| Clone Name | rbags18d19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_194798.1| Oryza sativa (japonica cultivar-group) putative alpha-mannosidase (OSJNBa0029P06.16), mRNA Length = 1317 Score = 167 bits (84), Expect = 5e-38 Identities = 189/224 (84%) Strand = Plus / Minus Query: 251 ctccacttgagcttcctcatcgctgacttcttttggttggcggacaggttagtttcagtc 310 ||||| ||||||||| ||||| |||||||||||||||| || || ||| |||| |||||| Sbjct: 1199 ctccaattgagcttcttcatctctgacttcttttggtttgcagataggctagtctcagtc 1140 Query: 311 aattccttgatagttctctttccaaacaattttttcagttcaacttttgccatcactgaa 370 || || ||||| | ||||||||||||| ||| ||| |||||| |||||||| |||||| Sbjct: 1139 aaatctttgattatcctctttccaaacagctttctcaattcaacctttgccattactgaa 1080 Query: 371 tattgtgggtcttctgcagcctgaaacaaatgtcccaagcggagaagtgtggtcccatca 430 ||||||| ||| ||| ||||||||| | ||| |||| || || |||||||| |||||| Sbjct: 1079 tattgtgtgtcctcttgagcctgaaaaagatgcgccaatcgaaggagtgtggtgccatca 1020 Query: 431 tcgagattctgcaaggtgatgatcgcgacattatcaggaagact 474 || ||| |||||||||||||||| || ||||||||||||||||| Sbjct: 1019 tcaagactctgcaaggtgatgattgcaacattatcaggaagact 976
>dbj|AK069822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027F12, full insert sequence Length = 3416 Score = 167 bits (84), Expect = 5e-38 Identities = 189/224 (84%) Strand = Plus / Minus Query: 251 ctccacttgagcttcctcatcgctgacttcttttggttggcggacaggttagtttcagtc 310 ||||| ||||||||| ||||| |||||||||||||||| || || ||| |||| |||||| Sbjct: 3129 ctccaattgagcttcttcatctctgacttcttttggtttgcagataggctagtctcagtc 3070 Query: 311 aattccttgatagttctctttccaaacaattttttcagttcaacttttgccatcactgaa 370 || || ||||| | ||||||||||||| ||| ||| |||||| |||||||| |||||| Sbjct: 3069 aaatctttgattatcctctttccaaacagctttctcaattcaacctttgccattactgaa 3010 Query: 371 tattgtgggtcttctgcagcctgaaacaaatgtcccaagcggagaagtgtggtcccatca 430 ||||||| ||| ||| ||||||||| | ||| |||| || || |||||||| |||||| Sbjct: 3009 tattgtgtgtcctcttgagcctgaaaaagatgcgccaatcgaaggagtgtggtgccatca 2950 Query: 431 tcgagattctgcaaggtgatgatcgcgacattatcaggaagact 474 || ||| |||||||||||||||| || ||||||||||||||||| Sbjct: 2949 tcaagactctgcaaggtgatgattgcaacattatcaggaagact 2906
>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence Length = 122319 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 251 ctccacttgagcttcctcatcgctgacttcttttggttggcggacaggttagtttcagtc 310 ||||| ||||||||| ||||| |||||||||||||||| || || ||| |||| |||||| Sbjct: 33662 ctccaattgagcttcttcatctctgacttcttttggtttgcagataggctagtctcagtc 33603 Query: 311 aattccttgat 321 || || ||||| Sbjct: 33602 aaatctttgat 33592 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 326 ctctttccaaacaattttttcagttcaacttttgccatcactgaatattgtg 377 ||||||||||||| ||| ||| |||||| |||||||| ||||||||||||| Sbjct: 33453 ctctttccaaacagctttctcaattcaacctttgccattactgaatattgtg 33402 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 439 ctgcaaggtgatgatcgcgacattatcaggaagact 474 ||||||||||||||| || ||||||||||||||||| Sbjct: 33179 ctgcaaggtgatgattgcaacattatcaggaagact 33144
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence Length = 151533 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 251 ctccacttgagcttcctcatcgctgacttcttttggttggcggacaggttagtttcagtc 310 ||||| ||||||||| ||||| |||||||||||||||| || || ||| |||| |||||| Sbjct: 125195 ctccaattgagcttcttcatctctgacttcttttggtttgcagataggctagtctcagtc 125136 Query: 311 aattccttgat 321 || || ||||| Sbjct: 125135 aaatctttgat 125125 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 326 ctctttccaaacaattttttcagttcaacttttgccatcactgaatattgtg 377 ||||||||||||| ||| ||| |||||| |||||||| ||||||||||||| Sbjct: 124986 ctctttccaaacagctttctcaattcaacctttgccattactgaatattgtg 124935 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 439 ctgcaaggtgatgatcgcgacattatcaggaagact 474 ||||||||||||||| || ||||||||||||||||| Sbjct: 124712 ctgcaaggtgatgattgcaacattatcaggaagact 124677
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 251 ctccacttgagcttcctcatcgctgacttcttttggttggcggacaggttagtttcagtc 310 ||||| ||||||||| ||||| |||||||||||||||| || || ||| |||| |||||| Sbjct: 2468463 ctccaattgagcttcttcatctctgacttcttttggtttgcagataggctagtctcagtc 2468404 Query: 311 aattccttgat 321 || || ||||| Sbjct: 2468403 aaatctttgat 2468393 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 326 ctctttccaaacaattttttcagttcaacttttgccatcactgaatattgtg 377 ||||||||||||| ||| ||| |||||| |||||||| ||||||||||||| Sbjct: 2468254 ctctttccaaacagctttctcaattcaacctttgccattactgaatattgtg 2468203 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 439 ctgcaaggtgatgatcgcgacattatcaggaagact 474 ||||||||||||||| || ||||||||||||||||| Sbjct: 2467980 ctgcaaggtgatgattgcaacattatcaggaagact 2467945
