ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17p15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119P16, full insert sequence Length = 1513 Score = 240 bits (121), Expect = 4e-60 Identities = 295/355 (83%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| |||||||||||||| |||| || |||||||| | || ||| ||||||| Sbjct: 1228 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 1169 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaa 353 |||| || ||| | || | |||||||||||| ||||||||||||||| | |||||||||| Sbjct: 1168 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccattgcttcaagacgaa 1109 Query: 354 gtatagnttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 413 |||| | |||||||||||| |||||||| ||||||||||| |||| | |||| | ||||| Sbjct: 1108 gtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctggaaact 1049 Query: 414 gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 473 | ||||| | |||||| || ||||| ||||||||||| ||||||||||| | ||||||| Sbjct: 1048 ggtctagcaaattctcttcatcatcaccctcagctggttcattgattaagtggaggaact 989 Query: 474 cagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttgaa 533 |||| ||||| |||||||||| |||||||||||| || ||||| || ||| ||||||| Sbjct: 988 cagcttggttttcctgaatcagctgcaaaatctggggattttgtttccccaattcttgaa 929 Query: 534 gcagtggctgtaagatctganggttagcctgcactaaagaaagtaagctncggaa 588 ||| ||||||||| || ||| | || || |||||||||||||| ||| | ||||| Sbjct: 928 gcaatggctgtaaaatttgaggattggcttgcactaaagaaagcaaggttcggaa 874
>gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds Length = 1533 Score = 216 bits (109), Expect = 6e-53 Identities = 286/347 (82%) Strand = Plus / Minus Query: 242 aactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgttgcaggca 301 |||||||||||||| |||| || |||||||| | || ||| ||||||||||| || Sbjct: 1214 aactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgttgcaagcg 1155 Query: 302 aagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaagtatagnt 361 ||| | || | |||||||||||| ||||||||||||||| |||||||||||||| | | Sbjct: 1154 aagaacacgtccagaacaagcgcgcggtcaaagcccattggttcaagacgaagtatggct 1095 Query: 362 tcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaactgctctagg 421 |||| |||||| |||||||| ||||||||||| |||| | |||| | |||||| ||||| Sbjct: 1094 tcatcctcctctggagtaactgctatggtctgtggcattgcctctggaaactggtctagc 1035 Query: 422 agattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaactcagcctgg 481 | |||||| || ||||| ||||||||||| ||||||||||| | ||||||||||| ||| Sbjct: 1034 aaattctcttcatcatcaccctcagctggttcattgattaagtggaggaactcagcttgg 975 Query: 482 ttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttgaagcagtggc 541 || |||||||||| |||||||||||| || ||||| || ||| |||||||||| |||| Sbjct: 974 ttttcctgaatcagctgcaaaatctggggattttgtttccccaattcttgaagcaatggc 915 Query: 542 tgtaagatctganggttagcctgcactaaagaaagtaagctncggaa 588 ||||| || ||| | || || |||||||||||||| ||| | ||||| Sbjct: 914 tgtaaaatttgaggattggcttgcactaaagaaagcaaggttcggaa 868
>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full insert sequence Length = 2031 Score = 149 bits (75), Expect = 1e-32 Identities = 183/220 (83%) Strand = Plus / Minus Query: 369 cctcaggagtaacagctatggtctgaggcactccctcagcaaactgctctaggagattct 428 |||| |||||||| ||||||||||| |||| | |||| | |||||| ||||| | ||||| Sbjct: 1093 cctctggagtaactgctatggtctgtggcattgcctctggaaactggtctagcaaattct 1034 Query: 429 cgtcttcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcct 488 | || ||||| ||||||||||| ||||||||||| | ||||||||||| ||||| |||| Sbjct: 1033 cttcatcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcct 974 Query: 489 gaatcaactgcaaaatctgagggttttgctttnccagctcttgaagcagtggctgtaaga 548 |||||| |||||||||||| || ||||| || ||| |||||||||| ||||||||| | Sbjct: 973 gaatcagctgcaaaatctggggattttgtttccccaattcttgaagcaatggctgtaaaa 914 Query: 549 tctganggttagcctgcactaaagaaagtaagctncggaa 588 | ||| | || || |||||||||||||| ||| | ||||| Sbjct: 913 tttgaggattggcttgcactaaagaaagcaaggttcggaa 874
