Clone Name	rbags17p07
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clon...	365	1e-97
2	dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clon...	365	1e-97
3	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	204	3e-49
4	dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D...	204	3e-49
5	ref|NM_193993.1| Oryza sativa (japonica cultivar-group), predic...	147	6e-32
6	dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic D...	54	6e-04
7	gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C...	44	0.60
8	ref|XM_649970.1| Entamoeba histolytica HM-1:IMSS DEAD/DEAH box h...	42	2.4
9	ref|NM_205069.1| Gallus gallus integrin, alpha 1 (ITGA1), mRNA	42	2.4
10	emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 i...	42	2.4
11	gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Can...	42	2.4
12	dbj|AB000470.1| Gallus gallus mRNA for alpha1 integrin, complete...	42	2.4
13	gb|AY772391.1| Danio rerio protocadherin 15b mRNA, complete cds	40	9.4
14	gb|AC120989.2| Oryza sativa (japonica cultivar-group) chromosome...	40	9.4
15	gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome...	40	9.4
16	gb|AC143357.1| Pan troglodytes BAC clone RP43-171L24 from 7, com...	40	9.4
17	gb|AC006029.2| Homo sapiens BAC clone GS1-195F7 from 7q31.2-q32,...	40	9.4
18	ref|XM_503978.1| Yarrowia lipolytica CLIB122, YALI0E15334g predi...	40	9.4
19	emb|AL359708.8| Human DNA sequence from clone RP11-171O14 on chr...	40	9.4
20	emb|AL359741.9| Human DNA sequence from clone RP11-161P17 on chr...	40	9.4
21	emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chr...	40	9.4
22	emb|AL137250.17| Human DNA sequence from clone RP11-347L8 on chr...	40	9.4
23	gb|CP000089.1| Dechloromonas aromatica RCB, complete genome	40	9.4
24	emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp...	40	9.4
25	emb|BX510655.18| Zebrafish DNA sequence from clone DKEY-94J16 in...	40	9.4
26	emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chro...	40	9.4
27	gb|AC158746.8| Mus musculus chromosome 1, clone RP23-50E17, comp...	40	9.4
28	emb|BX957226.10| Zebrafish DNA sequence from clone CH211-110P13 ...	40	9.4
29	gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome	40	9.4
30	gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence	40	9.4
31	gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer...	40	9.4
32	gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Canc...	40	9.4
33	gb|AC020687.6| Homo sapiens chromosome 15, clone RP11-648K4, com...	40	9.4
34	gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	9.4
35	gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome	40	9.4
36	gb|AC148671.1| Macaca mulatta Major Histocompatibility Complex B...	40	9.4
37	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
38	emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 i...	40	9.4
39	ref|NM_001012486.1| Danio rerio protocadherin 15b (pcdh15b), mRNA	40	9.4
40	dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding pr...	40	9.4
41	ref|NM_211718.1| Eremothecium gossypii AGL010Wp (AGL010W), mRNA	40	9.4
42	emb|BX537311.3| Mouse DNA sequence from clone RP24-315O23 on chr...	40	9.4
43	emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chro...	40	9.4
44	emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ...	40	9.4
45	emb|X94354.1|HSCGMPPDE H.sapiens DNA for Cone cGMP-PDE gene	40	9.4

---

>dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G03, full
            insert sequence
          Length = 1683

 Score =  365 bits (184), Expect = 1e-97
 Identities = 325/372 (87%)
 Strand = Plus / Minus

                                                                        
Query: 316  cacgaccatcaagacggagaattatgtagacatcttcaccaggagtgacaccttccgatt 375
            |||||||||| |  ||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 1299 cacgaccatccaatcggaggattatatagacatcttcaccgggagtgacaccttcagact 1240

                                                                        
Query: 376  cttgctgatcacgtatccaactttcccattgttctggagagacaatatcggctttaaatc 435
            ||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 1239 cttgctggtcacgtatccaactttcccattgttcaggagagacaatatcagccttaaatc 1180

