Clone Information

BLAST Search Result

Clone Name	rbags17o14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_473116.1\| Oryza sativa (japonica cultivar-group), predic...	149	1e-32
2	dbj\|AK121759.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	149	1e-32
3	gb\|AY107421.1\| Zea mays PCO139254 mRNA sequence	117	3e-23
4	emb\|AL662969.3\|OSJN00169 Oryza sativa genomic DNA, chromosome 4,...	62	2e-06
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	62	2e-06
6	emb\|AL731626.4\|OSJN00271 Oryza sativa genomic DNA, chromosome 4,...	48	0.027
7	gb\|AC099695.15\| Mus musculus chromosome 10, clone RP23-234P12, c...	44	0.42
8	dbj\|AK136946.1\| Mus musculus 12 days embryo embryonic body betwe...	44	0.42
9	gb\|AC149267.1\| Solanum demissum chromosome 5 clone PGEC747E24 ma...	42	1.7
10	gb\|AC144791.1\| Solanum demissum chromosome 5 BAC PGEC668E02 geno...	42	1.7
11	gb\|AC139568.5\| Mus musculus chromosome 12, clone RP23-208G5, com...	42	1.7
12	gb\|AC112257.5\| Mus musculus BAC clone RP23-43A18 from 16, comple...	42	1.7
13	gb\|AC152061.6\| Mus musculus BAC clone RP23-351K4 from chromosome...	42	1.7
14	gb\|AC091832.3\| Homo sapiens chromosome 5 clone CTD-2029E14, comp...	42	1.7
15	gb\|AC161815.4\| Mus musculus BAC clone RP23-353C21 from chromosom...	42	1.7
16	gb\|AC139332.5\| Mus musculus BAC clone RP24-113C21 from chromosom...	42	1.7
17	emb\|BX323833.4\| Pig DNA sequence from clone XX-554F3, complete s...	42	1.7
18	dbj\|AP006080.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	42	1.7
19	ref\|XM_633422.1\| Dictyostelium discoideum hypothetical protein (...	40	6.5
20	gb\|AE017197.1\| Rickettsia typhi str. Wilmington complete genome	40	6.5
21	gb\|AC182658.2\| Populus trichocarpa clone Pop1-124E10, complete s...	40	6.5
22	gb\|AC162893.6\| Mus musculus chromosome 7, clone RP23-419K14, com...	40	6.5
23	gb\|AC147336.2\| Pan troglodytes BAC clone CH251-70I12 from Y, com...	40	6.5
24	gb\|AC023591.8\| Homo sapiens chromosome 15, clone RP11-768L13, co...	40	6.5
25	gb\|AC146239.3\| Pan troglodytes BAC clone CH251-176K11 from Y, co...	40	6.5
26	ref\|XM_803806.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	6.5
27	ref\|XM_803814.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	6.5
28	gb\|AC004740.1\| Homo sapiens PAC clone RP4-631B17 from 7, complet...	40	6.5
29	emb\|AL359380.16\| Human DNA sequence from clone RP11-642N5 on chr...	40	6.5
30	emb\|AL356241.8\| Human DNA sequence from clone RP11-58K5 on chrom...	40	6.5
31	emb\|AL354806.22\| Human DNA sequence from clone RP11-521J24 on ch...	40	6.5
32	emb\|AL354823.7\| Human DNA sequence from clone RP11-452L13 on chr...	40	6.5
33	emb\|AL157394.15\| Human DNA sequence from clone RP11-399O19 on ch...	40	6.5
34	emb\|AL109618.1\|HSJ775C13 Human DNA sequence from clone RP4-775C1...	40	6.5
35	gb\|AC112509.4\| Homo sapiens 3 BAC RP11-428B17 (Roswell Park Canc...	40	6.5
36	emb\|Z98745.1\|HS29K1 Human DNA sequence from clone RP1-29K1 on ch...	40	6.5
37	emb\|BX571866.1\| Photorhabdus luminescens subsp. laumondii TTO1 c...	40	6.5
38	emb\|AJ235271.1\|RPXX02 Rickettsia prowazekii strain Madrid E, com...	40	6.5
39	gb\|AC104335.2\| Homo sapiens chromosome 1 clone RP11-433K2, compl...	40	6.5
40	gb\|AC100835.2\| Homo sapiens chromosome 15, clone CTD-3154N5, com...	40	6.5
41	dbj\|BS000554.1\| Pan troglodytes chromosome Y clone:PTB-334B21, c...	40	6.5
42	dbj\|BS000549.1\| Pan troglodytes chromosome Y clone:PTB-240N05, c...	40	6.5
43	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	6.5
44	gb\|AC107071.3\| Homo sapiens BAC clone RP11-348N12 from 4, comple...	40	6.5
45	gb\|AC105750.2\| Homo sapiens chromosome 3 clone RP11-776K4, compl...	40	6.5
46	gb\|AC087525.6\| Homo sapiens chromosome 15, clone RP11-321G12, co...	40	6.5
47	gb\|AC003974.3\| Arabidopsis thaliana chromosome 2 clone F24L7 map...	40	6.5
48	gb\|DP000031.1\| Dasypus novemcinctus target 116 genomic scaffold	40	6.5
49	gb\|AC145163.5\| Mus musculus BAC clone RP24-238C5 from chromosome...	40	6.5
50	gb\|AC132189.13\| Mus musculus chromosome 12, clone RP24-95M20, co...	40	6.5
51	gb\|AC011246.6\| Homo sapiens BAC clone RP11-498O20 from 2, comple...	40	6.5
52	gb\|AC005678.1\|AC005678 Homo sapiens PAC clone RP11-569I24 from 7...	40	6.5
53	gb\|AC007244.2\|AC007244 Homo sapiens BAC clone RP11-207L19 from Y...	40	6.5
54	gb\|AC120860.7\| Mus musculus chromosome 1, clone RP23-26I10, comp...	40	6.5
55	gb\|AC157605.1\| Dasypus novemcinctus, clone Dasypus novemcinctus-...	40	6.5
56	gb\|AC169088.2\| Gallus gallus BAC clone CH261-100B3 from chromoso...	40	6.5
57	emb\|AL844149.4\| Mouse DNA sequence from clone RP23-194D5 on chro...	40	6.5
58	emb\|AL928564.8\| Mouse DNA sequence from clone RP23-255J22 on chr...	40	6.5
59	dbj\|AP002078.3\| Homo sapiens genomic DNA, chromosome 4q22-q24, c...	40	6.5