>ref|XM_482516.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1526 Score = 123 bits (62), Expect = 7e-25 Identities = 283/358 (79%), Gaps = 3/358 (0%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| ||||||||||||||||| || || |||||||||| | ||||||||||| Sbjct: 1262 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 1203 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaa 353 |||| || ||| | |||| ||| || || | || ||||| |||||| || ||||| Sbjct: 1202 tgcacgcgaagaatacctccaggaccagatcgcgatcaaaccccatttgttccagacgtt 1143 Query: 354 gtatagnttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 413 |||| | ||| ||||||||||| || ||||| | || ||||||| |||| ||||||||| Sbjct: 1142 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 1083 Query: 414 gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 473 | ||||| | ||| | |||| | ||||| || || || |||||||| || ||||||| Sbjct: 1082 ggtctagcaagttccc---ttcagctccctctgcaggttcgttgattaagcgcaggaact 1026 Query: 474 cagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttgaa 533 |||||||||| |||||||||| ||||||||||| || ||||| || ||| |||||||| Sbjct: 1025 cagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactcttgaa 966 Query: 534 gcagtggctgtaagatctganggttagcctgcactaaagaaagtaagctncggaactg 591 ||| ||||| | || ||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 965 gcaaaggctgcagaatttgagggttagcctgcaccaaagaaagcaagccacggaactg 908
>dbj|AK064881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J24, full insert sequence Length = 1526 Score = 123 bits (62), Expect = 7e-25 Identities = 283/358 (79%), Gaps = 3/358 (0%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| ||||||||||||||||| || || |||||||||| | ||||||||||| Sbjct: 1262 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 1203 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaa 353 |||| || ||| | |||| ||| || || | || ||||| |||||| || ||||| Sbjct: 1202 tgcacgcgaagaatacctccaggaccagatcgcgatcaaaccccatttgttccagacgtt 1143 Query: 354 gtatagnttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 413 |||| | ||| ||||||||||| || ||||| | || ||||||| |||| ||||||||| Sbjct: 1142 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 1083 Query: 414 gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 473 | ||||| | ||| | |||| | ||||| || || || |||||||| || ||||||| Sbjct: 1082 ggtctagcaagttccc---ttcagctccctctgcaggttcgttgattaagcgcaggaact 1026 Query: 474 cagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttgaa 533 |||||||||| |||||||||| ||||||||||| || ||||| || ||| |||||||| Sbjct: 1025 cagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactcttgaa 966 Query: 534 gcagtggctgtaagatctganggttagcctgcactaaagaaagtaagctncggaactg 591 ||| ||||| | || ||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 965 gcaaaggctgcagaatttgagggttagcctgcaccaaagaaagcaagccacggaactg 908
>dbj|AK066105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052E24, full insert sequence Length = 442 Score = 121 bits (61), Expect = 3e-24 Identities = 133/158 (84%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| |||||||||||||| |||| || |||||||| | || ||| ||||||| Sbjct: 158 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 99 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaa 353 |||| || ||| | || | |||||||||||| ||||||||||||||| | |||||||||| Sbjct: 98 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccattgcttcaagacgaa 39 Query: 354 gtatagnttcattctcctcaggagtaacagctatggtc 391 |||| | |||||||||||| |||||||| ||||||||| Sbjct: 38 gtatggcttcattctcctctggagtaactgctatggtc 1
