ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18e18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192800.1| Oryza sativa (japonica cultivar-group), predic... 198 2e-47
2ref|NM_192420.1| Oryza sativa (japonica cultivar-group), predic... 107 5e-20
3dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 5e-20
4dbj|AK062263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 5e-20
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
6dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
7gb|BT014620.1| Lycopersicon esculentum clone 134123F, mRNA sequence 66 2e-07
8ref|NM_112102.2| Arabidopsis thaliana EMB2742; CTP synthase/ cat... 64 7e-07
9gb|BT008360.1| Arabidopsis thaliana At3g12670 gene, complete cds 64 7e-07
10gb|AY093110.1| Arabidopsis thaliana CTP-synthetase, putative (At... 64 7e-07
11ref|NM_129042.1| Arabidopsis thaliana CTP synthase/ catalytic AT... 56 2e-04
12ref|NM_102819.2| Arabidopsis thaliana CTP synthase/ catalytic AT... 54 7e-04
13gb|BT013487.1| Lycopersicon esculentum clone 132171F, mRNA sequence 54 7e-04
14emb|BX813942.1|CNS0AASW Arabidopsis thaliana Full-length cDNA Co... 54 7e-04
15dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
16gb|BC085949.1| Rattus norvegicus cytidine triphosphate synthase ... 50 0.011
17gb|BC085358.1| Rattus norvegicus cytidine triphosphate synthase ... 50 0.011
18ref|NM_001034998.1| Rattus norvegicus cytidine triphosphate synt... 50 0.011
19gb|AC004135.1|AC004135 Genomic sequence for Arabidopsis thaliana... 50 0.011
20gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.042
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.042
22ref|XM_775504.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.17
23ref|XM_788608.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.65
24ref|XM_774974.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.65
25emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segme... 44 0.65
26gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 44 0.65
27ref|NM_118151.3| Arabidopsis thaliana CTP synthase/ catalytic AT... 42 2.6
28gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700,... 42 2.6
29gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome ... 42 2.6
30gb|AC099578.8| Mus musculus chromosome 10, clone RP23-182D17, co... 42 2.6
31emb|AL121982.19|HS1185H19 Human DNA sequence from clone RP5-1185... 42 2.6
32gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosom... 42 2.6
33gb|DQ397608.1| Cenarchaeum symbiosum clone C12B02, complete sequ... 42 2.6
34emb|X01423.1|OCUTGLOB Rabbit uteroglobin gene 42 2.6 
>ref|NM_192800.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1860

 Score =  198 bits (100), Expect = 2e-47
 Identities = 288/351 (82%)
 Strand = Plus / Minus

                                                                        
Query: 389  aaccacatggccattgcagctgtcctgcagcacctggtccagttgcccgcacgctgcagc 448
            |||||| ||||||||||||||| | |||||||     |||||||||||  | |  |||||
Sbjct: 1731 aaccacgtggccattgcagctgccttgcagcaatctatccagttgcccagatgaggcagc 1672

                                                                        
Query: 449  gattagtccgacaaatagaggtgaaggttttgaaggcgttgacttgaactccggatggaa 508
             |||||||||||||| || || || |||||||||||  |||||||||| || ||||||||
Sbjct: 1671 aattagtccgacaaagagtggagacggttttgaaggtcttgacttgaattcaggatggaa 1612

                                                                        
Query: 509  ttggacgccgatgaagaacgggtgatcaggtatttcaatgatctccattctctgtccagt 568
            |||  | || |  ||  |  ||||||  || |||||||| ||||||||||||  ||||||
Sbjct: 1611 ttgtgcaccaacaaaatatcggtgattggggatttcaattatctccattctccttccagt 1552

                                                                        
Query: 569  ctcgtccttgccaacaaactgaagtccggcattttcaaatgctggcaccatatcaggatt 628
            ||| || || ||||||||||||||||| |||||||||||  ||||||||||||| |||||
Sbjct: 1551 ctcatctttcccaacaaactgaagtccagcattttcaaactctggcaccatatctggatt 1492

                                                                        
Query: 629  tacctcatatctgtgccgatgcctctcatctacgaagttgacatcaccatagagcttggc 688
             ||||||||||||||||||||||||||||||||  |  ||||||  ||||| |  || ||
Sbjct: 1491 cacctcatatctgtgccgatgcctctcatctacataactgacattgccatacaatttagc 1432