>ref|XM_473116.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 216

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                       
Query: 353 attgctccgacacctcctccctcacttgtttagctttggttgagagattctccaaagtct 412
           |||||||||| | |||||||||||||| |||||||||||  || |||||||| | || ||
Sbjct: 175 attgctccgatagctcctccctcacttctttagctttggacgatagattctcaagagact 116

                                                                       
Query: 413 tgttggtcctcacagcaaacctctggaaggcacggttgttggcgaggccctccacgagga 472
           ||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| ||
Sbjct: 115 tgttggtcctcacagcaaatctctggaaggtacggttgttggcgagcccctcgacgatga 56

                      
Query: 473 actcgttgacg 483
           |||||||||||
Sbjct: 55  actcgttgacg 45

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>dbj|AK121759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089A17, full
           insert sequence
          Length = 577

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                       
Query: 353 attgctccgacacctcctccctcacttgtttagctttggttgagagattctccaaagtct 412
           |||||||||| | |||||||||||||| |||||||||||  || |||||||| | || ||
Sbjct: 258 attgctccgatagctcctccctcacttctttagctttggacgatagattctcaagagact 199

                                                                       
Query: 413 tgttggtcctcacagcaaacctctggaaggcacggttgttggcgaggccctccacgagga 472
           ||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| ||
Sbjct: 198 tgttggtcctcacagcaaatctctggaaggtacggttgttggcgagcccctcgacgatga 139

                      
Query: 473 actcgttgacg 483
           |||||||||||
Sbjct: 138 actcgttgacg 128

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>gb|AY107421.1| Zea mays PCO139254 mRNA sequence
          Length = 626

 Score =  117 bits (59), Expect = 3e-23
 Identities = 143/171 (83%)
 Strand = Plus / Minus