                                                                        
Query: 436  gaacctcggctctgagtcgtgattttgccgcaatagattcagtacgtttttcaaagtcgc 495
            |  | || ||| | |  |||||||| || ||||||||||||||||| || ||||||||  
Sbjct: 1179 gctcttcagcttttaaccgtgatttcgctgcaatagattcagtacgcttctcaaagtcat 1120

                                                                        
Query: 496  ccccaattgaaggagctgatgcagcagatcttgtagtaccgaagccttttggtttgcctt 555
            |||||| |||||||||||||||||||||||||| | | || |||||| |||| || | ||
Sbjct: 1119 ccccaactgaaggagctgatgcagcagatcttgaacttccaaagcctcttggcttacttt 1060

                                                                        
Query: 556  ggactttttgtgaagcaccaaagatcacaggaattagaagaacgcctcgtttgagcagtt 615
            || |||| || |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1059 gggctttctgagaagcaccaaagatcacaggaattagaagaacacctcgtttcagcagtt 1000

                                                                        
Query: 616  cagttcggtacctctcagctctttgcattgcttgagtaacagatgcttttgaacctgcca 675
            |||| || || ||||||||||||||||||||| ||||||  |||||||||||||||||||
Sbjct: 999  cagtccgatatctctcagctctttgcattgctcgagtaatggatgcttttgaacctgcca 940

                        
Query: 676  atataactggcc 687
             |||||||||||
Sbjct: 939  gtataactggcc 928



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 246  cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 305
            |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 1387 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 1328

                       
Query: 306  tttggcatgcc 316
            |||||||||||
Sbjct: 1327 tttggcatgcc 1317

---

>dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G10, full
            insert sequence
          Length = 1542

 Score =  365 bits (184), Expect = 1e-97
 Identities = 325/372 (87%)
 Strand = Plus / Minus

                                                                        
Query: 316  cacgaccatcaagacggagaattatgtagacatcttcaccaggagtgacaccttccgatt 375
            |||||||||| |  ||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 1301 cacgaccatccaatcggaggattatatagacatcttcaccgggagtgacaccttcagact 1242

                                                                        
Query: 376  cttgctgatcacgtatccaactttcccattgttctggagagacaatatcggctttaaatc 435
            ||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 1241 cttgctggtcacgtatccaactttcccattgttcaggagagacaatatcagccttaaatc 1182

                                                                        
Query: 436  gaacctcggctctgagtcgtgattttgccgcaatagattcagtacgtttttcaaagtcgc 495
            |  | || ||| | |  |||||||| || ||||||||||||||||| || ||||||||  
Sbjct: 1181 gctcttcagcttttaaccgtgatttcgctgcaatagattcagtacgcttctcaaagtcat 1122

                                                                        
Query: 496  ccccaattgaaggagctgatgcagcagatcttgtagtaccgaagccttttggtttgcctt 555
            |||||| |||||||||||||||||||||||||| | | || |||||| |||| || | ||
Sbjct: 1121 ccccaactgaaggagctgatgcagcagatcttgaacttccaaagcctcttggcttacttt 1062

                                                                        
Query: 556  ggactttttgtgaagcaccaaagatcacaggaattagaagaacgcctcgtttgagcagtt 615
            || |||| || |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1061 gggctttctgagaagcaccaaagatcacaggaattagaagaacacctcgtttcagcagtt 1002

                                                                        
Query: 616  cagttcggtacctctcagctctttgcattgcttgagtaacagatgcttttgaacctgcca 675
            |||| || || ||||||||||||||||||||| ||||||  |||||||||||||||||||
Sbjct: 1001 cagtccgatatctctcagctctttgcattgctcgagtaatggatgcttttgaacctgcca 942

                        
Query: 676  atataactggcc 687
             |||||||||||
Sbjct: 941  gtataactggcc 930



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 246  cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 305
            |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 1389 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 1330

                       
Query: 306  tttggcatgcc 316
            |||||||||||
Sbjct: 1329 tttggcatgcc 1319

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  204 bits (103), Expect = 3e-49
 Identities = 166/187 (88%)
 Strand = Plus / Plus