>dbj|AK063768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B09, full insert sequence Length = 621 Score = 97.6 bits (49), Expect = 4e-17 Identities = 239/303 (78%), Gaps = 3/303 (0%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| ||||||||||||||||| || || |||||||||| | ||||||||||| Sbjct: 303 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcggccaacagctcatccttgt 244 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaa 353 |||| || ||| | |||| ||| || || | || ||||| |||||| || ||||| Sbjct: 243 tgcacgcgaagaatacctccaggaccagatcgcgatcaaaccccatttgttccagacgtt 184 Query: 354 gtatagnttcattctcctcaggagtaacagctatggtctgaggcactccctcagcaaact 413 |||| | ||| ||||||||||| || ||||| | || ||||||| |||| ||||||||| Sbjct: 183 gtatggcttcgttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaact 124 Query: 414 gctctaggagattctcgtcttcatcgccctcagctggctcattgattaaacgaaggaact 473 | ||||| | ||| | |||| | ||||| || || || |||||||| || ||||||| Sbjct: 123 ggtctagcaagttccc---ttcagctccctctgcaggttcgttgattaagcgcaggaact 67 Query: 474 cagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttgaa 533 |||||||||| |||||||||| ||||||||||| || ||||| || ||| |||||||| Sbjct: 66 cagcctggttttcctgaatcagttgcaaaatctgtggattttgtttccccaactcttgaa 7 Query: 534 gca 536 ||| Sbjct: 6 gca 4
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 93.7 bits (47), Expect = 6e-16 Identities = 94/110 (85%) Strand = Plus / Minus Query: 434 tcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcctgaatc 493 ||||| ||||||||||| ||||||||||| | ||||||||||| ||||| ||||||||| Sbjct: 14311613 tcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcctgaatc 14311554 Query: 494 aactgcaaaatctgagggttttgctttnccagctcttgaagcagtggctg 543 | |||||||||||| || ||||| || ||| |||||||||| |||||| Sbjct: 14311553 agctgcaaaatctggggattttgtttccccaattcttgaagcaatggctg 14311504 Score = 65.9 bits (33), Expect = 1e-07 Identities = 88/107 (82%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| |||||||||||||| |||| || |||||||| | || ||| ||||||| Sbjct: 14312006 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 14311947 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccatt 340 |||| || ||| | || | |||||||||||| ||||||||||||||| Sbjct: 14311946 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccatt 14311900 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 349 acgaagtatagnttcattctcctcaggagtaacagctatggtctgaggcactccctcagc 408 ||||||||| | |||||||||||| |||||||| ||||||||||| |||| | |||| | Sbjct: 14311781 acgaagtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctgg 14311722 Query: 409 aaactgctctag 420 |||||| ||||| Sbjct: 14311721 aaactggtctag 14311710
>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1261_A08 Length = 162113 Score = 93.7 bits (47), Expect = 6e-16 Identities = 94/110 (85%) Strand = Plus / Minus Query: 434 tcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcctgaatc 493 ||||| ||||||||||| ||||||||||| | ||||||||||| ||||| ||||||||| Sbjct: 128158 tcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcctgaatc 128099 Query: 494 aactgcaaaatctgagggttttgctttnccagctcttgaagcagtggctg 543 | |||||||||||| || ||||| || ||| |||||||||| |||||| Sbjct: 128098 agctgcaaaatctggggattttgtttccccaattcttgaagcaatggctg 128049 Score = 65.9 bits (33), Expect = 1e-07 Identities = 88/107 (82%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| |||||||||||||| |||| || |||||||| | || ||| ||||||| Sbjct: 128551 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 128492 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccatt 340 |||| || ||| | || | |||||||||||| ||||||||||||||| Sbjct: 128491 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccatt 128445 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 349 acgaagtatagnttcattctcctcaggagtaacagctatggtctgaggcactccctcagc 408 ||||||||| | |||||||||||| |||||||| ||||||||||| |||| | |||| | Sbjct: 128326 acgaagtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctgg 128267 Query: 409 aaactgctctag 420 |||||| ||||| Sbjct: 128266 aaactggtctag 128255