                                                                       
Query: 312 tcactgcttgaagcgatcatcgggtccgcgagcatccttaaattgctccgacacctcctc 371
           ||||||||||||| |||| |   | || ||||| ||||| ||||| ||||| | ||||||
Sbjct: 330 tcactgcttgaagtgatctttctggccacgagcttccttcaattgttccgataactcctc 271

                                                                       
Query: 372 cctcacttgtttagctttggttgagagattctccaaagtcttgttggtcctcacagcaaa 431
           ||||||||  |||||||| |  || ||  |||| | |||| |||||||| ||||||| ||
Sbjct: 270 cctcacttccttagctttagacgataggctctcaagagtcctgttggtcttcacagcgaa 211

                                                              
Query: 432 cctctggaaggcacggttgttggcgaggccctccacgaggaactcgttgac 482
           ||||||||| ||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 210 cctctggaatgcacggttgttggcgaggccctcgacgaggagctcgttgac 160

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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 397   agattctccaaagtcttgttggtcctcacagcaaacctctggaaggcacgg 447
             |||||||| | || ||||||||||||||||||||| |||||||||| ||||
Sbjct: 88170 agattctcaagagacttgttggtcctcacagcaaatctctggaaggtacgg 88120



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 448   ttgttggcgaggccctccacgaggaactcgttgacg 483
             ||||||||||| ||||| |||| |||||||||||||
Sbjct: 85585 ttgttggcgagcccctcgacgatgaactcgttgacg 85550



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 353   attgctccgacacctcctccctcacttgtttagct 387
             |||||||||| | |||||||||||||| |||||||
Sbjct: 88349 attgctccgatagctcctccctcacttctttagct 88315

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 397      agattctccaaagtcttgttggtcctcacagcaaacctctggaaggcacgg 447
                |||||||| | || ||||||||||||||||||||| |||||||||| ||||
Sbjct: 25361611 agattctcaagagacttgttggtcctcacagcaaatctctggaaggtacgg 25361561



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 448      ttgttggcgaggccctccacgaggaactcgttgacg 483
                ||||||||||| ||||| |||| |||||||||||||
Sbjct: 25359026 ttgttggcgagcccctcgacgatgaactcgttgacg 25358991



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 353      attgctccgacacctcctccctcacttgtttagct 387
                |||||||||| | |||||||||||||| |||||||
Sbjct: 25361790 attgctccgatagctcctccctcacttctttagct 25361756

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>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
              complete sequence
          Length = 143582

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 448    ttgttggcgaggccctccacgaggaactcgttgacg 483
              ||||||||||| ||||| |||| |||||||||||||
Sbjct: 142965 ttgttggcgagcccctcgacgatgaactcgttgacg 142930

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>gb|AC099695.15| Mus musculus chromosome 10, clone RP23-234P12, complete sequence
          Length = 169161

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 267   aaaaccagaacaagaacagaca 288
             ||||||||||||||||||||||
Sbjct: 39242 aaaaccagaacaagaacagaca 39263

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>dbj|AK136946.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430001A19 product:unclassifiable, full insert
           sequence
          Length = 3299

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 267 aaaaccagaacaagaacagaca 288
           ||||||||||||||||||||||
Sbjct: 883 aaaaccagaacaagaacagaca 862

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>gb|AC149267.1| Solanum demissum chromosome 5 clone PGEC747E24 map MAP_LOC, complete
             sequence
          Length = 92340

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 205   aaatagaaaataagataatttagat 229
             ||||| |||||||||||||||||||
Sbjct: 20057 aaatataaaataagataatttagat 20081

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>gb|AC144791.1| Solanum demissum chromosome 5 BAC PGEC668E02 genomic sequence, complete
             sequence
          Length = 142575

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 205   aaatagaaaataagataatttagat 229
             ||||| |||||||||||||||||||
Sbjct: 81063 aaatataaaataagataatttagat 81039

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>gb|AC139568.5| Mus musculus chromosome 12, clone RP23-208G5, complete sequence
          Length = 202882

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   ataatttagatccggatttta 239
             |||||||||||||||||||||
Sbjct: 43292 ataatttagatccggatttta 43272

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>gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, complete sequence
          Length = 199117

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 81     ctcataaaacaacattaagcatagaaatt 109
              |||||||||||||||||| ||| ||||||
Sbjct: 167397 ctcataaaacaacattaatcatggaaatt 167369