                                                                            
Query: 496      ccccaattgaaggagctgatgcagcagatcttgtagtaccgaagccttttggtttgcctt 555
                |||||| |||||||||||||||||||||||||| | | || |||||| |||| || | ||
Sbjct: 14491691 ccccaactgaaggagctgatgcagcagatcttgaacttccaaagcctcttggcttacttt 14491750

                                                                            
Query: 556      ggactttttgtgaagcaccaaagatcacaggaattagaagaacgcctcgtttgagcagtt 615
                || |||| || |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 14491751 gggctttctgagaagcaccaaagatcacaggaattagaagaacacctcgtttcagcagtt 14491810

                                                                            
Query: 616      cagttcggtacctctcagctctttgcattgcttgagtaacagatgcttttgaacctgcca 675
                |||| || || ||||||||||||||||||||| ||||||  |||||||||||||||||||
Sbjct: 14491811 cagtccgatatctctcagctctttgcattgctcgagtaatggatgcttttgaacctgcca 14491870

                       
Query: 676      atataac 682
                 ||||||
Sbjct: 14491871 gtataac 14491877



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                            
Query: 316      cacgaccatcaagacggagaattatgtagacatcttcaccaggagtgacaccttccgatt 375
                |||||||||| |  ||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 14490161 cacgaccatccaatcggaggattatatagacatcttcaccgggagtgacaccttcagact 14490220

                                      
Query: 376      cttgctgatcacgtatccaact 397
                ||||||| ||||||||||||||
Sbjct: 14490221 cttgctggtcacgtatccaact 14490242



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                            
Query: 396      ctttcccattgttctggagagacaatatcggctttaaatcgaacctcggctctgagtcgt 455
                |||||||||||||| |||||||||||||| || ||||||||  | || ||| | |  |||
Sbjct: 14491480 ctttcccattgttcaggagagacaatatcagccttaaatcgctcttcagcttttaaccgt 14491539

                                                      
Query: 456      gattttgccgcaatagattcagtacgtttttcaaagtc 493
                ||||| || ||||||||||||||||| || ||||||||
Sbjct: 14491540 gatttcgctgcaatagattcagtacgcttctcaaagtc 14491577



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 246      cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 305
                |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 14489851 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 14489910

                           
Query: 306      tttggcatgcc 316
                |||||||||||
Sbjct: 14489911 tttggcatgcc 14489921

---

>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0514H03
          Length = 167230

 Score =  204 bits (103), Expect = 3e-49
 Identities = 166/187 (88%)
 Strand = Plus / Plus

                                                                         
Query: 496   ccccaattgaaggagctgatgcagcagatcttgtagtaccgaagccttttggtttgcctt 555
             |||||| |||||||||||||||||||||||||| | | || |||||| |||| || | ||
Sbjct: 51004 ccccaactgaaggagctgatgcagcagatcttgaacttccaaagcctcttggcttacttt 51063

                                                                         
Query: 556   ggactttttgtgaagcaccaaagatcacaggaattagaagaacgcctcgtttgagcagtt 615
             || |||| || |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 51064 gggctttctgagaagcaccaaagatcacaggaattagaagaacacctcgtttcagcagtt 51123

                                                                         
Query: 616   cagttcggtacctctcagctctttgcattgcttgagtaacagatgcttttgaacctgcca 675
             |||| || || ||||||||||||||||||||| ||||||  |||||||||||||||||||
Sbjct: 51124 cagtccgatatctctcagctctttgcattgctcgagtaatggatgcttttgaacctgcca 51183

                    
Query: 676   atataac 682
              ||||||
Sbjct: 51184 gtataac 51190



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                         
Query: 316   cacgaccatcaagacggagaattatgtagacatcttcaccaggagtgacaccttccgatt 375
             |||||||||| |  ||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 49474 cacgaccatccaatcggaggattatatagacatcttcaccgggagtgacaccttcagact 49533

                                   
Query: 376   cttgctgatcacgtatccaact 397
             ||||||| ||||||||||||||
Sbjct: 49534 cttgctggtcacgtatccaact 49555



