ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18d24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464897.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-04
2dbj|AK100835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
3dbj|AK099509.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
4dbj|AK061699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
6dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
7dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
8gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, comp... 46 0.15
9gb|AY866493.1| Hordeum vulgare subsp. spontaneum cultivar OSU6 M... 42 2.3
10gb|AY866492.1| Hordeum vulgare subsp. spontaneum cultivar OSU11 ... 42 2.3
11emb|AL355517.12| Human DNA sequence from clone RP11-254A5 on chr... 42 2.3
12emb|CR378677.1| Photobacterium profundum SS9 chromosome 2; segme... 42 2.3
13emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in... 42 2.3
14dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 2.3
15emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, co... 42 2.3
16ref|XM_475671.1| Oryza sativa (japonica cultivar-group), predic... 40 9.0
17gb|AC135497.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
18gb|AY705265.1| HIV-1 isolate Z16_F5 from USA envelope glycoprote... 40 9.0
19gb|AY705264.1| HIV-1 isolate Z16_F3 from USA envelope glycoprote... 40 9.0
20gb|AY705263.1| HIV-1 isolate Z16_F1 from USA envelope glycoprote... 40 9.0
21gb|AY705262.1| HIV-1 isolate Z16_E8 from USA envelope glycoprote... 40 9.0
22gb|AY705260.1| HIV-1 isolate Z16_B9 from USA envelope glycoprote... 40 9.0
23gb|AY705259.1| HIV-1 isolate Z16_B2 from USA envelope glycoprote... 40 9.0
24gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
25gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
26gb|AY623113.1| Homo sapiens origin recognition complex, subunit ... 40 9.0
27ref|XR_003139.1| PREDICTED: Mus musculus similar to Heat shock p... 40 9.0
28ref|XR_004950.1| PREDICTED: Mus musculus similar to Heat shock p... 40 9.0
29gb|AF536886.1| HIV-1 clone PHI patient Z16 from USA isolation-so... 40 9.0
30gb|AF536885.1| HIV-1 clone PHI patient Z16 from USA isolation-so... 40 9.0
31gb|AC003085.2| Homo sapiens BAC clone CTB-94H21 from 7, complete... 40 9.0
32gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, com... 40 9.0
33emb|AL591463.7| Human DNA sequence from clone RP11-275A6 on chro... 40 9.0
34emb|AL451126.18| Human DNA sequence from clone RP11-106G15 on ch... 40 9.0
35emb|AL357514.19| Human DNA sequence from clone RP1-105O18 on chr... 40 9.0
36emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome;... 40 9.0
37tpg|BK000877.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M271,... 40 9.0
38emb|CR388161.7| Zebrafish DNA sequence from clone CH211-288B17 i... 40 9.0
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
41dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
42gb|AC007971.3| Homo sapiens BAC clone RP11-510C23 from 2, comple... 40 9.0
43gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
44emb|AL606997.3|OSJN00115 Oryza sativa genomic DNA, chromosome 4,... 40 9.0
45gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, compl... 40 9.0 
>ref|XM_464897.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1966

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 450  aggtcattccttgataagatggctacgatccctgcaagaggaatcctcatcagttcgtct 509
            |||||||| ||||| ||||||||| |||| || |||||||| ||  |||||| ||| |||
Sbjct: 1024 aggtcattacttgacaagatggcttcgattccagcaagagggatgttcatcacttcatct 965

                    
Query: 510  tggaactt 517
            ||||||||
Sbjct: 964  tggaactt 957



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 582 gccattgaaatggaatatggtagatctaggcacagcactgcagattctggggtcataggc 641
           ||||| ||||||||  |||| ||||||||| | || | |||||||||||  ||||||| |
Sbjct: 889 gccatcgaaatggagcatggaagatctaggtagagtagtgcagattctgtagtcatagtc 830

                       
Query: 642 aagattgtgagc 653
           ||| ||||||||
Sbjct: 829 aagcttgtgagc 818
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>dbj|AK100835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D22, full
            insert sequence
          Length = 2036

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 450  aggtcattccttgataagatggctacgatccctgcaagaggaatcctcatcagttcgtct 509
            |||||||| ||||| ||||||||| |||| || |||||||| ||  |||||| ||| |||
Sbjct: 1024 aggtcattacttgacaagatggcttcgattccagcaagagggatgttcatcacttcatct 965