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 93.7 bits (47), Expect = 6e-16 Identities = 94/110 (85%) Strand = Plus / Minus Query: 434 tcatcgccctcagctggctcattgattaaacgaaggaactcagcctggttgtcctgaatc 493 ||||| ||||||||||| ||||||||||| | ||||||||||| ||||| ||||||||| Sbjct: 3416 tcatcaccctcagctggttcattgattaagtggaggaactcagcttggttttcctgaatc 3357 Query: 494 aactgcaaaatctgagggttttgctttnccagctcttgaagcagtggctg 543 | |||||||||||| || ||||| || ||| |||||||||| |||||| Sbjct: 3356 agctgcaaaatctggggattttgtttccccaattcttgaagcaatggctg 3307 Score = 65.9 bits (33), Expect = 1e-07 Identities = 88/107 (82%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgt 293 ||||||| |||||||||||||| |||| || |||||||| | || ||| ||||||| Sbjct: 3809 cgtcgtcgaactcgttcatgtgatctaggagatagtttgccgccagctgctcgtccttgt 3750 Query: 294 tgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccatt 340 |||| || ||| | || | |||||||||||| ||||||||||||||| Sbjct: 3749 tgcaagcgaagaacacgtccagaacaagcgcgcggtcaaagcccatt 3703 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 349 acgaagtatagnttcattctcctcaggagtaacagctatggtctgaggcactccctcagc 408 ||||||||| | |||||||||||| |||||||| ||||||||||| |||| | |||| | Sbjct: 3584 acgaagtatggcttcattctcctctggagtaactgctatggtctgtggcattgcctctgg 3525 Query: 409 aaactgctctag 420 |||||| ||||| Sbjct: 3524 aaactggtctag 3513
>gb|BT016993.1| Zea mays clone EK07D2305C08.c mRNA sequence Length = 989 Score = 91.7 bits (46), Expect = 2e-15 Identities = 124/151 (82%) Strand = Plus / Minus Query: 242 aactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgttgcaggca 301 ||||||| |||||| || || |||||||| |||| || ||||| ||||||||| || Sbjct: 734 aactcgtgcatgtgatccaagaggtagttggcggtcagctgctcattcttgttgcacgcg 675 Query: 302 aagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaagtatagnt 361 ||| | |||| ||| || || ||||||||||||||||| || |||||||||||||||| | Sbjct: 674 aagaacacctccaggaccagtgcccggtcaaagcccatcccttcaagacgaagtatagct 615 Query: 362 tcattctcctcaggagtaacagctatggtct 392 || |||||||| ||||| || || ||||||| Sbjct: 614 tcgttctcctctggagtcactgcaatggtct 584
>gb|AY106748.1| Zea mays PCO104379 mRNA sequence Length = 779 Score = 91.7 bits (46), Expect = 2e-15 Identities = 89/104 (85%) Strand = Plus / Minus Query: 289 cttgttgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccattccctcaag 348 |||||||||||| ||| | || | ||| || || ||||||||||||||||| || ||||| Sbjct: 480 cttgttgcaggcgaagaacacttccaggacgagtgcccggtcaaagcccatcccttcaag 421 Query: 349 acgaagtatagnttcattctcctcaggagtaacagctatggtct 392 ||||||||||| |||||||||||| ||||| || || ||||||| Sbjct: 420 acgaagtatagcttcattctcctctggagtgactgcaatggtct 377
>gb|AY108301.1| Zea mays PCO104381 mRNA sequence Length = 1521 Score = 83.8 bits (42), Expect = 6e-13 Identities = 123/151 (81%) Strand = Plus / Minus Query: 242 aactcgttcatgtggtctaacaggtagtttgcggntagggtctcatccttgttgcaggca 301 ||||||| |||||| || || |||||||| |||| || ||||| ||||||||| || Sbjct: 1273 aactcgtgcatgtgatccaagaggtagttggcggtcagctgctcattcttgttgcacgcg 1214 Query: 302 aagtaaacctncagaacaagcgcccggtcaaagcccattccctcaagacgaagtatagnt 361 ||| | || | ||| || || ||||||||||||||||| || |||||||||||||||| | Sbjct: 1213 aagaacacttccaggaccagtgcccggtcaaagcccatcccttcaagacgaagtatagct 1154 Query: 362 tcattctcctcaggagtaacagctatggtct 392 || |||||||| ||||| || || ||||||| Sbjct: 1153 tcgttctcctctggagtcactgcaatggtct 1123 Score = 44.1 bits (22), Expect = 0.52 Identities = 36/41 (87%) Strand = Plus / Minus Query: 527 tcttgaagcagtggctgtaagatctganggttagcctgcac 567 |||||||||| |||||| || |||||| | ||||||||||| Sbjct: 988 tcttgaagcaatggctgcaaaatctgaggattagcctgcac 948
