Clone Information

BLAST Search Result

Clone Name	rbags17o07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY052154.1\| Triticum aestivum porphobilinogen deaminase mRNA,...	846	0.0
2	ref\|XM_464263.2\| Oryza sativa (japonica cultivar-group), mRNA	301	1e-78
3	ref\|XM_464262.1\| Oryza sativa (japonica cultivar-group), mRNA	301	1e-78
4	dbj\|AK102265.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	301	1e-78
5	dbj\|AK060914.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	301	1e-78
6	gb\|AY107718.1\| Zea mays PCO070684 mRNA sequence	293	3e-76
7	emb\|Y12809.1\|ZMY12809 Zea mays mRNA for putative porphobilinogen...	264	3e-67
8	gb\|AY105442.1\| Zea mays PCO070685 mRNA sequence	246	7e-62
9	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	244	3e-61
10	dbj\|AP005071.3\| Oryza sativa (japonica cultivar-group) genomic D...	244	3e-61
11	gb\|DQ121376.1\| Uncultured bacterium clone YC01G10, partial sequence	46	0.13
12	gb\|AC133600.2\| Mus musculus BAC clone RP24-399N24 from chromosom...	44	0.52
13	emb\|AL109964.20\|HS1118M15 Human DNA sequence from clone RP5-1118...	42	2.1
14	emb\|AL928922.7\| Mouse DNA sequence from clone RP23-431J22 on chr...	42	2.1
15	gb\|CP000109.1\| Thiomicrospira crunogena XCL-2, complete genome	40	8.1
16	gb\|AC118802.7\| Rattus norvegicus 13 BAC CH230-72B9 (Children's H...	40	8.1
17	gb\|AC163995.4\| Mus musculus chromosome 5, clone RP24-242C19, com...	40	8.1
18	gb\|AC116551.2\| Dictyostelium discoideum chromosome 2 map complem...	40	8.1
19	gb\|AC124555.4\| Mus musculus BAC clone RP23-245K17 from chromosom...	40	8.1
20	emb\|CR626884.13\| Zebrafish DNA sequence from clone DKEY-83H2 in ...	40	8.1
21	emb\|AL139347.10\| Human DNA sequence from clone RP5-871P9 on chro...	40	8.1
22	gb\|AC024935.34\| Homo sapiens 12 BAC RP11-471G7 (Roswell Park Can...	40	8.1
23	gb\|AC111280.7\| Rattus norvegicus 13 BAC CH230-51N9 (Children's H...	40	8.1
24	emb\|AL627281.1\| Salmonella enterica serovar Typhi (Salmonella ty...	40	8.1
25	emb\|AL645685.12\| Mouse DNA sequence from clone RP23-198I4 on chr...	40	8.1
26	gb\|AC134399.12\| Mus musculus chromosome 5, clone RP24-282I19, co...	40	8.1
27	gb\|AF286884.4\| Homo sapiens chromosome 8 clone RP11-597D18 map 8...	40	8.1
28	gb\|AC098964.4\| Homo sapiens chromosome 8 clone RP11-141M14 map 8...	40	8.1
29	gb\|AC103840.2\| Homo sapiens chromosome 8, clone RP11-317N12, com...	40	8.1
30	gb\|AC097521.2\| Homo sapiens BAC clone RP11-565A3 from 4, complet...	40	8.1
31	gb\|AC087671.9\| Homo sapiens chromosome 8, clone RP11-597D18, com...	40	8.1
32	emb\|BX323987.12\| Zebrafish DNA sequence from clone DKEY-125E8, c...	40	8.1
33	dbj\|AK052121.1\| Mus musculus 12 days embryo eyeball cDNA, RIKEN ...	40	8.1
34	gb\|AC019216.9\|AC019216 Homo sapiens BAC clone RP11-484N11 from 4...	40	8.1
35	gb\|AC010744.7\| Homo sapiens BAC clone RP11-548D17 from 2, comple...	40	8.1
36	gb\|AC009264.6\|AC009264 Homo sapiens chromosome 7 clone RP11-271F...	40	8.1
37	gb\|AC012486.9\| Homo sapiens BAC clone RP11-84A12 from 2, complet...	40	8.1
38	gb\|AC009332.6\|AC009332 Homo sapiens chromosome 7 clone RP11-348O...	40	8.1
39	gb\|CP000026.1\| Salmonella enterica subsp. enterica serovar Parat...	40	8.1
40	gb\|AC157891.3\| Medicago truncatula chromosome 7 BAC clone mte1-1...	40	8.1
41	gb\|AC114424.10\| Mus musculus chromosome 3, clone RP24-84L9, comp...	40	8.1
42	emb\|CR450687.16\| Zebrafish DNA sequence from clone CH211-204A13 ...	40	8.1
43	emb\|CR626935.6\| Zebrafish DNA sequence from clone CH211-81A5 in ...	40	8.1
44	gb\|AE014613.1\| Salmonella enterica subsp. enterica serovar Typhi...	40	8.1
45	gb\|AE017220.1\| Salmonella enterica subsp. enterica serovar Chole...	40	8.1
46	gb\|AE000513.1\| Deinococcus radiodurans R1 chromosome 1, complete...	40	8.1
47	emb\|AL928573.14\| Zebrafish DNA sequence from clone DKEY-11F5, co...	40	8.1