                    
Query: 510  tggaactt 517
            ||||||||
Sbjct: 964  tggaactt 957



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 582 gccattgaaatggaatatggtagatctaggcacagcactgcagattctggggtcataggc 641
           ||||| ||||||||  |||| ||||||||| | || | |||||||||||  ||||||| |
Sbjct: 889 gccatcgaaatggagcatggaagatctaggtagagtagtgcagattctgtagtcatagtc 830

                       
Query: 642 aagattgtgagc 653
           ||| ||||||||
Sbjct: 829 aagcttgtgagc 818
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>dbj|AK099509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029E15, full
           insert sequence
          Length = 1276

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 450 aggtcattccttgataagatggctacgatccctgcaagaggaatcctcatcagttcgtct 509
           |||||||| ||||| ||||||||| |||| || |||||||| ||  |||||| ||| |||
Sbjct: 344 aggtcattacttgacaagatggcttcgattccagcaagagggatgttcatcacttcatct 285

                   
Query: 510 tggaactt 517
           ||||||||
Sbjct: 284 tggaactt 277



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 582 gccattgaaatggaatatggtagatctaggcacagcactgcagattctggggtcataggc 641
           ||||| ||||||||  |||| ||||||||| | || | |||||||||||  ||||||| |
Sbjct: 209 gccatcgaaatggagcatggaagatctaggtagagtagtgcagattctgtagtcatagtc 150

                       
Query: 642 aagattgtgagc 653
           ||| ||||||||
Sbjct: 149 aagcttgtgagc 138
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>dbj|AK061699.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-D06, full
           insert sequence
          Length = 1345

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 450 aggtcattccttgataagatggctacgatccctgcaagaggaatcctcatcagttcgtct 509
           |||||||| ||||| ||||||||| |||| || |||||||| ||  |||||| ||| |||
Sbjct: 349 aggtcattacttgacaagatggcttcgattccagcaagagggatgttcatcacttcatct 290

                   
Query: 510 tggaactt 517
           ||||||||
Sbjct: 289 tggaactt 282



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 582 gccattgaaatggaatatggtagatctaggcacagcactgcagattctggggtcataggc 641
           ||||| ||||||||  |||| ||||||||| | || | |||||||||||  ||||||| |
Sbjct: 214 gccatcgaaatggagcatggaagatctaggtagagtagtgcagattctgtagtcatagtc 155

                       
Query: 642 aagattgtgagc 653
           ||| ||||||||
Sbjct: 154 aagcttgtgagc 143
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                           
Query: 582     gccattgaaatggaatatggtagatctaggcacagcactgcagattctggggtcataggc 641
               ||||| ||||||||  |||| ||||||||| | || | |||||||||||  ||||||| |
Sbjct: 9085812 gccatcgaaatggagcatggaagatctaggtagagtagtgcagattctgtagtcatagtc 9085753

                           
Query: 642     aagattgtgagc 653
               ||| ||||||||
Sbjct: 9085752 aagcttgtgagc 9085741
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>dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1178F07
          Length = 144454

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                          
Query: 582    gccattgaaatggaatatggtagatctaggcacagcactgcagattctggggtcataggc 641
              ||||| ||||||||  |||| ||||||||| | || | |||||||||||  ||||||| |
Sbjct: 126258 gccatcgaaatggagcatggaagatctaggtagagtagtgcagattctgtagtcatagtc 126199

                          
Query: 642    aagattgtgagc 653
              ||| ||||||||
Sbjct: 126198 aagcttgtgagc 126187
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>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0060K08
          Length = 159626

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                          
Query: 582    gccattgaaatggaatatggtagatctaggcacagcactgcagattctggggtcataggc 641
              ||||| ||||||||  |||| ||||||||| | || | |||||||||||  ||||||| |
Sbjct: 158421 gccatcgaaatggagcatggaagatctaggtagagtagtgcagattctgtagtcatagtc 158362

                          
Query: 642    aagattgtgagc 653
              ||| ||||||||
Sbjct: 158361 aagcttgtgagc 158350
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>gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, complete sequence
          Length = 179350

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 424   agacggcttcttcagataaaatc 446
             |||||||||||||||||||||||
Sbjct: 82861 agacggcttcttcagataaaatc 82839
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>gb|AY866493.1| Hordeum vulgare subsp. spontaneum cultivar OSU6 MADS-box protein
           HvBM5A (BM5A) gene, intron 1
          Length = 2588

