ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17o10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473275.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2313 Score = 204 bits (103), Expect = 2e-49 Identities = 301/367 (82%) Strand = Plus / Minus Query: 149 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagatgatgggatcccagga 208 |||| ||||||| ||||||||| |||||||||| ||||| ||| ||| | |||||||| Sbjct: 2311 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaacatgtgttcccagga 2252 Query: 209 gcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtga 268 |||||||||| |||| ||||||||||| ||||||| |||||||| || || |||| Sbjct: 2251 acagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtga 2192 Query: 269 tcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgtt 328 || |||||| |||| ||||| |||||||||| || |||||||| ||||| ||||||| Sbjct: 2191 tctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgtt 2132 Query: 329 tcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctcc 388 | | |||| | || |||| ||| | ||||| || ||||||| || ||||||||||||| Sbjct: 2131 ttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctcc 2072 Query: 389 cgtccatggcaccgtcgttggcgaccgagatgtggacagaaaataccagggactcacatg 448 ||||||||||||| ||||||| ||||||||||| |||| |||| ||| | ||| |||| Sbjct: 2071 cgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcatg 2012 Query: 449 atgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttcc 508 | || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| | Sbjct: 2011 aggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggctttc 1952 Query: 509 tactgat 515 | ||||| Sbjct: 1951 tgctgat 1945
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01, complete sequence Length = 140454 Score = 204 bits (103), Expect = 2e-49 Identities = 301/367 (82%) Strand = Plus / Plus Query: 149 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagatgatgggatcccagga 208 |||| ||||||| ||||||||| |||||||||| ||||| ||| ||| | |||||||| Sbjct: 53743 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaacatgtgttcccagga 53802 Query: 209 gcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtga 268 |||||||||| |||| ||||||||||| ||||||| |||||||| || || |||| Sbjct: 53803 acagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtga 53862 Query: 269 tcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgtt 328 || |||||| |||| ||||| |||||||||| || |||||||| ||||| ||||||| Sbjct: 53863 tctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgtt 53922 Query: 329 tcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctcc 388 | | |||| | || |||| ||| | ||||| || ||||||| || ||||||||||||| Sbjct: 53923 ttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctcc 53982 Query: 389 cgtccatggcaccgtcgttggcgaccgagatgtggacagaaaataccagggactcacatg 448 ||||||||||||| ||||||| ||||||||||| |||| |||| ||| | ||| |||| Sbjct: 53983 cgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcatg 54042 Query: 449 atgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttcc 508 | || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| | Sbjct: 54043 aggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggctttc 54102 Query: 509 tactgat 515 | ||||| Sbjct: 54103 tgctgat 54109
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 204 bits (103), Expect = 2e-49 Identities = 301/367 (82%) Strand = Plus / Plus Query: 149 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagatgatgggatcccagga 208 |||| ||||||| ||||||||| |||||||||| ||||| ||| ||| | |||||||| Sbjct: 26516856 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaacatgtgttcccagga 26516915 Query: 209 gcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtga 268 |||||||||| |||| ||||||||||| ||||||| |||||||| || || |||| Sbjct: 26516916 acagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtga 26516975 Query: 269 tcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgtt 328 || |||||| |||| ||||| |||||||||| || |||||||| ||||| ||||||| Sbjct: 26516976 tctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgtt 26517035 Query: 329 tcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctcc 388 | | |||| | || |||| ||| | ||||| || ||||||| || ||||||||||||| Sbjct: 26517036 ttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctcc 26517095 Query: 389 cgtccatggcaccgtcgttggcgaccgagatgtggacagaaaataccagggactcacatg 448 ||||||||||||| ||||||| ||||||||||| |||| |||| ||| | ||| |||| Sbjct: 26517096 cgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcatg 26517155 Query: 449 atgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttcc 508 | || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| | Sbjct: 26517156 aggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggctttc 26517215 Query: 509 tactgat 515 | ||||| Sbjct: 26517216 tgctgat 26517222
>dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N01, full insert sequence Length = 2527 Score = 204 bits (103), Expect = 2e-49 Identities = 301/367 (82%) Strand = Plus / Minus Query: 149 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagatgatgggatcccagga 208 |||| ||||||| ||||||||| |||||||||| ||||| ||| ||| | |||||||| Sbjct: 2345 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaacatgtgttcccagga 2286 Query: 209 gcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtga 268 |||||||||| |||| ||||||||||| ||||||| |||||||| || || |||| Sbjct: 2285 acagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtga 2226 Query: 269 tcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgtt 328 || |||||| |||| ||||| |||||||||| || |||||||| ||||| ||||||| Sbjct: 2225 tctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgtt 2166 Query: 329 tcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctcc 388 | | |||| | || |||| ||| | ||||| || ||||||| || ||||||||||||| Sbjct: 2165 ttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctcc 2106 Query: 389 cgtccatggcaccgtcgttggcgaccgagatgtggacagaaaataccagggactcacatg 448 ||||||||||||| ||||||| ||||||||||| |||| |||| ||| | ||| |||| Sbjct: 2105 cgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcatg 2046 Query: 449 atgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttcc 508 | || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| | Sbjct: 2045 aggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggctttc 1986 Query: 509 tactgat 515 | ||||| Sbjct: 1985 tgctgat 1979
>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete sequence Length = 40167 Score = 204 bits (103), Expect = 2e-49 Identities = 301/367 (82%) Strand = Plus / Plus Query: 149 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagatgatgggatcccagga 208 |||| ||||||| ||||||||| |||||||||| ||||| ||| ||| | |||||||| Sbjct: 15675 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaacatgtgttcccagga 15734 Query: 209 gcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtga 268 |||||||||| |||| ||||||||||| ||||||| |||||||| || || |||| Sbjct: 15735 acagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtga 15794 Query: 269 tcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgtt 328 || |||||| |||| ||||| |||||||||| || |||||||| ||||| ||||||| Sbjct: 15795 tctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgtt 15854 Query: 329 tcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctcc 388 | | |||| | || |||| ||| | ||||| || ||||||| || ||||||||||||| Sbjct: 15855 ttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctcc 15914 Query: 389 cgtccatggcaccgtcgttggcgaccgagatgtggacagaaaataccagggactcacatg 448 ||||||||||||| ||||||| ||||||||||| |||| |||| ||| | ||| |||| Sbjct: 15915 cgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcatg 15974 Query: 449 atgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttcc 508 | || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| | Sbjct: 15975 aggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggctttc 16034 Query: 509 tactgat 515 | ||||| Sbjct: 16035 tgctgat 16041
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 204 bits (103), Expect = 2e-49 Identities = 301/367 (82%) Strand = Plus / Plus Query: 149 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagatgatgggatcccagga 208 |||| ||||||| ||||||||| |||||||||| ||||| ||| ||| | |||||||| Sbjct: 157496 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaacatgtgttcccagga 157555 Query: 209 gcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtga 268 |||||||||| |||| ||||||||||| ||||||| |||||||| || || |||| Sbjct: 157556 acagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtga 157615 Query: 269 tcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgtt 328 || |||||| |||| ||||| |||||||||| || |||||||| ||||| ||||||| Sbjct: 157616 tctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgtt 157675 Query: 329 tcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctcc 388 | | |||| | || |||| ||| | ||||| || ||||||| || ||||||||||||| Sbjct: 157676 ttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctcc 157735 Query: 389 cgtccatggcaccgtcgttggcgaccgagatgtggacagaaaataccagggactcacatg 448 ||||||||||||| ||||||| ||||||||||| |||| |||| ||| | ||| |||| Sbjct: 157736 cgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcatg 157795 Query: 449 atgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttcc 508 | || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| | Sbjct: 157796 aggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggctttc 157855 Query: 509 tactgat 515 | ||||| Sbjct: 157856 tgctgat 157862