>gb|AY052154.1| Triticum aestivum porphobilinogen deaminase mRNA, partial cds
          Length = 1220

 Score =  846 bits (427), Expect = 0.0
 Identities = 549/589 (93%), Gaps = 3/589 (0%)
 Strand = Plus / Minus

                                                                        
Query: 7    ttatttcttgaaacggcaaaacatctgcaaaattacatctgattacaatgttacaacatg 66
            ||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||  
Sbjct: 1192 ttatttcctgaaacagcaaaacatctgcaaaattacatcacattacaatgttacaacaat 1133

                                                                        
Query: 67   actgcgagcagaagcctcttccagaactcgatgaaaatcaaaggataacaaaccactgaa 126
            ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1132 actgcaagcagaagcctcttccagaactcgatgaaaatcgaaggataacaaaccactaaa 1073

                                                                        
Query: 127  ccgtgttctaaattctaacccgcagcgctaaaaagacagaaatacaaatttaagtggtac 186
            ||||||||||| ||||||||||||| || ||||| ||||| |||||||||| | ||||||
Sbjct: 1072 ccgtgttctaagttctaacccgcagagccaaaaaaacagagatacaaatttgattggtac 1013

                                                                        
Query: 187  agctcaatatgtggtacaaaattctatcataactacaagaagatggtaaaaaacaaaatc 246
            |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||   ||| 
Sbjct: 1012 agctcaatatgtagtacaaacttctatcataactacgagaagatggtaaaaaa---aatg 956

                                                                        
Query: 247  aacactatcagagcgtggtggatattctattgcaagccatcgaagaaaccaggtccagcc 306
            ||| |||| || || ||| |||| | |||||| ||||||||||||||||||||||| |||
Sbjct: 955  aacgctattagggcatggcggatttcctattgtaagccatcgaagaaaccaggtccggcc 896

                                                                        
Query: 307  tttgatttcagttcgtggccggcatcttggcctatcgcgaccatgtcatcaaaagaatat 366
            ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 895  tttgatttcagttcgtggccggcgtcttgacctaacgcgaccatgtcatcaaaagaatat 836

                                                                        
Query: 367  gttccacttcttgatgtctcgtatactatagagccatctggtgaagccaatagcccccgg 426
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  gttccactccttgacgtctcgtatactatagagccatctggtgaagccaatagcccccgg 776

                                                                        
Query: 427  aatgaacagttcccatccttgtcacgataagcatatgccgcaattggagttcgacagtta 486
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 775  aatgagcagttcccatccttgtcacgataagcatatgccgcaattggagttcggcagtta 716

                                                                        
Query: 487  ccatcaagaacagacaagaattctctttcacatgcaacagctaatctggtatcttcatga 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  ccatcaagaacagacaagaattctctttcacatgcaacagctaatctggtatcttcatga 656

                                                             
Query: 547  ttcaaagaggatagatactccatcattttatcatcattgctcctgcaag 595
            ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 655  ttcaaagaggacagatactccatcattttatcatcattgctcctgcaag 607

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>ref|XM_464263.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1466