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 9   aattatttaggtacagaggaagtag 33
           ||||||||||||| |||||||||||
Sbjct: 486 aattatttaggtatagaggaagtag 510
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>gb|AY866492.1| Hordeum vulgare subsp. spontaneum cultivar OSU11 Caesarea 26-24
           MADS-box protein HvBM5A (BM5A) gene, intron 1
          Length = 2588

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 9   aattatttaggtacagaggaagtag 33
           ||||||||||||| |||||||||||
Sbjct: 486 aattatttaggtatagaggaagtag 510
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>emb|AL355517.12| Human DNA sequence from clone RP11-254A5 on chromosome 10, complete
             sequence
          Length = 171348

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 554   tttcttggctgcctctgccag 574
             |||||||||||||||||||||
Sbjct: 81742 tttcttggctgcctctgccag 81762
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>emb|CR378677.1| Photobacterium profundum SS9 chromosome 2; segment 3/7
          Length = 348759

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 542    ttcagcaaagaatttcttggctgcc 566
              ||||||||||||||||| |||||||
Sbjct: 167187 ttcagcaaagaatttctgggctgcc 167163
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>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13,
              complete sequence
          Length = 258636

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     acattaacagttcagcaactt 115
              |||||||||||||||||||||
Sbjct: 202672 acattaacagttcagcaactt 202652
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 8       taattatttaggtacagagga 28
               |||||||||||||||||||||
Sbjct: 1269497 taattatttaggtacagagga 1269477
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>emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, complete sequence
          Length = 113198

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    acattaacagttcagcaactt 115
             |||||||||||||||||||||
Sbjct: 73895 acattaacagttcagcaactt 73875
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>ref|XM_475671.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 366

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 164 ccgacacggtacaccaatgccaca 187
           |||| |||||||||||||||||||
Sbjct: 132 ccgaaacggtacaccaatgccaca 109
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>gb|AC135497.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0008E02,
              complete sequence
          Length = 152974

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 555    ttcttggctgcctctgccagggca 578
              ||||||||||| ||||||||||||
Sbjct: 136791 ttcttggctgcttctgccagggca 136768
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>gb|AY705265.1| HIV-1 isolate Z16_F5 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AY705264.1| HIV-1 isolate Z16_F3 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AY705263.1| HIV-1 isolate Z16_F1 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AY705262.1| HIV-1 isolate Z16_E8 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AY705260.1| HIV-1 isolate Z16_B9 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AY705259.1| HIV-1 isolate Z16_B2 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0084P24, complete sequence
          Length = 148784

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 555   ttcttggctgcctctgccagggca 578
             ||||||||||| ||||||||||||
Sbjct: 93269 ttcttggctgcttctgccagggca 93292
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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   ccgacacggtacaccaatgccaca 187
             |||| |||||||||||||||||||
Sbjct: 69596 ccgaaacggtacaccaatgccaca 69619
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>gb|AY623113.1| Homo sapiens origin recognition complex, subunit 3-like (yeast) (ORC3L)
             gene, complete cds
          Length = 81082

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 240   tctatcacatacaagataatcaac 263
             ||||||||| ||||||||||||||
Sbjct: 16494 tctatcacaaacaagataatcaac 16471
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>ref|XR_003139.1| PREDICTED: Mus musculus similar to Heat shock protein HSP 90-beta
           (HSP 84) (Tumor-specific transplantation 84 kDa antigen)
           (TSTA) (LOC625309), mRNA
          Length = 667

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 482 tgcaagaggaatcctcatca 501
           ||||||||||||||||||||
Sbjct: 650 tgcaagaggaatcctcatca 631
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>ref|XR_004950.1| PREDICTED: Mus musculus similar to Heat shock protein HSP 90-beta
           (HSP 84) (Tumor-specific transplantation 84 kDa antigen)
           (TSTA) (LOC676656), mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 482 tgcaagaggaatcctcatca 501
           ||||||||||||||||||||
Sbjct: 529 tgcaagaggaatcctcatca 510
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>gb|AF536886.1| HIV-1 clone PHI patient Z16 from USA isolation-source saliva
           envelope glycoprotein (env) gene, partial cds
          Length = 417

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AF536885.1| HIV-1 clone PHI patient Z16 from USA isolation-source plasma
           envelope glycoprotein (env) gene, partial cds
          Length = 417

