ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MNTH_MYCLE (Q50103) Probable manganese transport protein mntH 30 2.6
2FUR2_MYCFO (O69451) Ferric uptake regulation protein 2 (Ferric u... 29 7.5
3MNTH_MYCBO (O69443) Probable manganese transport protein mntH (B... 28 9.7
4SLBP_HUMAN (Q14493) Histone RNA hairpin-binding protein (Histone... 28 9.7
5MNTH_MYCTU (O05916) Probable manganese transport protein mntH 28 9.7

>MNTH_MYCLE (Q50103) Probable manganese transport protein mntH|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 156 TNSRGETLLGWASVLQISMLNVVL 85
           TN    T+LGWA  + +S+LNVVL
Sbjct: 396 TNHPATTVLGWAVAILVSLLNVVL 419



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>FUR2_MYCFO (O69451) Ferric uptake regulation protein 2 (Ferric uptake|
           regulator 2)
          Length = 146

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 289 TRSADSRYHCLKRSSGPRASLNCSDTSSLTCLALVE 396
           +R  D+ +H + RS G  A ++CS   S  CL   E
Sbjct: 85  SRIGDNHHHVVCRSCGAIADVDCSXAGSAPCLTASE 120



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>MNTH_MYCBO (O69443) Probable manganese transport protein mntH (BRAMP)|
          Length = 684

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 156 TNSRGETLLGWASVLQISMLNVVL 85
           TN R  T +GW   + +S+LNV+L
Sbjct: 654 TNHRATTWVGWVVAVMVSLLNVML 677



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>SLBP_HUMAN (Q14493) Histone RNA hairpin-binding protein (Histone|
           stem-loop-binding protein)
          Length = 270

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 247 DACGWHPKPEQEQTTRSADSRYHCLKRSSGPRASLNCSDTSS 372
           D   W P+  +E   R A+ R        GP+    CSD +S
Sbjct: 36  DGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWAS 77



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>MNTH_MYCTU (O05916) Probable manganese transport protein mntH|
          Length = 428

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 156 TNSRGETLLGWASVLQISMLNVVL 85
           TN R  T +GW   + +S+LNV+L
Sbjct: 398 TNHRATTWVGWVVAVMVSLLNVML 421


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,008,859
Number of Sequences: 219361
Number of extensions: 1190108
Number of successful extensions: 2805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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