 Score =  301 bits (152), Expect = 1e-78
 Identities = 281/324 (86%)
 Strand = Plus / Minus

                                                                        
Query: 275  attgcaagccatcgaagaaaccaggtccagcctttgatttcagttcgtggccggcatctt 334
            ||||||||| ||| ||||| ||||| |||||||||| |||||| |||||||| |||||||
Sbjct: 1156 attgcaagctatcaaagaagccagggccagcctttgctttcagctcgtggccagcatctt 1097

                                                                        
Query: 335  ggcctatcgcgaccatgtcatcaaaagaatatgttccacttcttgatgtctcgtatacta 394
              || ||| | ||||||  ||| |||  ||| | |||| |||| || ||||| |||||| 
Sbjct: 1096 tacccatctcaaccatgatatcgaaatcataaggtccagttctcgaagtctcatatactg 1037

                                                                        
Query: 395  tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
            |||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| 
Sbjct: 1036 tagatccatcaggtgaagccaatagccctcggaatgaacaattcccatccttgtcacgag 977

                                                                        
Query: 455  aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
            ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 976  aagcatatgccgcaattggagttcggcagttgccatcaagaactgacaagaattctcttt 917

                                                                        
Query: 515  cacatgcaacagctaatctggtatcttcatgattcaaagaggatagatactccatcattt 574
            ||||||||||||||||||||||||||||||| ||||| ||||| |  || | ||||||| 
Sbjct: 916  cacatgcaacagctaatctggtatcttcatggttcaatgaggacaagtaattcatcattg 857

                                    
Query: 575  tatcatcattgctcctgcaagcta 598
            | |||||| |||| ||||||||||
Sbjct: 856  tgtcatcactgcttctgcaagcta 833



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 23   caaaacatctgcaaaattacatctgattacaatgttacaacatgactgcgagcagaagcc 82
            |||| ||||||||||||||||||  ||||||| |||||||||| | ||   ||| |||||
Sbjct: 1427 caaagcatctgcaaaattacatcaaattacaaagttacaacataattggccgcaaaagcc 1368

                      
Query: 83   tcttccagaa 92
            ||||||||||
Sbjct: 1367 tcttccagaa 1358

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>ref|XM_464262.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1416

 Score =  301 bits (152), Expect = 1e-78
 Identities = 281/324 (86%)
 Strand = Plus / Minus

                                                                        
Query: 275  attgcaagccatcgaagaaaccaggtccagcctttgatttcagttcgtggccggcatctt 334
            ||||||||| ||| ||||| ||||| |||||||||| |||||| |||||||| |||||||
Sbjct: 1123 attgcaagctatcaaagaagccagggccagcctttgctttcagctcgtggccagcatctt 1064

                                                                        
Query: 335  ggcctatcgcgaccatgtcatcaaaagaatatgttccacttcttgatgtctcgtatacta 394
              || ||| | ||||||  ||| |||  ||| | |||| |||| || ||||| |||||| 
Sbjct: 1063 tacccatctcaaccatgatatcgaaatcataaggtccagttctcgaagtctcatatactg 1004

                                                                        
Query: 395  tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
            |||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| 
Sbjct: 1003 tagatccatcaggtgaagccaatagccctcggaatgaacaattcccatccttgtcacgag 944

                                                                        
Query: 455  aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
            ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 943  aagcatatgccgcaattggagttcggcagttgccatcaagaactgacaagaattctcttt 884

                                                                        
Query: 515  cacatgcaacagctaatctggtatcttcatgattcaaagaggatagatactccatcattt 574
            ||||||||||||||||||||||||||||||| ||||| ||||| |  || | ||||||| 
Sbjct: 883  cacatgcaacagctaatctggtatcttcatggttcaatgaggacaagtaattcatcattg 824

                                    
Query: 575  tatcatcattgctcctgcaagcta 598
            | |||||| |||| ||||||||||
Sbjct: 823  tgtcatcactgcttctgcaagcta 800



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 23   caaaacatctgcaaaattacatctgattacaatgttacaacatgactgcgagcagaagcc 82
            |||| ||||||||||||||||||  ||||||| |||||||||| | ||   ||| |||||
Sbjct: 1394 caaagcatctgcaaaattacatcaaattacaaagttacaacataattggccgcaaaagcc 1335