>gb|BT017634.1| Zea mays clone EL01N0437H07.c mRNA sequence Length = 819 Score = 77.8 bits (39), Expect = 4e-11 Identities = 85/101 (84%) Strand = Plus / Plus Query: 470 aactcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctct 529 |||||||| || || |||||||||||| ||||||| || |||||||| || | |||||| Sbjct: 444 aactcagcttgattttcctgaatcaaccgcaaaatttgggggttttgtttacctagctct 503 Query: 530 tgaagcagtggctgtaagatctganggttagcctgcactaa 570 ||||||| |||||| ||||| ||| | |||||||| ||||| Sbjct: 504 tgaagcattggctgcaagatttgaggattagcctggactaa 544
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 77.8 bits (39), Expect = 4e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 455 ttgattaaacgaaggaactcagcctggttgtcctgaatcaactgcaaaatctgagggttt 514 |||||||| || ||||||||||||||||| |||||||||| ||||||||||| || ||| Sbjct: 20793712 ttgattaagcgcaggaactcagcctggttttcctgaatcagttgcaaaatctgtggattt 20793653 Query: 515 tgctttnccagctcttgaagca 536 || || ||| ||||||||||| Sbjct: 20793652 tgtttccccaactcttgaagca 20793631 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcgg 275 ||||||| ||||||||||||||||| || || |||||||||| Sbjct: 20794149 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcgg 20794108 Score = 46.1 bits (23), Expect = 0.13 Identities = 36/41 (87%) Strand = Plus / Minus Query: 551 tganggttagcctgcactaaagaaagtaagctncggaactg 591 ||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 20793539 tgagggttagcctgcaccaaagaaagcaagccacggaactg 20793499 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 365 ttctcctcaggagtaacagctatggtctgaggcactccctcagcaaactgctctag 420 ||||||||||| || ||||| | || ||||||| |||| |||||||||| ||||| Sbjct: 20793888 ttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaactggtctag 20793833
>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1124_B05 Length = 109917 Score = 77.8 bits (39), Expect = 4e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 455 ttgattaaacgaaggaactcagcctggttgtcctgaatcaactgcaaaatctgagggttt 514 |||||||| || ||||||||||||||||| |||||||||| ||||||||||| || ||| Sbjct: 24845 ttgattaagcgcaggaactcagcctggttttcctgaatcagttgcaaaatctgtggattt 24786 Query: 515 tgctttnccagctcttgaagca 536 || || ||| ||||||||||| Sbjct: 24785 tgtttccccaactcttgaagca 24764 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 234 cgtcgtcaaactcgttcatgtggtctaacaggtagtttgcgg 275 ||||||| ||||||||||||||||| || || |||||||||| Sbjct: 25282 cgtcgtcgaactcgttcatgtggtccaagagatagtttgcgg 25241 Score = 46.1 bits (23), Expect = 0.13 Identities = 36/41 (87%) Strand = Plus / Minus Query: 551 tganggttagcctgcactaaagaaagtaagctncggaactg 591 ||| ||||||||||||| |||||||| |||| |||||||| Sbjct: 24672 tgagggttagcctgcaccaaagaaagcaagccacggaactg 24632 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 365 ttctcctcaggagtaacagctatggtctgaggcactccctcagcaaactgctctag 420 ||||||||||| || ||||| | || ||||||| |||| |||||||||| ||||| Sbjct: 25021 ttctcctcaggtgtgacagccactgtttgaggcattcccgcagcaaactggtctag 24966
>gb|AY103604.1| Zea mays PCO142082 mRNA sequence Length = 1672 Score = 69.9 bits (35), Expect = 9e-09 Identities = 84/101 (83%) Strand = Plus / Minus Query: 470 aactcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctct 529 |||||||| || || |||||||||||| ||| ||| || |||||||| || | |||||| Sbjct: 1100 aactcagcttgattttcctgaatcaaccgcagaatttgtgggttttgtttacctagctct 1041 Query: 530 tgaagcagtggctgtaagatctganggttagcctgcactaa 570 ||||||| |||||| ||||| ||| | |||||||| ||||| Sbjct: 1040 tgaagcattggctgcaagatttgaggattagcctggactaa 1000
>dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B07, full insert sequence Length = 1629 Score = 52.0 bits (26), Expect = 0.002 Identities = 64/77 (83%) Strand = Plus / Minus Query: 473 tcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttga 532 |||||||| || |||||||||||| |||| || || || || ||||| | ||||||||| Sbjct: 1141 tcagcctgattttcctgaatcaaccgcaagatttgcggattctgcttcccaagctcttga 1082 Query: 533 agcagtggctgtaagat 549 |||| |||||| ||||| Sbjct: 1081 agcattggctgcaagat 1065
>dbj|AK062241.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E09, full insert sequence Length = 726 Score = 52.0 bits (26), Expect = 0.002 Identities = 64/77 (83%) Strand = Plus / Minus Query: 473 tcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttga 532 |||||||| || |||||||||||| |||| || || || || ||||| | ||||||||| Sbjct: 238 tcagcctgattttcctgaatcaaccgcaagatttgcggattctgcttcccaagctcttga 179 Query: 533 agcagtggctgtaagat 549 |||| |||||| ||||| Sbjct: 178 agcattggctgcaagat 162
>dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C08, full insert sequence Length = 1567 Score = 52.0 bits (26), Expect = 0.002 Identities = 64/77 (83%) Strand = Plus / Minus Query: 473 tcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttga 532 |||||||| || |||||||||||| |||| || || || || ||||| | ||||||||| Sbjct: 1106 tcagcctgattttcctgaatcaaccgcaagatttgcggattctgcttcccaagctcttga 1047 Query: 533 agcagtggctgtaagat 549 |||| |||||| ||||| Sbjct: 1046 agcattggctgcaagat 1030
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.008 Identities = 60/72 (83%) Strand = Plus / Minus Query: 473 tcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttga 532 |||||||| || |||||||||||| |||| || || || || ||||| | ||||||||| Sbjct: 8736514 tcagcctgattttcctgaatcaaccgcaagatttgcggattctgcttcccaagctcttga 8736455 Query: 533 agcagtggctgt 544 |||| ||||||| Sbjct: 8736454 agcattggctgt 8736443
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 50.1 bits (25), Expect = 0.008 Identities = 60/72 (83%) Strand = Plus / Minus Query: 473 tcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttga 532 |||||||| || |||||||||||| |||| || || || || ||||| | ||||||||| Sbjct: 6835 tcagcctgattttcctgaatcaaccgcaagatttgcggattctgcttcccaagctcttga 6776 Query: 533 agcagtggctgt 544 |||| ||||||| Sbjct: 6775 agcattggctgt 6764
>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01 Length = 174085 Score = 50.1 bits (25), Expect = 0.008 Identities = 60/72 (83%) Strand = Plus / Minus Query: 473 tcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctcttga 532 |||||||| || |||||||||||| |||| || || || || ||||| | ||||||||| Sbjct: 151496 tcagcctgattttcctgaatcaaccgcaagatttgcggattctgcttcccaagctcttga 151437 Query: 533 agcagtggctgt 544 |||| ||||||| Sbjct: 151436 agcattggctgt 151425
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 449 ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 496 |||||||| ||||| ||||||||||| | ||||| |||||||||||| Sbjct: 4411745 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 4411698
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 449 ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 496 |||||||| ||||| ||||||||||| | ||||| |||||||||||| Sbjct: 95309 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 95262
>dbj|AK104908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H06, full insert sequence Length = 1179 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 449 ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 496 |||||||| ||||| ||||||||||| | ||||| |||||||||||| Sbjct: 691 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 644