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                         
Query: 396   ctttcccattgttctggagagacaatatcggctttaaatcgaacctcggctctgagtcgt 455
             |||||||||||||| |||||||||||||| || ||||||||  | || ||| | |  |||
Sbjct: 50793 ctttcccattgttcaggagagacaatatcagccttaaatcgctcttcagcttttaaccgt 50852

                                                   
Query: 456   gattttgccgcaatagattcagtacgtttttcaaagtc 493
             ||||| || ||||||||||||||||| || ||||||||
Sbjct: 50853 gatttcgctgcaatagattcagtacgcttctcaaagtc 50890



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                         
Query: 246   cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 305
             |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 49164 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 49223

                        
Query: 306   tttggcatgcc 316
             |||||||||||
Sbjct: 49224 tttggcatgcc 49234

---

>ref|NM_193993.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 813

 Score =  147 bits (74), Expect = 6e-32
 Identities = 107/118 (90%)
 Strand = Plus / Minus

                                                                       
Query: 554 ttggactttttgtgaagcaccaaagatcacaggaattagaagaacgcctcgtttgagcag 613
           |||| |||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 765 ttgggctttctgagaagcaccaaagatcacaggaattagaagaacacctcgtttcagcag 706

                                                                     
Query: 614 ttcagttcggtacctctcagctctttgcattgcttgagtaacagatgcttttgaacct 671
           |||||| || || ||||||||||||||||||||| ||||||  |||||||||||||||
Sbjct: 705 ttcagtccgatatctctcagctctttgcattgctcgagtaatggatgcttttgaacct 648

---

>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025H06
          Length = 151547

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 246    cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 305
              |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 151248 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 151307

                         
Query: 306    tttggcatgcc 316
              |||||||||||
Sbjct: 151308 tttggcatgcc 151318

---

>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177115

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 539   gccttttggtttgccttggacttttt 564
             |||||||||||||||||| |||||||
Sbjct: 15254 gccttttggtttgccttgtacttttt 15229

---

>ref|XM_649970.1| Entamoeba histolytica HM-1:IMSS DEAD/DEAH box helicase, putative
            (37.t00031) partial mRNA
          Length = 1995

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 631  cagctctttgcattgcttgag 651
            |||||||||||||||||||||
Sbjct: 1045 cagctctttgcattgcttgag 1025

---

>ref|NM_205069.1| Gallus gallus integrin, alpha 1 (ITGA1), mRNA
          Length = 3926

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 284  ttccttcaaaatatcattcca 304
            |||||||||||||||||||||
Sbjct: 2950 ttccttcaaaatatcattcca 2970

---

>emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 in linkage group 14,
             complete sequence
          Length = 149672

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    tattgtaattaaaatgttgtg 41
             |||||||||||||||||||||
Sbjct: 63284 tattgtaattaaaatgttgtg 63304

---

>gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 216841

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     ctattgtaattaaaatgttgt 40
              |||||||||||||||||||||
Sbjct: 159481 ctattgtaattaaaatgttgt 159461

---

>dbj|AB000470.1| Gallus gallus mRNA for alpha1 integrin, complete cds
          Length = 3926

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 284  ttccttcaaaatatcattcca 304
            |||||||||||||||||||||
Sbjct: 2950 ttccttcaaaatatcattcca 2970

---

>gb|AY772391.1| Danio rerio protocadherin 15b mRNA, complete cds
          Length = 6059

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   aagaccttcacctctgtttt 104
            ||||||||||||||||||||
Sbjct: 3723 aagaccttcacctctgtttt 3742

---

>gb|AC120989.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0032D15,
              complete sequence
          Length = 161968

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    aacatgatggtcaatctctg 164
              ||||||||||||||||||||
Sbjct: 136227 aacatgatggtcaatctctg 136208

---

>gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1171_H02,
            complete sequence
          Length = 109969

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  aacatgatggtcaatctctg 164
            ||||||||||||||||||||
Sbjct: 7854 aacatgatggtcaatctctg 7835