                      
Query: 83   tcttccagaa 92
            ||||||||||
Sbjct: 1334 tcttccagaa 1325

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>dbj|AK102265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088M20, full
            insert sequence
          Length = 1466

 Score =  301 bits (152), Expect = 1e-78
 Identities = 281/324 (86%)
 Strand = Plus / Minus

                                                                        
Query: 275  attgcaagccatcgaagaaaccaggtccagcctttgatttcagttcgtggccggcatctt 334
            ||||||||| ||| ||||| ||||| |||||||||| |||||| |||||||| |||||||
Sbjct: 1156 attgcaagctatcaaagaagccagggccagcctttgctttcagctcgtggccagcatctt 1097

                                                                        
Query: 335  ggcctatcgcgaccatgtcatcaaaagaatatgttccacttcttgatgtctcgtatacta 394
              || ||| | ||||||  ||| |||  ||| | |||| |||| || ||||| |||||| 
Sbjct: 1096 tacccatctcaaccatgatatcgaaatcataaggtccagttctcgaagtctcatatactg 1037

                                                                        
Query: 395  tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
            |||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| 
Sbjct: 1036 tagatccatcaggtgaagccaatagccctcggaatgaacaattcccatccttgtcacgag 977

                                                                        
Query: 455  aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
            ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 976  aagcatatgccgcaattggagttcggcagttgccatcaagaactgacaagaattctcttt 917

                                                                        
Query: 515  cacatgcaacagctaatctggtatcttcatgattcaaagaggatagatactccatcattt 574
            ||||||||||||||||||||||||||||||| ||||| ||||| |  || | ||||||| 
Sbjct: 916  cacatgcaacagctaatctggtatcttcatggttcaatgaggacaagtaattcatcattg 857

                                    
Query: 575  tatcatcattgctcctgcaagcta 598
            | |||||| |||| ||||||||||
Sbjct: 856  tgtcatcactgcttctgcaagcta 833



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 23   caaaacatctgcaaaattacatctgattacaatgttacaacat 65
            |||| ||||||||||||||||||  ||||||| ||||||||||
Sbjct: 1427 caaagcatctgcaaaattacatcaaattacaaagttacaacat 1385

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>dbj|AK060914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G03, full
            insert sequence
          Length = 1416

 Score =  301 bits (152), Expect = 1e-78
 Identities = 281/324 (86%)
 Strand = Plus / Minus

                                                                        
Query: 275  attgcaagccatcgaagaaaccaggtccagcctttgatttcagttcgtggccggcatctt 334
            ||||||||| ||| ||||| ||||| |||||||||| |||||| |||||||| |||||||
Sbjct: 1123 attgcaagctatcaaagaagccagggccagcctttgctttcagctcgtggccagcatctt 1064

                                                                        
Query: 335  ggcctatcgcgaccatgtcatcaaaagaatatgttccacttcttgatgtctcgtatacta 394
              || ||| | ||||||  ||| |||  ||| | |||| |||| || ||||| |||||| 
Sbjct: 1063 tacccatctcaaccatgatatcgaaatcataaggtccagttctcgaagtctcatatactg 1004

                                                                        
Query: 395  tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
            |||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| 
Sbjct: 1003 tagatccatcaggtgaagccaatagccctcggaatgaacaattcccatccttgtcacgag 944

                                                                        
Query: 455  aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
            ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 943  aagcatatgccgcaattggagttcggcagttgccatcaagaactgacaagaattctcttt 884

                                                                        
Query: 515  cacatgcaacagctaatctggtatcttcatgattcaaagaggatagatactccatcattt 574
            ||||||||||||||||||||||||||||||| ||||| ||||| |  || | ||||||| 
Sbjct: 883  cacatgcaacagctaatctggtatcttcatggttcaatgaggacaagtaattcatcattg 824

                                    
Query: 575  tatcatcattgctcctgcaagcta 598
            | |||||| |||| ||||||||||
Sbjct: 823  tgtcatcactgcttctgcaagcta 800