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 251 ctccacttgagcttcctcatcgctgacttcttttggttggcggacaggttagtttcagtc 310 ||||| ||||||||| ||||| |||||||||||||||| || || ||| |||| |||||| Sbjct: 2468414 ctccaattgagcttcttcatctctgacttcttttggtttgcagataggctagtctcagtc 2468355 Query: 311 aattccttgat 321 || || ||||| Sbjct: 2468354 aaatctttgat 2468344 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 326 ctctttccaaacaattttttcagttcaacttttgccatcactgaatattgtg 377 ||||||||||||| ||| ||| |||||| |||||||| ||||||||||||| Sbjct: 2468205 ctctttccaaacagctttctcaattcaacctttgccattactgaatattgtg 2468154 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 439 ctgcaaggtgatgatcgcgacattatcaggaagact 474 ||||||||||||||| || ||||||||||||||||| Sbjct: 2467931 ctgcaaggtgatgattgcaacattatcaggaagact 2467896
>gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, region 43D-43D, BAC clone BACR04H12, complete sequence Length = 175285 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 caattttttcagttcaactttt 358 |||||||||||||||||||||| Sbjct: 34384 caattttttcagttcaactttt 34363
>gb|AC008258.4|AC008258 Drosophila melanogaster, chromosome 2R, region 43C-43C, BAC clone BACR04G20, complete sequence Length = 184079 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 caattttttcagttcaactttt 358 |||||||||||||||||||||| Sbjct: 134891 caattttttcagttcaactttt 134870
>gb|AE003840.3| Drosophila melanogaster chromosome 2R, section 10 of 73 of the complete sequence Length = 272100 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 caattttttcagttcaactttt 358 |||||||||||||||||||||| Sbjct: 24788 caattttttcagttcaactttt 24767
>gb|AC005641.1|AC005641 Drosophila melanogaster, chromosome 2R, region 43D1-43D7, P1 clone DS03454, complete sequence Length = 50089 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 caattttttcagttcaactttt 358 |||||||||||||||||||||| Sbjct: 21984 caattttttcagttcaactttt 21963
>emb|CR713940.2|CNS0GDTS Tetraodon nigroviridis full-length cDNA Length = 778 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 gtaactggggcgtgactactttcag 236 |||||||||| |||||||||||||| Sbjct: 1 gtaactggggagtgactactttcag 25
>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence Length = 113210 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 333 caaacaattttttcagttcaacttt 357 ||||||| ||||||||||||||||| Sbjct: 65025 caaacaactttttcagttcaacttt 65001
>emb|AL390863.9| Human DNA sequence from clone RP11-239J11 on chromosome 1 Contains the 5' end of the HRPT2 gene for hyperparathyroidism 2 (with jaw tumor), the B3GAL2 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase polypeptide 2 and a CpG island, complete sequence Length = 122864 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aacatgcatggaattacataa 111 ||||||||||||||||||||| Sbjct: 19611 aacatgcatggaattacataa 19591
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 tcttctgcagcctgaaacaaa 400 ||||||||||||||||||||| Sbjct: 37017826 tcttctgcagcctgaaacaaa 37017846
>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1402_H07 Length = 140620 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 tcttctgcagcctgaaacaaa 400 ||||||||||||||||||||| Sbjct: 108130 tcttctgcagcctgaaacaaa 108150
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 tcttctgcagcctgaaacaaa 400 ||||||||||||||||||||| Sbjct: 18967 tcttctgcagcctgaaacaaa 18987
>gb|AC024770.1| Caenorhabditis elegans cosmid Y39H10A, complete sequence Length = 36751 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 attttttcagttcaactttt 358 |||||||||||||||||||| Sbjct: 16740 attttttcagttcaactttt 16721
>gb|BC074491.1| Xenopus laevis hypothetical protein LOC443717, mRNA (cDNA clone IMAGE:6953116), partial cds Length = 2561 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 ttccaaacaattttttcagttcaa 353 ||||||||| |||||||||||||| Sbjct: 1067 ttccaaacacttttttcagttcaa 1090
>gb|AC145724.1| Pan troglodytes BAC clone RP43-22E12 from 7, complete sequence Length = 152426 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gttctctttccaaacaattt 342 |||||||||||||||||||| Sbjct: 82152 gttctctttccaaacaattt 82171
>gb|AC119411.16| Medicago truncatula clone mth2-23c14, complete sequence Length = 106790 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttttttcagttcaacttttg 359 |||||||||||||||||||| Sbjct: 79395 ttttttcagttcaacttttg 79376
>emb|AL732374.14| Human DNA sequence from clone RP13-444K19 on chromosome X Contains a mitochondrial ribosomal protein S18C (MRPS18C) pseudogene, the 3' end of the gene for a novel protein similar to PHD finger protein 2 PHF2 and a CpG island, complete sequence Length = 224187 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgactgagacacatttattt 22 |||||||||||||||||||| Sbjct: 58660 tgactgagacacatttattt 58679