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>gb|AC152061.6| Mus musculus BAC clone RP23-351K4 from chromosome 12, complete sequence
          Length = 206383

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   ataatttagatccggatttta 239
             |||||||||||||||||||||
Sbjct: 85933 ataatttagatccggatttta 85953

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>gb|AC091832.3| Homo sapiens chromosome 5 clone CTD-2029E14, complete sequence
          Length = 187969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    aaatttgtaaaaccgaggccc 125
              |||||||||||||||||||||
Sbjct: 146090 aaatttgtaaaaccgaggccc 146110

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>gb|AC161815.4| Mus musculus BAC clone RP23-353C21 from chromosome 16, complete
             sequence
          Length = 197690

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 81    ctcataaaacaacattaagcatagaaatt 109
             |||||||||||||||||| ||| ||||||
Sbjct: 13400 ctcataaaacaacattaatcatggaaatt 13372

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>gb|AC139332.5| Mus musculus BAC clone RP24-113C21 from chromosome 5, complete sequence
          Length = 143802

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   taaatagaaaataagataatt 224
             |||||||||||||||||||||
Sbjct: 86419 taaatagaaaataagataatt 86399

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>emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete sequence
          Length = 121483

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    ccagccaaggagagtctctcc 144
              |||||||||||||||||||||
Sbjct: 113288 ccagccaaggagagtctctcc 113308

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>dbj|AP006080.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT48M22, TM0118c,
             complete sequence
          Length = 91116

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 205   aaatagaaaataagataattt 225
             |||||||||||||||||||||
Sbjct: 39198 aaatagaaaataagataattt 39178

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>ref|XM_633422.1| Dictyostelium discoideum hypothetical protein (DDB0186023), partial
            mRNA
          Length = 7515

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 216  aagataatttagatccggattttatacaatgg 247
            |||||||||||||||| |||||| || |||||
Sbjct: 1217 aagataatttagatccagattttttagaatgg 1248

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>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 263    atccaaaaccagaacaagaacaga 286
              |||||||| |||||||||||||||
Sbjct: 518146 atccaaaagcagaacaagaacaga 518169

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>gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete sequence
          Length = 99811

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tctagttctcaatttctaaa 207
             ||||||||||||||||||||
Sbjct: 84559 tctagttctcaatttctaaa 84578

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>gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, complete sequence
          Length = 197052

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   caatttctaaatagaaaata 216
             ||||||||||||||||||||
Sbjct: 68585 caatttctaaatagaaaata 68566

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>gb|AC147336.2| Pan troglodytes BAC clone CH251-70I12 from Y, complete sequence
          Length = 194849

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   aatttctaaatagaaaataagata 221
             ||||| ||||||||||||||||||
Sbjct: 76708 aatttataaatagaaaataagata 76685

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>gb|AC023591.8| Homo sapiens chromosome 15, clone RP11-768L13, complete sequence
          Length = 171456

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    aatagaaaataagataattt 225
              ||||||||||||||||||||
Sbjct: 111608 aatagaaaataagataattt 111627

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>gb|AC146239.3| Pan troglodytes BAC clone CH251-176K11 from Y, complete sequence
          Length = 180132

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    aatttctaaatagaaaataagata 221
              ||||| ||||||||||||||||||
Sbjct: 168147 aatttataaatagaaaataagata 168124

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>ref|XM_803806.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508397.79) partial mRNA
          Length = 288

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 346 tccttaaattgctccgacacctcctccc 373
           |||||||||| ||||| |||||||||||
Sbjct: 89  tccttaaatttctccggcacctcctccc 62

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>ref|XM_803814.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509885.80) partial mRNA
          Length = 477

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 346 tccttaaattgctccgacacctcctccc 373
           |||||||||| ||||| |||||||||||
Sbjct: 278 tccttaaatttctccggcacctcctccc 251

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>gb|AC004740.1| Homo sapiens PAC clone RP4-631B17 from 7, complete sequence
          Length = 127270

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   taaatagaaaataagataat 223
             ||||||||||||||||||||
Sbjct: 24485 taaatagaaaataagataat 24466