                                                               
Query: 689  agatttgcagtcagtaaccttgaaaaatgttctncttgatccaaggcgcat 739
            ||| ||||| |||| ||||| ||||||||| || |||||||| ||||||||
Sbjct: 1431 agacttgcaatcagcaacctcgaaaaatgtcctccttgatcctaggcgcat 1381
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>ref|NM_192420.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1770

 Score =  107 bits (54), Expect = 5e-20
 Identities = 146/177 (82%)
 Strand = Plus / Minus

                                                                        
Query: 563  tccagtctcgtccttgccaacaaactgaagtccggcattttcaaatgctggcaccatatc 622
            |||| |||| ||||||||||||||   ||||||||| || |||||  |||| ||||| ||
Sbjct: 1485 tccactctcatccttgccaacaaatgaaagtccggccttctcaaactctggtaccatttc 1426

                                                                        
Query: 623  aggatttacctcatatctgtgccgatgcctctcatctacgaagttgacatcaccatagag 682
            ||||||||||||||||||||| ||||| || || ||||||||  |  ||| |||||| ||
Sbjct: 1425 aggatttacctcatatctgtgtcgatgtctttcgtctacgaatctagcattaccatacag 1366

                                                                     
Query: 683  cttggcagatttgcagtcagtaaccttgaaaaatgttctncttgatccaaggcgcat 739
            ||| |||||||||||  ||||  | | |||| ||||||| ||||||||||| |||||
Sbjct: 1365 ctttgcagatttgcatgcagtggcatggaaatatgttctccttgatccaagccgcat 1309
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>dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O19, full
            insert sequence
          Length = 2451

 Score =  107 bits (54), Expect = 5e-20
 Identities = 146/177 (82%)
 Strand = Plus / Minus

                                                                        
Query: 563  tccagtctcgtccttgccaacaaactgaagtccggcattttcaaatgctggcaccatatc 622
            |||| |||| ||||||||||||||   ||||||||| || |||||  |||| ||||| ||
Sbjct: 1712 tccactctcatccttgccaacaaatgaaagtccggccttctcaaactctggtaccatttc 1653

                                                                        
Query: 623  aggatttacctcatatctgtgccgatgcctctcatctacgaagttgacatcaccatagag 682
            ||||||||||||||||||||| ||||| || || ||||||||  |  ||| |||||| ||
Sbjct: 1652 aggatttacctcatatctgtgtcgatgtctttcgtctacgaatctagcattaccatacag 1593

                                                                     
Query: 683  cttggcagatttgcagtcagtaaccttgaaaaatgttctncttgatccaaggcgcat 739
            ||| |||||||||||  ||||  | | |||| ||||||| ||||||||||| |||||
Sbjct: 1592 ctttgcagatttgcatgcagtggcatggaaatatgttctccttgatccaagccgcat 1536
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>dbj|AK062263.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H06, full
           insert sequence
          Length = 1288

 Score =  107 bits (54), Expect = 5e-20
 Identities = 146/177 (82%)
 Strand = Plus / Minus

                                                                       
Query: 563 tccagtctcgtccttgccaacaaactgaagtccggcattttcaaatgctggcaccatatc 622
           |||| |||| ||||||||||||||   ||||||||| || |||||  |||| ||||| ||
Sbjct: 617 tccactctcatccttgccaacaaatgaaagtccggccttctcaaactctggtaccatttc 558

                                                                       
Query: 623 aggatttacctcatatctgtgccgatgcctctcatctacgaagttgacatcaccatagag 682
           ||||||||||||||||||||| ||||| || || ||||||||  |  ||| |||||| ||
Sbjct: 557 aggatttacctcatatctgtgtcgatgtctttcgtctacgaatctagcattaccatacag 498

                                                                    
Query: 683 cttggcagatttgcagtcagtaaccttgaaaaatgttctncttgatccaaggcgcat 739
           ||| |||||||||||  ||||  | | |||| ||||||| ||||||||||| |||||
Sbjct: 497 ctttgcagatttgcatgcagtggcatggaaatatgttctccttgatccaagccgcat 441
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                            
Query: 551      ctccattctctgtccagtctcgtccttgccaacaaactgaagtccggcattttcaaatgc 610
                ||||||||||  ||||||||| || || ||||||||||||||||| |||||||||||  |
Sbjct: 24495906 ctccattctccttccagtctcatctttcccaacaaactgaagtccagcattttcaaactc 24495965