---

>gb|AC143357.1| Pan troglodytes BAC clone RP43-171L24 from 7, complete sequence
          Length = 181482

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    ttatgtagacatcttcaccaggag 360
              ||||| ||||||||||||||||||
Sbjct: 113028 ttatgaagacatcttcaccaggag 113051

---

>gb|AC006029.2| Homo sapiens BAC clone GS1-195F7 from 7q31.2-q32, complete sequence
          Length = 143851

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   ttatgtagacatcttcaccaggag 360
             ||||| ||||||||||||||||||
Sbjct: 36558 ttatgaagacatcttcaccaggag 36581

---

>ref|XM_503978.1| Yarrowia lipolytica CLIB122, YALI0E15334g predicted mRNA
          Length = 6225

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 628  tctcagctctttgcattgct 647
            ||||||||||||||||||||
Sbjct: 2714 tctcagctctttgcattgct 2733

---

>emb|AL359708.8| Human DNA sequence from clone RP11-171O14 on chromosome 13 Contains
            the 5' end of the TGDS gene for dTDP-D-glucose
            4,6-dehydratase, a novel gene (possible ortholog of mouse
            AB041545), the gene for a novel protein similar to NADH
            dehydrogenase (ubiquinone) 1 alpha subcomplex 3 9kDa
            (NDUFA3) and a CpG island, complete sequence
          Length = 50083

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  ttcaaaatatcattccagtt 307
            ||||||||||||||||||||
Sbjct: 5063 ttcaaaatatcattccagtt 5044

---

>emb|AL359741.9| Human DNA sequence from clone RP11-161P17 on chromosome 13 Contains a
              novel pseudogene, complete sequence
          Length = 139877

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    aacatgatggtcaatctctg 164
              ||||||||||||||||||||
Sbjct: 126850 aacatgatggtcaatctctg 126831

---

>emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chromosome 10 Contains the
              C10orf3 gene for chromosome 10 open reading frame 3, the
              RBP4 gene for retinol binding protein 4 (plasma), the 5'
              end of the PDE6C gene for phosphodiesterase 6C
              (cGMP-specific, cone, alpha prime), the GPR120 gene for G
              protein-coupled receptor 120 and three CpG islands,
              complete sequence
          Length = 163964

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    ccttcaaaatatcattccag 305
              ||||||||||||||||||||
Sbjct: 151151 ccttcaaaatatcattccag 151132

---

>emb|AL137250.17| Human DNA sequence from clone RP11-347L8 on chromosome 13, complete
             sequence
          Length = 110733

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 408   tctggagagacaatatcggcttta 431
             |||||||||||||||| |||||||
Sbjct: 96524 tctggagagacaatatgggcttta 96501

---

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 621    cggtacctctcagctctttg 640
              ||||||||||||||||||||
Sbjct: 318453 cggtacctctcagctctttg 318472

---

>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 66      cctcacttcttagagaaata 85
               ||||||||||||||||||||
Sbjct: 1194192 cctcacttcttagagaaata 1194211

---

>emb|BX510655.18| Zebrafish DNA sequence from clone DKEY-94J16 in linkage group 5, complete
              sequence
          Length = 205761

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     tctgtttttgcataagaact 116
              ||||||||||||||||||||
Sbjct: 120213 tctgtttttgcataagaact 120232

---

>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two
              novel genes, the 5' end of the Accn1 gene for neuronal
              amiloride-sensitive cation channel 1 (degenerin) and the
              Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and
              7, complete sequence
          Length = 223726

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    atgatggtcaatctctgtgc 167
              ||||||||||||||||||||
Sbjct: 195825 atgatggtcaatctctgtgc 195844

---

>gb|AC158746.8| Mus musculus chromosome 1, clone RP23-50E17, complete sequence
          Length = 245991

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 649    gagtaacagatgcttttgaa 668
              ||||||||||||||||||||
Sbjct: 105109 gagtaacagatgcttttgaa 105128

---

>emb|BX957226.10| Zebrafish DNA sequence from clone CH211-110P13 in linkage group 5,
              complete sequence
          Length = 149414

