ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18d15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHOSP_NDVB (P24698) Phosphoprotein (Protein P) 30 5.7
2TFB3_SCHPO (O94684) RNA polymerase II transcription factor B sub... 30 9.7
3BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Ge... 30 9.7

>PHOSP_NDVB (P24698) Phosphoprotein (Protein P)|
          Length = 395

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 164 TNPTKMLLLLLPKFSEKSMKAQAGQWSPP 250
           T  +  LLL+L K S KS  A+ G WS P
Sbjct: 111 TGASNSLLLMLDKLSNKSSNAKKGLWSSP 139



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>TFB3_SCHPO (O94684) RNA polymerase II transcription factor B subunit 3 (RNA|
           polymerase II transcription factor B p38 subunit) (RNA
           polymerase II transcription factor B 38 kDa subunit)
           (CDK-activating kinase assembly factor MAT1 homolog)
           (RING finger prot
          Length = 318

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 138 RLLLPDYQQPIQPKCYSYFCQNSRKRA*KHRQGSGPLPTDNQTMNDD--RRLTWRSRITE 311
           R L P+ +  I P+CY   C++   R         P P  N+ +     R  T+     E
Sbjct: 20  RYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKILRKAKFREQTFEDAQIE 79

Query: 312 RHPSVRRRLS 341
           R   VR+R+S
Sbjct: 80  REVDVRKRIS 89



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>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 825

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 521 GNVSSKSWSSLLNRNADLLEEESVAELVHKLDGLSRPGSPCN 396
           G ++   W +   R  +L+++ S+AE V+   G+     PC+
Sbjct: 46  GRINDGKWQAAFYRARELVDQMSIAEKVNLTTGVGSASGPCS 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,134,459
Number of Sequences: 219361
Number of extensions: 2264717
Number of successful extensions: 7048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7045
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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