                                       
Query: 611      tggcaccatatcaggatttacct 633
                |||||||||||| ||||| ||||
Sbjct: 24495966 tggcaccatatctggattcacct 24495988



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                                
Query: 630      acctcatatctgtgccgatgcctctcatctac 661
                ||||||||||||||||||||||||||||||||
Sbjct: 24496128 acctcatatctgtgccgatgcctctcatctac 24496159



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                            
Query: 563      tccagtctcgtccttgccaacaaactgaagtccggcattttcaaatgctggcaccatatc 622
                |||| |||| ||||||||||||||   ||||||||| || |||||  |||| ||||| ||
Sbjct: 26513754 tccactctcatccttgccaacaaatgaaagtccggccttctcaaactctggtaccatttc 26513695

                           
Query: 623      aggatttacct 633
                |||||||||||
Sbjct: 26513694 aggatttacct 26513684



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 456      ccgacaaatagaggtgaaggttttgaaggcgttgacttgaactccggatggaattg 511
                |||||||| || || || |||||||||||  |||||||||| || |||||||||||
Sbjct: 24495732 ccgacaaagagtggagacggttttgaaggtcttgacttgaattcaggatggaattg 24495787
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0686E09
          Length = 156425

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                         
Query: 551   ctccattctctgtccagtctcgtccttgccaacaaactgaagtccggcattttcaaatgc 610
             ||||||||||  ||||||||| || || ||||||||||||||||| |||||||||||  |
Sbjct: 76290 ctccattctccttccagtctcatctttcccaacaaactgaagtccagcattttcaaactc 76349

                                    
Query: 611   tggcaccatatcaggatttacct 633
             |||||||||||| ||||| ||||
Sbjct: 76350 tggcaccatatctggattcacct 76372



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                             
Query: 630   acctcatatctgtgccgatgcctctcatctac 661
             ||||||||||||||||||||||||||||||||
Sbjct: 76512 acctcatatctgtgccgatgcctctcatctac 76543



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 456   ccgacaaatagaggtgaaggttttgaaggcgttgacttgaactccggatggaattg 511
             |||||||| || || || |||||||||||  |||||||||| || |||||||||||
Sbjct: 76116 ccgacaaagagtggagacggttttgaaggtcttgacttgaattcaggatggaattg 76171
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>gb|BT014620.1| Lycopersicon esculentum clone 134123F, mRNA sequence
          Length = 1912

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 613  gcaccatatcaggatttacctcatatctgtgccgatgcctctcatctac 661
            |||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct: 1635 gcaccatatcaggattcacctcatatctatgacggtgcctctcatctac 1587
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>ref|NM_112102.2| Arabidopsis thaliana EMB2742; CTP synthase/ catalytic AT3G12670
            (EMB2742) mRNA, complete cds
          Length = 2056

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 617  catatcaggatttacctcatatctgtgccgatgcctctcatctacgaagttgacatcacc 676
            |||||| ||||||||||||||||||||||  || | ||||||||| || ||  ||| |||
Sbjct: 1507 catatctggatttacctcatatctgtgcctgtgtcgctcatctacaaactttgcattacc 1448

                                            
Query: 677  atagagcttggcagatttgcagtcagtaacct 708
             || ||||||||||| ||||| |||| |||||
Sbjct: 1447 gtacagcttggcagacttgcaatcagcaacct 1416
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>gb|BT008360.1| Arabidopsis thaliana At3g12670 gene, complete cds
          Length = 1776

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 617  catatcaggatttacctcatatctgtgccgatgcctctcatctacgaagttgacatcacc 676
            |||||| ||||||||||||||||||||||  || | ||||||||| || ||  ||| |||
Sbjct: 1458 catatctggatttacctcatatctgtgcctgtgtcgctcatctacaaactttgcattacc 1399

                                            
Query: 677  atagagcttggcagatttgcagtcagtaacct 708
             || ||||||||||| ||||| |||| |||||
Sbjct: 1398 gtacagcttggcagacttgcaatcagcaacct 1367
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>gb|AY093110.1| Arabidopsis thaliana CTP-synthetase, putative (At3g12670) mRNA,
            complete cds
          Length = 2056

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 617  catatcaggatttacctcatatctgtgccgatgcctctcatctacgaagttgacatcacc 676
            |||||| ||||||||||||||||||||||  || | ||||||||| || ||  ||| |||
Sbjct: 1507 catatctggatttacctcatatctgtgcctgtgtcgctcatctacaaactttgcattacc 1448