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 23   caaaacatctgcaaaattacatctgattacaatgttacaacatgactgcgagcagaagcc 82
            |||| ||||||||||||||||||  ||||||| |||||||||| | ||   ||| |||||
Sbjct: 1394 caaagcatctgcaaaattacatcaaattacaaagttacaacataattggccgcaaaagcc 1335

                      
Query: 83   tcttccagaa 92
            ||||||||||
Sbjct: 1334 tcttccagaa 1325

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>gb|AY107718.1| Zea mays PCO070684 mRNA sequence
          Length = 1003

 Score =  293 bits (148), Expect = 3e-76
 Identities = 280/324 (86%)
 Strand = Plus / Minus

                                                                       
Query: 275 attgcaagccatcgaagaaaccaggtccagcctttgatttcagttcgtggccggcatctt 334
           ||||||||| ||| ||||| ||||| ||||||||||  ||||| || || || |||||||
Sbjct: 728 attgcaagctatcaaagaatccaggcccagcctttgccttcagctcatgaccagcatctt 669

                                                                       
Query: 335 ggcctatcgcgaccatgtcatcaaaagaatatgttccacttcttgatgtctcgtatacta 394
            ||| ||| | |||||||| |||||||| || | ||||||||||| ||||||  ||||| 
Sbjct: 668 tgcccatctcaaccatgtcgtcaaaagagtacggtccacttcttgttgtctcaaatactt 609

                                                                       
Query: 395 tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
           |||| |||||||| |||| |||||| || |||||||| || |||||||| |||||||| |
Sbjct: 608 tagatccatctggggaagacaatagaccgcggaatgagcaattcccatcattgtcacggt 549

                                                                       
Query: 455 aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
           ||||||| || |||||||||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct: 548 aagcataggctgcaattggagttcggcagttaccatcaagaactgccaaaaattctcttt 489

                                                                       
Query: 515 cacatgcaacagctaatctggtatcttcatgattcaaagaggatagatactccatcattt 574
           ||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||
Sbjct: 488 cacatgcaacagctaatctggtatcttcatggttcaacgctgatagatactccatcattt 429

                                   
Query: 575 tatcatcattgctcctgcaagcta 598
           | ||||||||||| | ||||||||
Sbjct: 428 tgtcatcattgcttcggcaagcta 405

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>emb|Y12809.1|ZMY12809 Zea mays mRNA for putative porphobilinogen deaminase
          Length = 865

 Score =  264 bits (133), Expect = 3e-67
 Identities = 269/313 (85%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 275 attgcaagccatcgaagaaaccaggtccagcctttgatttcagttcgtggccggcatctt 334
           ||||| ||| ||| ||||| ||||| ||||||||||  |||||||| || || |||||||
Sbjct: 227 attgcgagctatcaaagaatccaggcccagcctttgccttcagttcatgaccagcatctt 286

                                                                       
Query: 335 ggcctatcgcgaccatgtcatcaaaagaatatgttccacttcttgatgtctcgtatacta 394
            ||| ||| | |||||||| |||||||| || | ||||||||| | ||||||  ||||| 
Sbjct: 287 tgcccatctcaaccatgtcgtcaaaagagtacggtccacttctcgttgtctcaaatactt 346

                                                                       
Query: 395 tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
           |||| |||||||| |||| |||||| || |||||||| || |||||||| |||||||| |
Sbjct: 347 tagatccatctggggaagacaatagaccgcggaatgagcaattcccatcattgtcacggt 406

                                                                       
Query: 455 aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
           ||||||| || |||||||||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct: 407 aagcataggctgcaattggagttcggcagttaccatcaagaactgccaa-aattctcttt 465

                                                                       
Query: 515 cacatgcaacagctaatctggtatcttcatgattcaaagaggatagatactccatcattt 574
           ||||||||||||||||| ||||||||||||| ||||| |  |||||||||||||||||||
Sbjct: 466 cacatgcaacagctaatgtggtatcttcatggttcaacgctgatagatactccatcattt 525

                        
Query: 575 tatcatcattgct 587
           | |||||||||||
Sbjct: 526 tgtcatcattgct 538

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>gb|AY105442.1| Zea mays PCO070685 mRNA sequence
          Length = 1591

 Score =  246 bits (124), Expect = 7e-62
 Identities = 265/312 (84%)
 Strand = Plus / Minus