>dbj|AK069065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007H17, full insert sequence Length = 1675 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 449 ggctcattgattaaacgaaggaactcagcctggttgtcctgaatcaac 496 |||||||| ||||| ||||||||||| | ||||| |||||||||||| Sbjct: 1138 ggctcatttattaactgaaggaactcatcatggttctcctgaatcaac 1091
>emb|AL359980.9| Human DNA sequence from clone RP5-1027O15 on chromosome 11, complete sequence Length = 83218 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 caaaatctcaaaaagatctct 127 ||||||||||||||||||||| Sbjct: 32667 caaaatctcaaaaagatctct 32687
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 42.1 bits (21), Expect = 2.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 349 acgaagtatagnttcattctcctcaggagtaacagctatggtct 392 ||||||||||| ||| |||||||| ||||| || || ||||||| Sbjct: 107902 acgaagtatagcttcgttctcctctggagtgactgcaatggtct 107945 Score = 42.1 bits (21), Expect = 2.0 Identities = 50/60 (83%) Strand = Plus / Plus Query: 289 cttgttgcaggcaaagtaaacctncagaacaagcgcccggtcaaagcccattccctcaag 348 |||||||||||| || | || | ||| ||||| ||||||||||||||||| || ||||| Sbjct: 107742 cttgttgcaggcgaaaaacacttccaggacaagtgcccggtcaaagcccatcccttcaag 107801
>ref|XM_966849.1| PREDICTED: Tribolium castaneum similar to CG14517-PA (LOC660633), mRNA Length = 909 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ttgtgcatgtaattcagaaac 207 ||||||||||||||||||||| Sbjct: 341 ttgtgcatgtaattcagaaac 321
>gb|AC106849.5| Homo sapiens chromosome 11, clone CTD-2154J7, complete sequence Length = 81277 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 caaaatctcaaaaagatctct 127 ||||||||||||||||||||| Sbjct: 66343 caaaatctcaaaaagatctct 66363
>gb|AC110058.4| Homo sapiens chromosome 11, clone CTD2-3012A18, complete sequence Length = 158915 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 caaaatctcaaaaagatctct 127 ||||||||||||||||||||| Sbjct: 39886 caaaatctcaaaaagatctct 39866
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 caaaatctcaaaaagatctct 127 ||||||||||||||||||||| Sbjct: 515690 caaaatctcaaaaagatctct 515710
>gb|AC021699.5|AC021699 Homo sapiens chromosome 11, clone RP11-277B22, complete sequence Length = 163386 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 caaaatctcaaaaagatctct 127 ||||||||||||||||||||| Sbjct: 103893 caaaatctcaaaaagatctct 103913
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 gacaaggacagaaaagaattacaga 94 |||||||| |||||||||||||||| Sbjct: 1567580 gacaaggatagaaaagaattacaga 1567556
>gb|AY108395.1| Zea mays PCO142081 mRNA sequence Length = 1776 Score = 42.1 bits (21), Expect = 2.0 Identities = 76/95 (80%) Strand = Plus / Minus Query: 470 aactcagcctggttgtcctgaatcaactgcaaaatctgagggttttgctttnccagctct 529 |||||||| || || ||||||||||| ||| || || |||||||| || | || ||| Sbjct: 1118 aactcagcttgattttcctgaatcaaacgcaggatttgtgggttttgtttgcctagttct 1059 Query: 530 tgaagcagtggctgtaagatctganggttagcctg 564 ||||||| |||||| ||||| ||| | |||||||| Sbjct: 1058 tgaagcattggctgcaagatttgaggattagcctg 1024
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 42.1 bits (21), Expect = 2.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 507 gagggttttgctttnccagctcttgaagcagtggct 542 ||||| |||| ||| ||||||||||||||| ||||| Sbjct: 699978 gagggctttggtttgccagctcttgaagcaatggct 700013
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 42.1 bits (21), Expect = 2.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 507 gagggttttgctttnccagctcttgaagcagtggct 542 ||||| |||| ||| ||||||||||||||| ||||| Sbjct: 1254387 gagggctttggtttgccagctcttgaagcaatggct 1254352
>gb|AC150573.4| Bos taurus BAC CH240-238N22 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 163445 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 ggtctcatccttgttgcaggcaaagtaa 307 |||||| ||||||||| ||||||||||| Sbjct: 7642 ggtctcttccttgttggaggcaaagtaa 7669