                                            
Query: 677  atagagcttggcagatttgcagtcagtaacct 708
             || ||||||||||| ||||| |||| |||||
Sbjct: 1447 gtacagcttggcagacttgcaatcagcaacct 1416
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>ref|NM_129042.1| Arabidopsis thaliana CTP synthase/ catalytic AT2G34890 mRNA, complete
            cds
          Length = 1794

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 615  accatatcaggatttacctcatatctgtgccgatgcctctcatc 658
            |||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 1463 accatatcaggattcacctcatatctatggcgatgcctttcatc 1420
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>ref|NM_102819.2| Arabidopsis thaliana CTP synthase/ catalytic AT1G30820 mRNA, complete
            cds
          Length = 2472

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 615  accatatcaggatttacctcatatctgtgccgatgcctctcatctac 661
            ||||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1794 accatgtccggattcacctcgtatctgtgacgatgcctctcatctac 1748
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>gb|BT013487.1| Lycopersicon esculentum clone 132171F, mRNA sequence
          Length = 2418

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 630  acctcatatctgtgccgatgcctctcatcta 660
            |||||||||||||| ||||||||||||||||
Sbjct: 1582 acctcatatctgtgtcgatgcctctcatcta 1552
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>emb|BX813942.1|CNS0AASW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB49ZC05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2201

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 615  accatatcaggatttacctcatatctgtgccgatgcctctcatctac 661
            ||||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1696 accatgtccggattcacctcgtatctgtgacgatgcctctcatctac 1650
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>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0006H05
          Length = 154821

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                          
Query: 563    tccagtctcgtccttgccaacaaactgaagtccggcattttcaaatgctggcaccatatc 622
              |||| |||| ||||||||||||||   ||||||||| || |||||  |||| ||||| ||
Sbjct: 122373 tccactctcatccttgccaacaaatgaaagtccggccttctcaaactctggtaccatttc 122314

                         
Query: 623    aggatttacct 633
              |||||||||||
Sbjct: 122313 aggatttacct 122303
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>gb|BC085949.1| Rattus norvegicus cytidine triphosphate synthase II, mRNA (cDNA clone
            MGC:95203 IMAGE:7132135), complete cds
          Length = 2153

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 495  aactccggatggaattggacgccgatgaa 523
            ||||| |||||||||||||||||||||||
Sbjct: 1676 aactcaggatggaattggacgccgatgaa 1648
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>gb|BC085358.1| Rattus norvegicus cytidine triphosphate synthase II, mRNA (cDNA
           clone IMAGE:7300883), partial cds
          Length = 1220

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 495 aactccggatggaattggacgccgatgaa 523
           ||||| |||||||||||||||||||||||
Sbjct: 778 aactcaggatggaattggacgccgatgaa 750
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>ref|NM_001034998.1| Rattus norvegicus cytidine triphosphate synthase II (Ctps2), mRNA
          Length = 2153

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 495  aactccggatggaattggacgccgatgaa 523
            ||||| |||||||||||||||||||||||
Sbjct: 1676 aactcaggatggaattggacgccgatgaa 1648
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>gb|AC004135.1|AC004135 Genomic sequence for Arabidopsis thaliana BAC T17H7 from Chromosome 1,
             complete sequence
          Length = 73805

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 629   tacctcatatctgtgccgatgcctctcatctac 661
             |||||| |||||||| |||||||||||||||||
Sbjct: 25923 tacctcgtatctgtgacgatgcctctcatctac 25955
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>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06,
              complete sequence
          Length = 160907

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 426    tccagttgcccgcacgctgcagcgattagtcc 457
              ||||||||||| |||| |||||||||||||||
Sbjct: 110101 tccagttgcccacacgatgcagcgattagtcc 110070



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 426   tccagttgcccgcacgctgcagcgattagtcc 457
             ||||||||||| |||| |||||||||||||||
Sbjct: 64299 tccagttgcccacacgatgcagcgattagtcc 64330
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 426      tccagttgcccgcacgctgcagcgattagtcc 457
                ||||||||||| |||| |||||||||||||||
Sbjct: 28177426 tccagttgcccacacgatgcagcgattagtcc 28177395



