ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CR1KA_BACTM (Q45715) Pesticidal crystal protein cry1Ka (Insectic... 30 4.6
2CTNA_DROME (P35220) Alpha-catenin 30 6.0
3PAQR3_HUMAN (Q6TCH7) Progestin and adipoQ receptor family member... 30 7.9

>CR1KA_BACTM (Q45715) Pesticidal crystal protein cry1Ka (Insecticidal|
            delta-endotoxin CryIK(a)) (Crystaline entomocidal
            protoxin) (137 kDa crystal protein)
          Length = 1215

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -1

Query: 481  LTGKCLAKIKAGNFDKQQKTWKFQ----NTITEALEDITALHYDEVRDEIYTGNRHGLVH 314
            L GK L+++K      + K  K Q       TEA E + AL  D   D++      G++H
Sbjct: 900  LLGKALSRVKRAEKKWRDKYEKLQLETKRVYTEAKESVDALFVDSQYDKLQANTNIGIIH 959



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>CTNA_DROME (P35220) Alpha-catenin|
          Length = 917

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 499 INISNILTGKCLAKIKAGNFDKQQKTWKFQ-NTITEALEDITAL 371
           IN ++ILT +  +K+   N    ++ W+ Q   +TEA++DIT +
Sbjct: 468 INAASILTVRPNSKVAQENMTTYRQAWEVQVRILTEAVDDITTI 511



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>PAQR3_HUMAN (Q6TCH7) Progestin and adipoQ receptor family member 3 (Progestin|
           and adipoQ receptor family member III)
          Length = 311

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 260 CSFAGGPI*QPSLRWCWPRRGLGSPAVSNLLMWIVVLF 147
           CS +G  +  P+L W W   G+G+P V +    ++V++
Sbjct: 208 CSVSGYGV-IPTLHWVWLNGGIGAPIVQDFAPRVIVMY 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,256,136
Number of Sequences: 219361
Number of extensions: 1889134
Number of successful extensions: 4769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4767
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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