ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17p16 |
|---|---|
| Clone Library Name | barley_pub |
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 202 bits (515), Expect = 4e-52 Identities = 105/138 (76%), Positives = 112/138 (81%) Frame = -1 Query: 577 TNAAGEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRL 398 T+AAG GNLD LR NAQFR+LLSLVQANPQILQPLLQELGK QAEFL L Sbjct: 254 TDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHL 313 Query: 397 INEPXEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVXFACXKDET 218 INEP EGD++ENLL+QF E +PQTIAVTPEENEAILRLE MGFDRALVL+V FAC KDE Sbjct: 314 INEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQ 373 Query: 217 LXANYLLDHMNEFDDGAP 164 L ANYLLDHMNEFDD P Sbjct: 374 LAANYLLDHMNEFDDEGP 391
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 162 bits (410), Expect = 6e-40 Identities = 84/132 (63%), Positives = 100/132 (75%) Frame = -1 Query: 568 AGEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRLINE 389 AG GNLD LR + QF++L ++VQANPQILQP+LQELGK QA+FLRLINE Sbjct: 248 AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINE 307 Query: 388 PXEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVXFACXKDETLXA 209 P EG+E N++EQ +PQ + VTPEE EAI RLEGMGFDRA+VLEV FAC K+E L A Sbjct: 308 PVEGEE--NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAA 365 Query: 208 NYLLDHMNEFDD 173 NYLLDHM+EF+D Sbjct: 366 NYLLDHMHEFED 377
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 147 bits (370), Expect = 3e-35 Identities = 82/134 (61%), Positives = 96/134 (71%), Gaps = 3/134 (2%) Frame = -1 Query: 565 GEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRLINEP 386 G G LD LR + QF++L ++VQANPQ+LQP+LQELGK QA+FLRLINEP Sbjct: 286 GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEP 345 Query: 385 XEGD-EDENLLEQFAEGVPQ--TIAVTPEENEAILRLEGMGFDRALVLEVXFACXKDETL 215 EG E NLL Q A G+PQ I VT EE EAI RLE MGF+RALVLEV FAC K+E L Sbjct: 346 VEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEEL 405 Query: 214 XANYLLDHMNEFDD 173 ANYLLDHM+EF++ Sbjct: 406 AANYLLDHMHEFEE 419
>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)| (AtRAD23-2) Length = 368 Score = 130 bits (327), Expect = 3e-30 Identities = 70/138 (50%), Positives = 95/138 (68%), Gaps = 3/138 (2%) Frame = -1 Query: 577 TNAAGE--GNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFL 404 ++AAG G L+ LR N QF+ L S+V +NPQILQP+LQELGK QAEFL Sbjct: 231 SDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFL 290 Query: 403 RLINEPXEG-DEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVXFACXK 227 +L+NEP EG D D ++ +Q + +P ++ VTPEE E+I RLE MGFDRA+V+E +C + Sbjct: 291 QLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDR 350 Query: 226 DETLXANYLLDHMNEFDD 173 +E L ANYLL+H +F+D Sbjct: 351 NEELAANYLLEHSADFED 368
>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)| (AtRAD23-1) Length = 371 Score = 128 bits (322), Expect = 1e-29 Identities = 70/137 (51%), Positives = 92/137 (67%), Gaps = 4/137 (2%) Frame = -1 Query: 571 AAGEGNL---DVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLR 401 AAG G+L + LR N QF+ L ++V +NPQILQP+LQELGK QAEFL+ Sbjct: 235 AAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQ 294 Query: 400 LINEPXEGDEDE-NLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVXFACXKD 224 L+NEP EG + E ++ +Q + +P I VTP E EAI RLE MGFDRALV+E AC ++ Sbjct: 295 LVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRN 354 Query: 223 ETLXANYLLDHMNEFDD 173 E L ANYLL++ +F+D Sbjct: 355 EELAANYLLENSGDFED 371
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 92.8 bits (229), Expect = 6e-19 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 6/141 (4%) Frame = -1 Query: 577 TNAAGEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRL 398 T AAGE L+ LR QF+++ ++Q NP +L LLQ+LG+ Q +F+++ Sbjct: 224 TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQM 283 Query: 397 INEP----XEGDEDENLLEQFAEGVPQT--IAVTPEENEAILRLEGMGFDRALVLEVXFA 236 +NEP + + E + E PQ I VTP+E EAI RL+ +GF +LV++ FA Sbjct: 284 LNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFA 343 Query: 235 CXKDETLXANYLLDHMNEFDD 173 C K+E L AN+LL FDD Sbjct: 344 CEKNENLAANFLLS--QNFDD 362
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 92.8 bits (229), Expect = 6e-19 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 6/141 (4%) Frame = -1 Query: 577 TNAAGEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRL 398 T AAGE L+ LR QF+++ ++Q NP +L LLQ+LG+ Q +F+++ Sbjct: 224 TEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQM 283 Query: 397 INEP----XEGDEDENLLEQFAEGVPQT--IAVTPEENEAILRLEGMGFDRALVLEVXFA 236 +NEP + + E + E PQ I VTP+E EAI RL+ +GF +LV++ FA Sbjct: 284 LNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFA 343 Query: 235 CXKDETLXANYLLDHMNEFDD 173 C K+E L AN+LL FDD Sbjct: 344 CEKNENLAANFLLS--QNFDD 362
