ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17p15 |
|---|---|
| Clone Library Name | barley_pub |
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 181 bits (460), Expect = 1e-45 Identities = 93/123 (75%), Positives = 100/123 (81%) Frame = -1 Query: 594 AQFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLE 415 AQFR+LLSLVQAN QNPQILQLIQ+NQAEFL LINEPAEGD++ENLL+ Sbjct: 269 AQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLD 328 Query: 414 QFAEGVPQTIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHMNEFDD 235 QF E +PQTIAVTPEENE ILRLE MGFDRALVL V+FACNKDE L ANYLLDHMNEFDD Sbjct: 329 QFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388 Query: 234 GAP 226 P Sbjct: 389 EGP 391
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 140 bits (352), Expect = 4e-33 Identities = 70/119 (58%), Positives = 90/119 (75%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQ 412 QF++L ++VQAN QNPQ+++LIQ++QA+FLRLINEP EG+E N++EQ Sbjct: 261 QFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE--NVMEQ 318 Query: 411 FAEGVPQTIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHMNEFDD 235 +PQ + VTPEE E I RLEGMGFDRA+VL V+FACNK+E L ANYLLDHM+EF+D Sbjct: 319 LEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 129 bits (323), Expect = 8e-30 Identities = 71/122 (58%), Positives = 87/122 (71%), Gaps = 3/122 (2%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAEGD-EDENLLE 415 QF++L ++VQAN QNP +++LIQD+QA+FLRLINEP EG E NLL Sbjct: 298 QFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 357 Query: 414 QFAEGVPQ--TIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHMNEF 241 Q A G+PQ I VT EE E I RLE MGF+RALVL V+FACNK+E L ANYLLDHM+EF Sbjct: 358 QMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEF 417 Query: 240 DD 235 ++ Sbjct: 418 EE 419
>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)| (AtRAD23-2) Length = 368 Score = 115 bits (287), Expect = 1e-25 Identities = 58/120 (48%), Positives = 83/120 (69%), Gaps = 1/120 (0%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAEG-DEDENLLE 415 QF+ L S+V +N QNPQ+L+LIQ+NQAEFL+L+NEP EG D D ++ + Sbjct: 249 QFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFD 308 Query: 414 QFAEGVPQTIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHMNEFDD 235 Q + +P ++ VTPEE E I RLE MGFDRA+V+ + +C+++E L ANYLL+H +F+D Sbjct: 309 QPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)| (AtRAD23-1) Length = 371 Score = 112 bits (279), Expect = 1e-24 Identities = 57/120 (47%), Positives = 81/120 (67%), Gaps = 1/120 (0%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAEGDEDE-NLLE 415 QF+ L ++V +N QNPQ+L+LIQ+NQAEFL+L+NEP EG + E ++ + Sbjct: 252 QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFD 311 Query: 414 QFAEGVPQTIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHMNEFDD 235 Q + +P I VTP E E I RLE MGFDRALV+ + AC+++E L ANYLL++ +F+D Sbjct: 312 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 81.3 bits (199), Expect = 2e-15 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 6/125 (4%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEP----AEGDEDEN 424 QF+++ ++Q N +NPQ+LQ I +Q +F++++NEP A+ + E Sbjct: 240 QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEG 299 Query: 423 LLEQFAEGVPQT--IAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHM 250 + E PQ I VTP+E E I RL+ +GF +LV+ YFAC K+E L AN+LL Sbjct: 300 EVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS-- 357 Query: 249 NEFDD 235 FDD Sbjct: 358 QNFDD 362
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 81.3 bits (199), Expect = 2e-15 Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 6/125 (4%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEP----AEGDEDEN 424 QF+++ ++Q N +NPQ+LQ I +Q +F++++NEP A+ + E Sbjct: 240 QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEG 299 Query: 423 LLEQFAEGVPQT--IAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHM 250 + E PQ I VTP+E E I RL+ +GF +LV+ YFAC K+E L AN+LL Sbjct: 300 EVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS-- 357 Query: 249 NEFDD 235 FDD Sbjct: 358 QNFDD 362