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 gcactagtggtactagtggcagta 348
           |||||||||||| |||||||||||
Sbjct: 119 gcactagtggtattagtggcagta 96
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>gb|AC003085.2| Homo sapiens BAC clone CTB-94H21 from 7, complete sequence
          Length = 124836

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   ggttctatcacatacaagat 256
             ||||||||||||||||||||
Sbjct: 73436 ggttctatcacatacaagat 73455
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>gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, complete sequence
          Length = 194546

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   ggttctatcacatacaagat 256
             ||||||||||||||||||||
Sbjct: 65249 ggttctatcacatacaagat 65230
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>emb|AL591463.7| Human DNA sequence from clone RP11-275A6 on chromosome 1 Contains the 3'
              end of a novel gene and a novel gene, complete sequence
          Length = 186710

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 420    tcaaagacggcttcttcagataaaatcc 447
              ||||||| |||| |||||||||||||||
Sbjct: 156254 tcaaagaaggctgcttcagataaaatcc 156281
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>emb|AL451126.18| Human DNA sequence from clone RP11-106G15 on chromosome 6 Contains the
             5' end of a gene for a novel protein similar to
             arginyl-tRNA synthetase (arginine-tRNA ligase, EC
             6.1.1.19) and the 5' end of the ORC3L gene for origin
             recognition complex, subunit 3-like (yeast), complete
             sequence
          Length = 106700

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 240   tctatcacatacaagataatcaac 263
             ||||||||| ||||||||||||||
Sbjct: 61944 tctatcacaaacaagataatcaac 61921
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>emb|AL357514.19| Human DNA sequence from clone RP1-105O18 on chromosome 6 Contains a
             novel gene and a CpG island, complete sequence
          Length = 140630

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    taggtacagaggaagtagat 35
             ||||||||||||||||||||
Sbjct: 10673 taggtacagaggaagtagat 10692
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>emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome; segment 6/7
          Length = 348071

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 562    ctgcctctgccagggcaggtgcca 585
              |||||||||||||||||| |||||
Sbjct: 122563 ctgcctctgccagggcagctgcca 122540
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>tpg|BK000877.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M271, complete sequence
          Length = 9866

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 555  ttcttggctgcctctgccagggca 578
            ||||||||||| ||||||||||||
Sbjct: 6801 ttcttggctgcttctgccagggca 6778
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>emb|CR388161.7| Zebrafish DNA sequence from clone CH211-288B17 in linkage group 18,
            complete sequence
          Length = 80508

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   aacaaagacattaacagttc 107
            ||||||||||||||||||||
Sbjct: 7268 aacaaagacattaacagttc 7249
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 555     ttcttggctgcctctgccagggca 578
               ||||||||||| ||||||||||||
Sbjct: 6200578 ttcttggctgcttctgccagggca 6200601
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 555     ttcttggctgcctctgccagggca 578
               ||||||||||| ||||||||||||
Sbjct: 9446390 ttcttggctgcttctgccagggca 9446367
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 164      ccgacacggtacaccaatgccaca 187
                |||| |||||||||||||||||||
Sbjct: 25000743 ccgaaacggtacaccaatgccaca 25000766



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 555      ttcttggctgcctctgccagggca 578
                ||||||||||| ||||||||||||
Sbjct: 20254997 ttcttggctgcttctgccagggca 20255020
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>gb|AC007971.3| Homo sapiens BAC clone RP11-510C23 from 2, complete sequence
          Length = 146705

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ataatataattatttaggta 21
             ||||||||||||||||||||
Sbjct: 87164 ataatataattatttaggta 87183
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 555     ttcttggctgcctctgccagggca 578
               ||||||||||| ||||||||||||
Sbjct: 9518087 ttcttggctgcttctgccagggca 9518064
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>emb|AL606997.3|OSJN00115 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0059D20,
             complete sequence
          Length = 147108

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 555   ttcttggctgcctctgccagggca 578
             ||||||||||| ||||||||||||
Sbjct: 96363 ttcttggctgcttctgccagggca 96386
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>gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, complete sequence
          Length = 193004

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     ccaacaaagacattaacagt 105
              ||||||||||||||||||||
Sbjct: 149728 ccaacaaagacattaacagt 149709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,200,124
Number of Sequences: 3902068
Number of extensions: 6200124
Number of successful extensions: 112744
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112461
Number of HSP's gapped (non-prelim): 283
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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