>ref|XM_418952.1| PREDICTED: Gallus gallus similar to solute carrier family 35, member B3; CGI-19 protein; chromosome 6 open reading frame 196 (LOC420863), mRNA Length = 1624 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ttgtcctgaatcaactgcaa 501 |||||||||||||||||||| Sbjct: 314 ttgtcctgaatcaactgcaa 295
>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a nicotinamide nucleotide adenylyltransferase 1 (NMNAT1) pseudogene and a high-mobility group box 3 (HMGB3) pseudogene, complete sequence Length = 184024 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 aagtgacaaaatctcaaaaa 120 |||||||||||||||||||| Sbjct: 19760 aagtgacaaaatctcaaaaa 19741
>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162313 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgggcttgtgcatgtaattc 201 |||||||||||||||||||| Sbjct: 96340 tgggcttgtgcatgtaattc 96359
>emb|BX510349.5| Zebrafish DNA sequence from clone CH211-69E13 in linkage group 7, complete sequence Length = 152064 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 caaggacagaaaagaattacagac 95 ||||||||||||||||||| |||| Sbjct: 103412 caaggacagaaaagaattaaagac 103389
>emb|BX950713.2| Gallus gallus finished cDNA, clone ChEST64l19 Length = 1376 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ttgtcctgaatcaactgcaa 501 |||||||||||||||||||| Sbjct: 68 ttgtcctgaatcaactgcaa 49
>emb|BX004772.17| Zebrafish DNA sequence from clone DKEY-15L1 in linkage group 7, complete sequence Length = 210545 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 caaggacagaaaagaattacagac 95 ||||||||||||||||||| |||| Sbjct: 88258 caaggacagaaaagaattaaagac 88235
>gb|AC009120.8|AC009120 Homo sapiens chromosome 16 clone RP11-484E3, complete sequence Length = 195342 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aaaatctgagggttttgctt 519 |||||||||||||||||||| Sbjct: 117685 aaaatctgagggttttgctt 117666
>dbj|AB113354.2| Sus scrofa 433 kb genomic segment, located between the non-classical and classical SLA class I gene cluster, clone: BAC 499E6 Length = 154749 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ctctaaggcctgccctgtga 143 |||||||||||||||||||| Sbjct: 83267 ctctaaggcctgccctgtga 83286
>emb|BX664628.5| Zebrafish DNA sequence from clone CH211-147D7 in linkage group 20, complete sequence Length = 101135 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 caaggacagaaaagaattacagac 95 |||||||||||||||| ||||||| Sbjct: 100243 caaggacagaaaagaagtacagac 100266
>emb|BX649591.7| Zebrafish DNA sequence from clone CH211-181H6 in linkage group 20, complete sequence Length = 70838 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 caaggacagaaaagaattacagac 95 |||||||||||||||| ||||||| Sbjct: 1108 caaggacagaaaagaagtacagac 1131
>gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, complete sequence Length = 148876 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 gtgacaaaatctcaaaaaga 122 |||||||||||||||||||| Sbjct: 59705 gtgacaaaatctcaaaaaga 59686
>gb|AC001226.1|AC001226 Genomic sequence from Human 13, complete sequence Length = 106988 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 gatgtcgttaagtctgtaaattaa 35 |||||| ||||||||||||||||| Sbjct: 49530 gatgtctttaagtctgtaaattaa 49553 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,479,370 Number of Sequences: 3902068 Number of extensions: 4479370 Number of successful extensions: 83390 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 83158 Number of HSP's gapped (non-prelim): 228 length of query: 594 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 571 effective length of database: 17,143,297,704 effective search space: 9788822988984 effective search space used: 9788822988984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