>gb|AY111407.1| Zea mays CL18707_1 mRNA sequence Length = 364 Score = 60.0 bits (30), Expect = 9e-06 Identities = 105/130 (80%) Strand = Plus / Plus Query: 232 ttggccgcgctcatatatttgcagggatccaccgtgatcgccacattttttgaactgccg 291 ||||| |||||||||| |||||||| || || || ||| ||||| | || |||||| Sbjct: 235 ttggctgcgctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgcca 294 Query: 292 gcggcagtgtagacgcgctcaaaaccaaccagctgtttcagagggaagcccggaacgctc 351 || || |||| ||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 295 gccgccgtgtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgctt 354 Query: 352 gacttcgatc 361 || ||||||| Sbjct: 355 gatttcgatc 364
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a novel gene, complete sequence Length = 72540 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 cctggtaccggtgaatgtgac 540 ||||||||||||||||||||| Sbjct: 52561 cctggtaccggtgaatgtgac 52541
>emb|AL096802.11|HSBG13C1 Human DNA sequence from clone GS1-13C1 on chromosome 1q25-31.1 Contains part of a novel gene, complete sequence Length = 75414 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 tcccaggagcagcacccttct 221 ||||||||||||||||||||| Sbjct: 16878 tcccaggagcagcacccttct 16898
>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete sequence Length = 129610 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 cctggtaccggtgaatgtgac 540 ||||||||||||||||||||| Sbjct: 90690 cctggtaccggtgaatgtgac 90670
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tcgacttcgatcttgcgaac 369 |||||||||||||||||||| Sbjct: 4135076 tcgacttcgatcttgcgaac 4135057
>emb|CR788230.7| Zebrafish DNA sequence from clone DKEY-57I11 in linkage group 2, complete sequence Length = 223248 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aatctttacaacatgacttt 73 |||||||||||||||||||| Sbjct: 99839 aatctttacaacatgacttt 99820
>gb|AC165445.1| Mus musculus BAC clone RP23-10J16 from chromosome 17, complete sequence Length = 209118 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 cctggtaccggtgaatgtga 539 |||||||||||||||||||| Sbjct: 37369 cctggtaccggtgaatgtga 37388
>gb|AF512555.1| Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) (ERCC1) gene, complete cds Length = 17285 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aatttattgctcgtgtttaa 20 |||||||||||||||||||| Sbjct: 2814 aatttattgctcgtgtttaa 2833
>gb|AC083826.7| Homo sapiens BAC clone RP11-289C17 from 4, complete sequence Length = 129240 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tatttgcagggatccaccgt 266 |||||||||||||||||||| Sbjct: 127191 tatttgcagggatccaccgt 127210
>gb|AC092168.4| Homo sapiens BAC clone RP11-784K9 from 2, complete sequence Length = 199871 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ctggtaccggtgaatgtgac 540 |||||||||||||||||||| Sbjct: 122630 ctggtaccggtgaatgtgac 122649
>gb|AC139353.3| Homo sapiens chromosome 19 clone LLNLR-257F11, complete sequence Length = 38480 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aatttattgctcgtgtttaa 20 |||||||||||||||||||| Sbjct: 17808 aatttattgctcgtgtttaa 17827
>emb|BX005131.14| Zebrafish DNA sequence from clone DKEY-195B5 in linkage group 2, complete sequence Length = 147345 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aatctttacaacatgacttt 73 |||||||||||||||||||| Sbjct: 114918 aatctttacaacatgacttt 114937
>gb|M63796.1|HUMMMDA Human DNA from cosmid MMDA from chromosome 19q13.3 (obtained by automated sequence analysis) Length = 37314 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aatttattgctcgtgtttaa 20 |||||||||||||||||||| Sbjct: 21605 aatttattgctcgtgtttaa 21586
>gb|M96635.1|LEINACETYL Leishmania mexicana N-acetylglucosamine-1-phosphate transferase gene, complete cds Length = 4593 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cgtccctccgtgtgtatgca 501 |||||||||||||||||||| Sbjct: 3430 cgtccctccgtgtgtatgca 3449 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,965,319 Number of Sequences: 3902068 Number of extensions: 3965319 Number of successful extensions: 64443 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64368 Number of HSP's gapped (non-prelim): 75 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