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 141 tcaccaagaatgttcttatctccatggg 168 ||||||| ||||||| |||||||||||| Sbjct: 2719031 tcaccaacaatgttcgtatctccatggg 2719058
>emb|AL139814.13| Human DNA sequence from clone RP11-211E5 on chromosome 10p12.1-12.33 Contains part of the CACNB2 gene for calcium channel voltage-dependent beta 2 subunit, complete sequence Length = 119884 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 aagaagaaagggtgaataaa 569 |||||||||||||||||||| Sbjct: 89403 aagaagaaagggtgaataaa 89422
>emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5 Length = 254050 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 ataaactttttgtccttgtg 584 |||||||||||||||||||| Sbjct: 140521 ataaactttttgtccttgtg 140540
>emb|CR376769.6| Zebrafish DNA sequence from clone CH211-120K3 in linkage group 24, complete sequence Length = 56040 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ttttttcagttcaacttttg 359 |||||||||||||||||||| Sbjct: 49339 ttttttcagttcaacttttg 49358
>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187437 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tttcagttcaacttttgcca 362 |||||||||||||||||||| Sbjct: 27803 tttcagttcaacttttgcca 27822
>dbj|AK095707.1| Homo sapiens cDNA FLJ38388 fis, clone FEBRA2004485 Length = 2984 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ttccttgatagttctctttc 332 |||||||||||||||||||| Sbjct: 1875 ttccttgatagttctctttc 1856
>gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156526 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tttcagttcaacttttgcca 362 |||||||||||||||||||| Sbjct: 153959 tttcagttcaacttttgcca 153978
>gb|AC091736.2| Homo sapiens chromosome 7 clone RP11-644N4, complete sequence Length = 156539 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gttctctttccaaacaattt 342 |||||||||||||||||||| Sbjct: 99423 gttctctttccaaacaattt 99404
>gb|AC074194.6| Homo sapiens BAC clone RP11-739P1 from 4, complete sequence Length = 177273 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 ctcacaggaaatgaaaggcacaat 80 ||||||||||| |||||||||||| Sbjct: 65912 ctcacaggaaaggaaaggcacaat 65889
>gb|DQ366280.1| Boletellus shichianus isolate AFTOL-ID 532 RNA polymerase II second largest subunit (RPB2) gene, partial cds Length = 1066 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ggctaccggtaactggggcg 223 |||||||||||||||||||| Sbjct: 197 ggctaccggtaactggggcg 216
>gb|DQ366279.1| Aureoboletus thibetanus isolate AFTOL-ID 450 RNA polymerase II second largest subunit (RPB2) gene, partial cds Length = 2174 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ggctaccggtaactggggcg 223 |||||||||||||||||||| Sbjct: 215 ggctaccggtaactggggcg 234
>gb|AY513737.1| Oreochromis mossambicus Na-K-Cl cotransporter (NKCC1alpha) mRNA, complete cds Length = 3954 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cacagtttcaccaagaatgt 153 |||||||||||||||||||| Sbjct: 2390 cacagtttcaccaagaatgt 2409
>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence Length = 191731 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 ttccttgatagttctctttc 332 |||||||||||||||||||| Sbjct: 153295 ttccttgatagttctctttc 153314
>gb|AC009148.11| Homo sapiens chromosome 16 clone RP11-55K13, complete sequence Length = 157518 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 ttccttgatagttctctttc 332 |||||||||||||||||||| Sbjct: 52414 ttccttgatagttctctttc 52433
>emb|AL954697.15| Zebrafish DNA sequence from clone CH211-286K11 in linkage group 25, complete sequence Length = 134798 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ttccaaacaattttttcagt 349 |||||||||||||||||||| Sbjct: 132122 ttccaaacaattttttcagt 132141
>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete sequence Length = 302417 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tttcagttcaacttttgcca 362 |||||||||||||||||||| Sbjct: 100813 tttcagttcaacttttgcca 100832
>gb|AC173470.3| Dasypus novemcinctus clone VMRC5-164N1, complete sequence Length = 75140 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ggaaatgaaaggcacaataa 82 |||||||||||||||||||| Sbjct: 34344 ggaaatgaaaggcacaataa 34325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,629,174 Number of Sequences: 3902068 Number of extensions: 6629174 Number of successful extensions: 128678 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128447 Number of HSP's gapped (non-prelim): 231 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)