  +VG   W  L ++
Sbjct: 443 TGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG---WPILAMW 486

>TTDT_ECOLI (P39414) Putative tartrate carrier (Tartrate transporter)|
           (Tartrate/succinate antiporter)
          Length = 487

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -1

Query: 666 YFFIHYLFASQTAHVGALYSAFLAMHLAAG-VPAILSALALTYNSNLFGALTHYSSGQSA 490
           ++ + Y FAS TA+  AL    +A  LA   +P  +  L +     L   LT Y++G S 
Sbjct: 387 FYLLRYFFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSP 446

Query: 489 VYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFW 385
           +YYG+GY+   D ++LG     I  ++  + G  W
Sbjct: 447 IYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481

>Y608_HAEIN (Q57486) Hypothetical protein HI0608|
          Length = 461

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 24/102 (23%), Positives = 50/102 (49%)
 Frame = -1

Query: 687 VGVLQASYFFIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHY 508
           +G+L A++      F S TA    L   F+++  + G+P I  AL +   ++    L   
Sbjct: 359 IGLLVAAFIIFLTEFTSNTASAALLVPIFISIAQSLGMPEIGLALIIGIGASCAFMLP-V 417

Query: 507 SSGQSAVYYGAGYVDLPDVFKLGFTAAAINALIWGVVGTFWW 382
           ++  +A+ +G+G V   ++ K+GF    +  ++   +G  +W
Sbjct: 418 ATPPNAIVFGSGQVKQSEMVKVGFLLNLVCVVVIATMGYMFW 459

>TOP1_MYCPN (P78032) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 711

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
 Frame = +1

Query: 238 PLIIHFTKHLRRKMRSLRMVSHIGLSGALKNNFHQLTPEKPSI---KPQEFPPKC----- 393
           PL+  +TK    K         +G S      +++ +  KP++   K +E  P+C     
Sbjct: 630 PLLYRYTKRGNEKF--------VGCSNFPNCKYNEFSQNKPNLTLEKLEELCPECNSQLV 681

Query: 394 ---TNYSPNQSINRCCCKPQLEYIRKVNIS 474
              T ++PN++   C   P+  YI+K N S
Sbjct: 682 KRRTKFNPNKTFVGCSNFPRCRYIKKDNAS 711

>EXPR_XANCP (P23314) Extracellular protease precursor (EC 3.4.21.-)|
          Length = 580

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -1

Query: 603 FLAMHLAAGVPAILSALALTYNSNLFGALTHYSSGQSAVYYGAGYVDLPDVFKLGFTAAA 424
           + A    AG+PA  S+   T+ +    A+T+ ++G +   YGA  V +  + K G + + 
Sbjct: 220 YAANECGAGIPAASSSWHGTHVAGTVAAVTNNTTGVAGTAYGAKVVPVRVLGKCGGSLSD 279

Query: 423 I-NALIWGVVGT 391
           I +A++W   GT
Sbjct: 280 IADAIVWASGGT 291

>YKS7_YEAST (P34231) Protein YKL187C|
          Length = 750

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 23/94 (24%), Positives = 44/94 (46%)
 Frame = -1

Query: 660 FIHYLFASQTAHVGALYSAFLAMHLAAGVPAILSALALTYNSNLFGALTHYSSGQSAVYY 481
           FI  L+ ++      L+   LA+H+  GV  +L+A+ ++        +    SG +   Y
Sbjct: 562 FIILLYFNRYMFKQPLWLIALALHVCVGVATVLAAIIISV------MIAIIKSGTADDKY 615

Query: 480 GAGYVDLPDVFKLGFTAAAINALIWGVVGTFWWK 379
           G  +   P    L +TA A++ +  G++   WW+
Sbjct: 616 GVVFKAGPAYTGLIWTAFALSFIATGLIIYTWWR 649

>HXB4_CHICK (P14840) Homeobox protein Hox-B4 (Chox-Z)|
          Length = 245

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 307 GLSGALKNNFHQLTPEKPSIKPQEFPPKCTNYSPNQSINRCCCKPQLEY--IRKVNISS 477
           GL   L    H   P  PS      PP C+  S NQS +   CK  + Y  ++KV++S+
Sbjct: 87  GLQSHLSEPNHPCEPGTPSP-----PPSCSQNSLNQSPSNSSCKEPVVYPWMKKVHVST 140

>PCP2_RALSO (Q8XT56) Pyrrolidone-carboxylate peptidase 2 (EC 3.4.19.3)|
           (5-oxoprolyl-peptidase 2) (Pyroglutamyl-peptidase I 2)
           (PGP-I 2) (Pyrase 2)
          Length = 215

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 585 AAGVPAILSALALTYNSN-LFGALTHYSSGQSAVYYGAGYVDLP 457
           AAGVPA +S  A TYN N LF  L H+ + ++    G G++ +P
Sbjct: 127 AAGVPAAVSQSAGTYNCNHLFYGLMHHIATRAPRMRG-GFIHVP 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,330,897
Number of Sequences: 219361
Number of extensions: 2257515
Number of successful extensions: 5215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5213
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)