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>emb|AL359380.16| Human DNA sequence from clone RP11-642N5 on chromosome 6 Contains the 3'
              end of a novel gene and the 5' end of the TINAG gene for
              tubulointerstitial nephritis antigen, complete sequence
          Length = 188826

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    ttagctttggttgagagatt 401
              ||||||||||||||||||||
Sbjct: 176798 ttagctttggttgagagatt 176779

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>emb|AL356241.8| Human DNA sequence from clone RP11-58K5 on chromosome 13, complete
              sequence
          Length = 171068

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 197    caatttctaaatagaaaataagat 220
              ||||||||||||||||||| ||||
Sbjct: 112336 caatttctaaatagaaaatcagat 112313

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>emb|AL354806.22| Human DNA sequence from clone RP11-521J24 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 198959

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     acatggcattactcataaaa 89
              ||||||||||||||||||||
Sbjct: 140880 acatggcattactcataaaa 140861

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>emb|AL354823.7| Human DNA sequence from clone RP11-452L13 on chromosome 13, complete
             sequence
          Length = 101091

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   agaaaataagataatttaga 228
             ||||||||||||||||||||
Sbjct: 83677 agaaaataagataatttaga 83696

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>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the
             5' end of a novel gene (MGC22805), a novel pseudogene
             (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family
             domain containing protein (KIAA1373 FLJ35627 FLJ33359), a
             novel gene (FLJ36021), the ACTA2 gene for actin alpha 2
             smooth muscle aorta, the TNFRSF6 gene for tumor necrosis
             factor receptor superfamily member 6 and two CpG islands,
             complete sequence
          Length = 187313

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   taaatagaaaataagataat 223
             ||||||||||||||||||||
Sbjct: 74598 taaatagaaaataagataat 74579

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>emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C13 on chromosome 20p12.1-13
             Contains an NS1-associated protein 1 (NSAP1) pseudogene,
             complete sequence
          Length = 103819

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   gtcctcacagcaaacctctg 437
             ||||||||||||||||||||
Sbjct: 60459 gtcctcacagcaaacctctg 60478

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>gb|AC112509.4| Homo sapiens 3 BAC RP11-428B17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110001

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   aatttctaaatagaaaataa 217
             ||||||||||||||||||||
Sbjct: 18722 aatttctaaatagaaaataa 18703

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>emb|Z98745.1|HS29K1 Human DNA sequence from clone RP1-29K1 on chromosome 6p21.3-22.2.
             Contains the gene for KIAA0426 (C2H2 type zinc finger
             protein), the gene for a novel C2H2 type zinc finger
             protein, a COX11 (COX11 (yeast) homolog, cytochrome c
             oxidase assembly protein) pseudogene, the olfactory
             receptor 2E1 pseudogene OR2E1P, the 3' end of a glutathion
             peroxidase pseudogene, ESTs, STSs, GSS and three CpG
             islands, complete sequence
          Length = 128779

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   taaatagaaaataagataat 223
             ||||||||||||||||||||
Sbjct: 12568 taaatagaaaataagataat 12549

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>emb|BX571866.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              8/17
          Length = 349652

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ggttacacagatttgccaag 36
              ||||||||||||||||||||
Sbjct: 115619 ggttacacagatttgccaag 115638

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>emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4
          Length = 312430

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 263    atccaaaaccagaacaagaacaga 286
              |||||||| |||||||||||||||
Sbjct: 234707 atccaaaagcagaacaagaacaga 234730

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>gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, complete sequence
          Length = 212426

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   acctcctccctcacttgttt 383
             ||||||||||||||||||||
Sbjct: 21841 acctcctccctcacttgttt 21860

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>gb|AC100835.2| Homo sapiens chromosome 15, clone CTD-3154N5, complete sequence
          Length = 165036

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   gacaaccaggagcgctgata 304
             ||||||||||||||||||||
Sbjct: 84321 gacaaccaggagcgctgata 84340

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>dbj|BS000554.1| Pan troglodytes chromosome Y clone:PTB-334B21, complete sequences
          Length = 129327

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 198  aatttctaaatagaaaataagata 221
            ||||| ||||||||||||||||||
Sbjct: 5895 aatttataaatagaaaataagata 5918