>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 409 Score = 77.0 bits (188), Expect = 4e-14 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 8/127 (6%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAE--------GD 436 QF+ + ++Q N +NPQ+LQ I +Q F++++NEP + G Sbjct: 284 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGG 343 Query: 435 EDENLLEQFAEGVPQTIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLD 256 + + G I VTP+E E I RL+ +GF LV+ YFAC K+E L AN+LL Sbjct: 344 GGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL- 402 Query: 255 HMNEFDD 235 FD+ Sbjct: 403 -QQNFDE 408
>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 416 Score = 73.6 bits (179), Expect = 4e-13 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 15/134 (11%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAE---------- 442 QF+ + ++Q N +NPQ+LQ I +Q F++++NEP + Sbjct: 284 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGG 343 Query: 441 -----GDEDENLLEQFAEGVPQTIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETL 277 G + + G I VTP+E E I RL+ +GF LV+ YFAC K+E L Sbjct: 344 GGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 403 Query: 276 XANYLLDHMNEFDD 235 AN+LL FD+ Sbjct: 404 AANFLL--QQNFDE 415
>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)| Length = 368 Score = 72.8 bits (177), Expect = 7e-13 Identities = 45/119 (37%), Positives = 62/119 (52%) Frame = -1 Query: 591 QFRSLLSLVQANXXXXXXXXXXXXXQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLEQ 412 QF+ L +VQ N +P + Q I N FL+L+ E AEG+ Sbjct: 255 QFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEGES------A 308 Query: 411 FAEGVPQTIAVTPEENEXILRLEGMGFDRALVLXVYFACNKDETLXANYLLDHMNEFDD 235 G Q I +T EE+E I RL +GFDR +V+ Y AC+K+E L ANYL +H +E +D Sbjct: 309 LPSGGIQ-IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
>RAD23_YEAST (P32628) UV excision repair protein RAD23| Length = 398 Score = 55.8 bits (133), Expect = 9e-08 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 8/92 (8%) Frame = -1 Query: 504 ILQLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGVPQ-------TIAVTPEENEXILRL 346 +L+ + DN + + ++ EG++ E E A G+ Q + TPE+++ I RL Sbjct: 305 LLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRL 364 Query: 345 EGMGFDRALVLXVYFACNKDETLXANYLL-DH 253 +GF+R LV+ VYFAC+K+E AN L DH Sbjct: 365 CELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>ARCA_STAEQ (Q5HKU2) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine| dihydrolase) (AD) Length = 411 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Frame = -1 Query: 498 QLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGV-PQTIAVTPEENEXILRLEGMGFDRA 322 Q++QD E L L A+ ED N+ EQF + V ++ + I +L ++A Sbjct: 58 QVLQDEGIEVLYLEKLAAQSIEDSNVREQFIDDVLAESRKTILGHEKEIKKLFSTLSNQA 117 Query: 321 LVLXVYFACNKDE-TLXANYLLDHMNE 244 L+ + K+E L + +L+++M++ Sbjct: 118 LINKIMAGVRKEEIQLESTHLVEYMDD 144
>ARCA2_STAES (Q8CMW1) Arginine deiminase 2 (EC 3.5.3.6) (ADI 2) (Arginine| dihydrolase 2) (AD 2) Length = 411 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Frame = -1 Query: 498 QLIQDNQAEFLRLINEPAEGDEDENLLEQFAEGV-PQTIAVTPEENEXILRLEGMGFDRA 322 Q++QD E L L A+ ED N+ EQF + V ++ + I +L ++A Sbjct: 58 QVLQDEGIEVLYLEKLAAQSIEDSNVREQFIDDVLAESRKTILGHEKEIKKLFSTLSNQA 117 Query: 321 LVLXVYFACNKDE-TLXANYLLDHMNE 244 L+ + K+E L + +L+++M++ Sbjct: 118 LINKIMAGVRKEEIQLESTHLVEYMDD 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,939,546 Number of Sequences: 219361 Number of extensions: 1146397 Number of successful extensions: 2788 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2776 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