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     tctgtttttgcataagaact 116
              ||||||||||||||||||||
Sbjct: 103930 tctgtttttgcataagaact 103949

---

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 509    agctgatgcagcagatcttg 528
              ||||||||||||||||||||
Sbjct: 887453 agctgatgcagcagatcttg 887434

---

>gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence
          Length = 179810

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ggagaattatgtagacatct 350
              ||||||||||||||||||||
Sbjct: 134386 ggagaattatgtagacatct 134367

---

>gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152210

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    attatatcctattgtaattaaaat 35
             |||||||||| |||||||||||||
Sbjct: 72693 attatatccttttgtaattaaaat 72716

---

>gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165139

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     attatatcctattgtaattaaaat 35
              |||||||||| |||||||||||||
Sbjct: 141930 attatatccttttgtaattaaaat 141907

---

>gb|AC020687.6| Homo sapiens chromosome 15, clone RP11-648K4, complete sequence
          Length = 169571

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 634    ctctttgcattgcttgagta 653
              ||||||||||||||||||||
Sbjct: 135262 ctctttgcattgcttgagta 135243

---

>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 507    ggagctgatgcagcagatct 526
              ||||||||||||||||||||
Sbjct: 702841 ggagctgatgcagcagatct 702860

---

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 210     ggaagaaaacgaaacccatatacacata 237
               ||||||||| ||||| ||||||||||||
Sbjct: 4937456 ggaagaaaaagaaacgcatatacacata 4937483

---

>gb|AC148671.1| Macaca mulatta Major Histocompatibility Complex BAC MMU065H09, complete
             sequence
          Length = 177726

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   tagacatcttcaccaggagt 361
             ||||||||||||||||||||
Sbjct: 86703 tagacatcttcaccaggagt 86722

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 145     aacatgatggtcaatctctg 164
               ||||||||||||||||||||
Sbjct: 9025857 aacatgatggtcaatctctg 9025838

---

>emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 in linkage group 12,
             complete sequence
          Length = 172778

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    aagaccttcacctctgtttt 104
             ||||||||||||||||||||
Sbjct: 86523 aagaccttcacctctgtttt 86504

---

>ref|NM_001012486.1| Danio rerio protocadherin 15b (pcdh15b), mRNA
          Length = 6059

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   aagaccttcacctctgtttt 104
            ||||||||||||||||||||
Sbjct: 3723 aagaccttcacctctgtttt 3742

---

>dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding protein4, complete cds
          Length = 173042

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   ccttcaaaatatcattccag 305
             ||||||||||||||||||||
Sbjct: 76761 ccttcaaaatatcattccag 76780

---

>ref|NM_211718.1| Eremothecium gossypii AGL010Wp (AGL010W), mRNA
          Length = 2406

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 507 ggagctgatgcagcagatct 526
           ||||||||||||||||||||
Sbjct: 51  ggagctgatgcagcagatct 70

---

>emb|BX537311.3| Mouse DNA sequence from clone RP24-315O23 on chromosome 4, complete
            sequence
          Length = 6715

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  acccatatacacatagtttt 242
            ||||||||||||||||||||
Sbjct: 4087 acccatatacacatagtttt 4068

---

>emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chromosome 4, complete
            sequence
          Length = 202412

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  acccatatacacatagtttt 242
            ||||||||||||||||||||
Sbjct: 2093 acccatatacacatagtttt 2074

---

>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 628     tctcagctctttgcattgct 647
               ||||||||||||||||||||
Sbjct: 1824564 tctcagctctttgcattgct 1824545

---

>emb|X94354.1|HSCGMPPDE H.sapiens DNA for Cone cGMP-PDE gene
          Length = 13975

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  ccttcaaaatatcattccag 305
            ||||||||||||||||||||
Sbjct: 8659 ccttcaaaatatcattccag 8640


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,172,919
Number of Sequences: 3902068
Number of extensions: 6172919
Number of successful extensions: 144004
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143746
Number of HSP's gapped (non-prelim): 258
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---