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 426      tccagttgcccgcacgctgcagcgattagtcc 457
                ||||||||||| |||| |||||||||||||||
Sbjct: 28131624 tccagttgcccacacgatgcagcgattagtcc 28131655
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>ref|XM_775504.1| PREDICTED: Strongylocentrotus purpuratus similar to CTP synthase
           (UTP--ammonia ligase) (CTP synthetase) (LOC575088), mRNA
          Length = 1161

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 630 acctcatatctgtgccgatgcctctcatctacgaa 664
           |||||||||||||| | ||||||||| ||||||||
Sbjct: 824 acctcatatctgtgtctatgcctctcttctacgaa 790
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>ref|XM_788608.1| PREDICTED: Strongylocentrotus purpuratus similar to predicted CDS,
            zn-finger, CCHC type and RNA-directed DNA polymerase  and
            Integrase, catalytic domain containing protein family
            member (XS258) (LOC588949), partial mRNA
          Length = 3583

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 653  ctcatctacgaagttgacatca 674
            ||||||||||||||||||||||
Sbjct: 1530 ctcatctacgaagttgacatca 1509
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>ref|XM_774974.1| PREDICTED: Strongylocentrotus purpuratus similar to predicted CDS,
            zn-finger, CCHC type and RNA-directed DNA polymerase  and
            Integrase, catalytic domain containing protein family
            member (XS258) (LOC574623), mRNA
          Length = 2631

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 653  ctcatctacgaagttgacatca 674
            ||||||||||||||||||||||
Sbjct: 1269 ctcatctacgaagttgacatca 1248
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>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6
          Length = 293250

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 482   aggcgttgacttgaactccggatggaattg 511
             |||| ||||||||||||| |||||||||||
Sbjct: 40559 aggccttgacttgaactctggatggaattg 40530
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 495     aactccggatggaattggacgccgatgaagaacgggtg 532
               ||||||||||||||||||  | |||||||||| |||||
Sbjct: 1552340 aactccggatggaattgggtggcgatgaagaaggggtg 1552377
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>ref|NM_118151.3| Arabidopsis thaliana CTP synthase/ catalytic AT4G20320 mRNA, complete
            cds
          Length = 2348

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 542  ttcaatgatctccattctctgtccagtctcgtc 574
            ||||||||||||||||| ||| || ||||||||
Sbjct: 1623 ttcaatgatctccattcgctgccctgtctcgtc 1591
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>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence
          Length = 410554

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 497    ctccggatggaattggacgccgatg 521
              |||||||||||| ||||||||||||
Sbjct: 340092 ctccggatggaactggacgccgatg 340116
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>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence
          Length = 202234

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    cacagaagacaggcaagaccc 232
              |||||||||||||||||||||
Sbjct: 173952 cacagaagacaggcaagaccc 173932
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>gb|AC099578.8| Mus musculus chromosome 10, clone RP23-182D17, complete sequence
          Length = 176161

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 701   agtaaccttgaaaaatgttct 721
             |||||||||||||||||||||
Sbjct: 83005 agtaaccttgaaaaatgttct 82985
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>emb|AL121982.19|HS1185H19 Human DNA sequence from clone RP5-1185H19 on chromosome 1p13.1-13.3
             Contains two novel genes and a CpG island, complete
             sequence
          Length = 104780

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 598   cattttcaaatgctggcacca 618
             |||||||||||||||||||||
Sbjct: 69385 cattttcaaatgctggcacca 69405
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>gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosome 12, complete
             sequence
          Length = 202583

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 212   cacagaagacaggcaagaccc 232
             |||||||||||||||||||||
Sbjct: 93405 cacagaagacaggcaagaccc 93385
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>gb|DQ397608.1| Cenarchaeum symbiosum clone C12B02, complete sequence
          Length = 36797

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 495  aactccggatggaattggacgccgatgaagaac 527
            |||||||||||||| || |||||||| ||||||
Sbjct: 6971 aactccggatggaactgcacgccgataaagaac 7003
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>emb|X01423.1|OCUTGLOB Rabbit uteroglobin gene
          Length = 6568

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 208  ggaccacagaagacaggcaag 228
            |||||||||||||||||||||
Sbjct: 5290 ggaccacagaagacaggcaag 5310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,928,576
Number of Sequences: 3902068
Number of extensions: 5928576
Number of successful extensions: 102190
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102019
Number of HSP's gapped (non-prelim): 168
length of query: 745
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 722
effective length of database: 17,143,297,704
effective search space: 12377460942288
effective search space used: 12377460942288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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