>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)| Length = 368 Score = 85.1 bits (209), Expect = 1e-16 Identities = 50/135 (37%), Positives = 74/135 (54%) Frame = -1 Query: 577 TNAAGEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRL 398 +N G+ L LR QF+ L +VQ NPQ+L+ +LQ++G+ FL+L Sbjct: 239 SNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQL 298 Query: 397 INEPXEGDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVXFACXKDET 218 + E EG+ G Q I +T EE+E+I RL +GFDR +V++ AC K+E Sbjct: 299 LAEGAEGES------ALPSGGIQ-IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEE 351 Query: 217 LXANYLLDHMNEFDD 173 L ANYL +H +E +D Sbjct: 352 LAANYLFEHGHESED 366
>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 409 Score = 83.2 bits (204), Expect = 5e-16 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 8/143 (5%) Frame = -1 Query: 577 TNAAGEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRL 398 T ++G L+ LR QF+ + ++Q NP +L LLQ++G+ Q F+++ Sbjct: 268 TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 327 Query: 397 INEPXE--------GDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVX 242 +NEP + G + + G I VTP+E EAI RL+ +GF LV++ Sbjct: 328 LNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAY 387 Query: 241 FACXKDETLXANYLLDHMNEFDD 173 FAC K+E L AN+LL FD+ Sbjct: 388 FACEKNENLAANFLL--QQNFDE 408
>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 416 Score = 79.3 bits (194), Expect = 7e-15 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 15/150 (10%) Frame = -1 Query: 577 TNAAGEGNLDVLRXNAQFRSLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRL 398 T +G L+ LR QF+ + ++Q NP +L LLQ++G+ Q F+++ Sbjct: 268 TTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 327 Query: 397 INEPXE---------------GDEDENLLEQFAEGVPQTIAVTPEENEAILRLEGMGFDR 263 +NEP + G + + G I VTP+E EAI RL+ +GF Sbjct: 328 LNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPE 387 Query: 262 ALVLEVXFACXKDETLXANYLLDHMNEFDD 173 LV++ FAC K+E L AN+LL FD+ Sbjct: 388 GLVIQAYFACEKNENLAANFLL--QQNFDE 415
>RAD23_YEAST (P32628) UV excision repair protein RAD23| Length = 398 Score = 52.8 bits (125), Expect = 7e-07 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 23/133 (17%) Frame = -1 Query: 520 SLLSLVQANPQILQPLLQELGKXXXXXXXXXXXXQAEFLRLINEPX-------------- 383 SL +V NP+ L PLL+ + F+ ++ E Sbjct: 264 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 323 Query: 382 -EGDEDENLLEQFAEGVPQ-------TIAVTPEENEAILRLEGMGFDRALVLEVXFACXK 227 EG++ E E A G+ Q + TPE+++AI RL +GF+R LV++V FAC K Sbjct: 324 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 383 Query: 226 DETLXANYLL-DH 191 +E AN L DH Sbjct: 384 NEEAAANILFSDH 396
>RIR1_HHV23 (P09853) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1144 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 340 GVPQTIAVTPEENEAILRLEGMGFDR--ALVLEVXFACXKDET 218 G P + +TPE EA+ R G DR AL+LE C ++E+ Sbjct: 318 GYPVPLELTPENAEAVARFLGDAVDREPALMLEYFCRCAREES 360
>SPRC_HUMAN (P09486) SPARC precursor (Secreted protein acidic and rich in| cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40) Length = 303 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -1 Query: 268 DRALVLEVXFACXKDETLXANYLLDHMNEFDDGAPQ*GKQVVSELHAQAHGSK 110 D V+E A + ++ AN + + EFDDGA + ++VV+E Q H K Sbjct: 26 DETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCK 78
>CCNL2_HUMAN (Q96S94) Cyclin-L2 (Paneth cell-enhanced expression protein)| Length = 520 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 172 RRQTRSCGLTGSLRXGSHPXCRQSXPPEQAPGQSPFPQDEV 294 RR++ S +G + S R PP QAP +P+ E+ Sbjct: 403 RRKSDSGSTSGGSKSQSRSRSRSDSPPRQAPRSAPYKGSEI 443
>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1137 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -1 Query: 334 PQTIAVTPEENEAILRLEGMGFDR--ALVLEVXFACXKDET 218 P + +TPE EA+ R G +R AL+LE C ++ET Sbjct: 313 PVPLELTPENAEAVARFLGDAVNREPALMLEYFCRCAREET 353
>TFEB_HUMAN (P19484) Transcription factor EB| Length = 476 Score = 29.6 bits (65), Expect = 6.4 Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 16/130 (12%) Frame = +1 Query: 127 VHVIQKQLACLTAALRRQTRSCGLTGSLRXG------SHPXCRQSXPPEQAPGQSPFPQD 288 + + KQL L Q R GL + G + +Q P E+ PG++ Sbjct: 305 LEMTNKQLWLRIQELEMQARVHGLPTTSPSGMNMAELAQQVVKQELPSEEGPGEALMLGA 364 Query: 289 EV*LHSPQE*QLWSEALPQQTALG-----DSRLHRPXLAH*LNEGTQ-----PGCPESTA 438 EV P ALP Q L S H +H L+ G + PG PE A Sbjct: 365 EVPDPEPLP------ALPPQAPLPLPTQPPSPFHHLDFSHSLSFGGREDEGPPGYPEPLA 418 Query: 439 KSXGFAFPAL 468 G FP+L Sbjct: 419 PGHGSPFPSL 428
>SPRC_BOVIN (P13213) SPARC precursor (Secreted protein acidic and rich in| cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40) Length = 304 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -1 Query: 268 DRALVLEVXFACXKDETLXANYLLDHMNEFDDGAPQ*GKQVVSELHAQAHGSK 110 D V+E A + + AN + + EFDDGA + ++VV+E Q H K Sbjct: 26 DETEVVEETVAEVAEVPVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCK 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,583,106 Number of Sequences: 219361 Number of extensions: 1177684 Number of successful extensions: 3302 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3181 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3287 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
