ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, comp... 38 3.3
2gb|AC110300.3| Homo sapiens BAC clone RP11-541A12 from 2, comple... 38 3.3
3gb|AC007006.3| Homo sapiens BAC clone RP11-548P6 from 2, complet... 38 3.3
4gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 38 3.3

>gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, complete sequence
          Length = 192937

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    ttgccactttaaatggcat 73
             |||||||||||||||||||
Sbjct: 26393 ttgccactttaaatggcat 26375



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>gb|AC110300.3| Homo sapiens BAC clone RP11-541A12 from 2, complete sequence
          Length = 93795

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 35   ttaaaaattaangtatatgctt 56
            ||||||||||| ||||||||||
Sbjct: 8264 ttaaaaattaaagtatatgctt 8285



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>gb|AC007006.3| Homo sapiens BAC clone RP11-548P6 from 2, complete sequence
          Length = 112027

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    gtatatgcttgccacttta 65
             |||||||||||||||||||
Sbjct: 10241 gtatatgcttgccacttta 10223



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 38.2 bits (19), Expect = 3.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 48      tatatgcttgccactttaaatgg 70
               |||||||||||| ||||||||||
Sbjct: 2622155 tatatgcttgcccctttaaatgg 2622177


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 547,358
Number of Sequences: 3902068
Number of extensions: 547358
Number of successful extensions: 33646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33630
Number of HSP's gapped (non-prelim): 16
length of query: 80
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 59
effective length of database: 17,151,101,840
effective search space: 1011915008560
effective search space used: 1011915008560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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