ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags18d12 |
|---|---|
| Clone Library Name | barley_pub |
>FTCD_RAT (O88618) Formimidoyltransferase-cyclodeaminase| (Formiminotransferase-cyclodeaminase) (FTCD) (58 kDa microtubule-binding protein) [Includes: Glutamate formimidoyltransferase (EC 2.1.2.5) (Glutamate formiminotransferase) (Glutamate formyltransfera Length = 541 Score = 33.1 bits (74), Expect = 0.76 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 554 GRRLAKEYS-RVLMRRHRARQTAESTLLRLKKEAIAALPEKLRAAAMVPDMTP 399 G+RLA+E + V + A+ + TL ++ ALPEKL+ A VPD P Sbjct: 112 GQRLAEELNVPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGP 164
>FTCD_MOUSE (Q91XD4) Formimidoyltransferase-cyclodeaminase| (Formiminotransferase-cyclodeaminase) (FTCD) [Includes: Glutamate formimidoyltransferase (EC 2.1.2.5) (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrofolate cy Length = 541 Score = 33.1 bits (74), Expect = 0.76 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 554 GRRLAKEYSRVLMRRHRARQT-AESTLLRLKKEAIAALPEKLRAAAMVPDMTP 399 G+RLA+E + + A QT + TL ++ ALPEKL+ A VPD P Sbjct: 112 GQRLAEELNVPVYLYGEAAQTPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGP 164
>FDHD_STRAW (Q82M23) Protein fdhD homolog| Length = 282 Score = 32.0 bits (71), Expect = 1.7 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = -3 Query: 512 RHRARQTAESTL-LRLKKEAIAALPEKLRAAAMVPDMTPFPANRYMATLTPPIEGYIEKV 336 R AR T + T +RL+ E +A+LP++LRAA V D T + A L EG + + Sbjct: 127 RTTARWTIDDTPPVRLEPELLASLPDRLRAAQRVFDRT---GGLHAAALFTE-EGELVDI 182 Query: 335 RDAAKKYSVKEKL 297 R+ +++ +KL Sbjct: 183 REDVGRHNAVDKL 195
>FTCD_PIG (P53603) Formimidoyltransferase-cyclodeaminase| (Formiminotransferase-cyclodeaminase) (FTCD) [Includes: Glutamate formimidoyltransferase (EC 2.1.2.5) (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrofolate cycl Length = 541 Score = 31.6 bits (70), Expect = 2.2 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -3 Query: 554 GRRLAKEYS-RVLMRRHRARQTAESTLLRLKKEAIAALPEKLRAAAMVPDMTP 399 G+RLA+E V + AR +L L+ ALPEKL+ A PD P Sbjct: 112 GQRLAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWAPDFGP 164
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 31.6 bits (70), Expect = 2.2 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 342 KGARRCQEVFSEGETSLSSIQGRKESFSIQDAESLDAFLCSFNS 211 K + C+ GE +++S+ +ES+ + S AFL +FNS Sbjct: 337 KAIKLCEPALVSGEPTITSLGQNQESYVYRSKSSCAAFLANFNS 380
>DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC alpha)| Length = 4499 Score = 30.8 bits (68), Expect = 3.8 Identities = 21/76 (27%), Positives = 37/76 (48%) Frame = -3 Query: 551 RRLAKEYSRVLMRRHRARQTAESTLLRLKKEAIAALPEKLRAAAMVPDMTPFPANRYMAT 372 R+L ++RV + HR + T+ +++ A +++ M+ ANRYMAT Sbjct: 1287 RKLNDTWTRVEFQFHRHKDYDVHTVKMAEEDFEALEDNQVQVQGMI-------ANRYMAT 1339 Query: 371 LTPPIEGYIEKVRDAA 324 I G+ +K+ D A Sbjct: 1340 FKDEILGWQKKLNDVA 1355
>NOLX_RHISN (P55711) Nodulation protein nolX| Length = 596 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -3 Query: 491 AESTLLRLKKEAIAALPEKLRAAAMVPDMTP 399 AESTL L+K+ +A LP +RAA D TP Sbjct: 66 AESTLEDLQKDPLALLPPHMRAAIESMDQTP 96
>NOLX_RHIFR (P33213) Nodulation protein nolX| Length = 471 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -3 Query: 491 AESTLLRLKKEAIAALPEKLRAAAMVPDMTP 399 AESTL L+K+ +A LP +RAA D TP Sbjct: 66 AESTLEDLQKDPLALLPPHMRAAIESMDQTP 96
>TRPC_THEAC (Q9HK02) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 237 Score = 30.0 bits (66), Expect = 6.5 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = -3 Query: 656 DGDRVLMGPPGLDYISLGLVDEEAIPEYELTV 561 DGD V++G D +SL +++ +P+Y++T+ Sbjct: 164 DGDNVILGYNRRDLVSLKTGEDQDMPQYDITI 195
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 30.0 bits (66), Expect = 6.5 Identities = 27/77 (35%), Positives = 36/77 (46%) Frame = +1 Query: 430 RSFSGSAAMASFLSLNSVDSAV*RARCRRISTRLYSLARRRPSSTVSSYSGIASSSTRPR 609 RS+S S + + L +VD+ RAR RR S++ S RRR +VS Sbjct: 769 RSYSRSLSRSVTPPLRAVDA---RARGRRYSSQSLSPPRRRAERSVSPQRPPPG------ 819 Query: 610 LI*SRPGGPIRTRSPSP 660 RP G +RSPSP Sbjct: 820 ---RRPRGDSLSRSPSP 833
>FTCD_HUMAN (O95954) Formimidoyltransferase-cyclodeaminase| (Formiminotransferase-cyclodeaminase) (FTCD) (LCHC1) [Includes: Glutamate formimidoyltransferase (EC 2.1.2.5) (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrof Length = 541 Score = 30.0 bits (66), Expect = 6.5 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -3 Query: 554 GRRLAKEYS-RVLMRRHRARQTAESTLLRLKKEAIAALPEKLRAAAMVPDMTP 399 G+RLA+E V + AR + TL ++ ALP+KL+ A PD P Sbjct: 112 GQRLAEELDVPVYLYGEAARMDSRRTLPAIRAGEYEALPKKLQQADWAPDFGP 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,152,757 Number of Sequences: 219361 Number of extensions: 1858708 Number of successful extensions: 5278 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5093 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5274 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