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>dbj|BS000549.1| Pan troglodytes chromosome Y clone:PTB-240N05, complete sequences
          Length = 148562

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 198    aatttctaaatagaaaataagata 221
              ||||| ||||||||||||||||||
Sbjct: 142315 aatttataaatagaaaataagata 142338

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 198      aatttctaaatagaaaataagata 221
                ||||| ||||||||||||||||||
Sbjct: 16473063 aatttataaatagaaaataagata 16473040

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>gb|AC107071.3| Homo sapiens BAC clone RP11-348N12 from 4, complete sequence
          Length = 110794

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcaatttctaaatagaaaat 215
             ||||||||||||||||||||
Sbjct: 46580 tcaatttctaaatagaaaat 46561

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>gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, complete sequence
          Length = 166478

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 366   ctcctccctcacttgtttagcttt 389
             |||||||||| |||||||||||||
Sbjct: 89052 ctcctccctcccttgtttagcttt 89075

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>gb|AC087525.6| Homo sapiens chromosome 15, clone RP11-321G12, complete sequence
          Length = 157590

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    aatagaaaataagataattt 225
              ||||||||||||||||||||
Sbjct: 117817 aatagaaaataagataattt 117798

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>gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L7 map TEn5, complete
             sequence
          Length = 92612

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   tcaatttctaaatagaaaataaga 219
             |||| |||||||||||||||||||
Sbjct: 73138 tcaaattctaaatagaaaataaga 73161

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>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold
          Length = 288075

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   aacaagaacagacaaccagg 294
             ||||||||||||||||||||
Sbjct: 23599 aacaagaacagacaaccagg 23618

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>gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome 12, complete sequence
          Length = 194429

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   acacctcctccctcacttgt 381
             ||||||||||||||||||||
Sbjct: 50043 acacctcctccctcacttgt 50024

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>gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, complete sequence
          Length = 203534

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    acacctcctccctcacttgt 381
              ||||||||||||||||||||
Sbjct: 117589 acacctcctccctcacttgt 117570

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>gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, complete sequence
          Length = 220183

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    aatttctaaatagaaaataa 217
              ||||||||||||||||||||
Sbjct: 160311 aatttctaaatagaaaataa 160292

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>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence
          Length = 187543

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   taaatagaaaataagataat 223
             ||||||||||||||||||||
Sbjct: 57597 taaatagaaaataagataat 57578

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>gb|AC007244.2|AC007244 Homo sapiens BAC clone RP11-207L19 from Y, complete sequence
          Length = 184977

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 198  aatttctaaatagaaaataagata 221
            ||||| ||||||||||||||||||
Sbjct: 8060 aatttataaatagaaaataagata 8083

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>gb|AC120860.7| Mus musculus chromosome 1, clone RP23-26I10, complete sequence
          Length = 188326

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   tccgacacctcctccctcac 377
             ||||||||||||||||||||
Sbjct: 51627 tccgacacctcctccctcac 51646

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>gb|AC157605.1| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875A15, complete
             sequence
          Length = 40473

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   caagaacagacaaccaggag 296
             ||||||||||||||||||||
Sbjct: 26722 caagaacagacaaccaggag 26741

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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete
             sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   caaaaccagaacaagaacag 285
             ||||||||||||||||||||
Sbjct: 87354 caaaaccagaacaagaacag 87335

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>emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chromosome 4, complete
             sequence
          Length = 199774

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   aatttctaaatagaaaataa 217
             ||||||||||||||||||||
Sbjct: 62310 aatttctaaatagaaaataa 62329

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>emb|AL928564.8| Mouse DNA sequence from clone RP23-255J22 on chromosome 2, complete
              sequence
          Length = 223337

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    aatagaaaataagataattt 225
              ||||||||||||||||||||
Sbjct: 150452 aatagaaaataagataattt 150471

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>dbj|AP002078.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2126N15, complete
             sequence
          Length = 107264

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tcaatttctaaatagaaaat 215
             ||||||||||||||||||||
Sbjct: 67207 tcaatttctaaatagaaaat 67226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,559,036
Number of Sequences: 3902068
Number of extensions: 4559036
Number of successful extensions: 88960
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88772
Number of HSP's gapped (non-prelim): 187
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result