                                                                        
Query: 285  atcgaagaaaccaggtccagcctttgatttcagttcgtggccggcatcttggcctatcgc 344
            ||||||||| ||||| |||||||| |  ||||| |||||||| || |||| ||| ||| |
Sbjct: 1173 atcgaagaagccaggcccagccttcgccttcagctcgtggccagcgtctttgcccatctc 1114

                                                                        
Query: 345  gaccatgtcatcaaaagaatatgttccacttcttgatgtctcgtatactatagagccatc 404
            ||||||||| || ||||| || | |||||||||||  |||||  ||||| |||| || ||
Sbjct: 1113 gaccatgtcgtcgaaagagtacggtccacttcttgccgtctcaaatactttagatccgtc 1054

                                                                        
Query: 405  tggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgataagcatatgc 464
            |||||||| || ||| ||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct: 1053 tggtgaagacagtaggccccggaatgagcagttcccgtccttgtcacggtaagcataggc 994

                                                                        
Query: 465  cgcaattggagttcgacagttaccatcaagaacagacaagaattctctttcacatgcaac 524
            ||||||||||||||| ||||| ||||||||||| | ||||||||||||||| ||||  ||
Sbjct: 993  cgcaattggagttcggcagttgccatcaagaactgccaagaattctctttcgcatgtgac 934

                                                                        
Query: 525  agctaatctggtatcttcatgattcaaagaggatagatactccatcattttatcatcatt 584
            ||||| ||||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 933  agctagtctggtatcctcgtggttcaacgaggacagatactccatcattttgtcatcgtt 874

                        
Query: 585  gctcctgcaagc 596
            ||| | ||||||
Sbjct: 873  gcttcggcaagc 862

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  244 bits (123), Expect = 3e-61
 Identities = 153/163 (93%)
 Strand = Plus / Minus

                                                                           
Query: 395     tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
               |||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| 
Sbjct: 3717726 tagatccatcaggtgaagccaatagccctcggaatgaacaattcccatccttgtcacgag 3717667

                                                                           
Query: 455     aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
               ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 3717666 aagcatatgccgcaattggagttcggcagttgccatcaagaactgacaagaattctcttt 3717607

                                                          
Query: 515     cacatgcaacagctaatctggtatcttcatgattcaaagagga 557
               ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 3717606 cacatgcaacagctaatctggtatcttcatggttcaatgagga 3717564



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                           
Query: 23      caaaacatctgcaaaattacatctgattacaatgttacaacatgactgcgagcagaagcc 82
               |||| ||||||||||||||||||  ||||||| |||||||||| | ||   ||| |||||
Sbjct: 3718220 caaagcatctgcaaaattacatcaaattacaaagttacaacataattggccgcaaaagcc 3718161

                         
Query: 83      tcttccagaa 92
               ||||||||||
Sbjct: 3718160 tcttccagaa 3718151

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>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G09
          Length = 140067

 Score =  244 bits (123), Expect = 3e-61
 Identities = 153/163 (93%)
 Strand = Plus / Minus

                                                                         
Query: 395   tagagccatctggtgaagccaatagcccccggaatgaacagttcccatccttgtcacgat 454
             |||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| 
Sbjct: 58043 tagatccatcaggtgaagccaatagccctcggaatgaacaattcccatccttgtcacgag 57984

                                                                         
Query: 455   aagcatatgccgcaattggagttcgacagttaccatcaagaacagacaagaattctcttt 514
             ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 57983 aagcatatgccgcaattggagttcggcagttgccatcaagaactgacaagaattctcttt 57924

                                                        
Query: 515   cacatgcaacagctaatctggtatcttcatgattcaaagagga 557
             ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 57923 cacatgcaacagctaatctggtatcttcatggttcaatgagga 57881



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 23    caaaacatctgcaaaattacatctgattacaatgttacaacatgactgcgagcagaagcc 82
             |||| ||||||||||||||||||  ||||||| |||||||||| | ||   ||| |||||
Sbjct: 58537 caaagcatctgcaaaattacatcaaattacaaagttacaacataattggccgcaaaagcc 58478

                       
Query: 83    tcttccagaa 92
             ||||||||||
Sbjct: 58477 tcttccagaa 58468

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>gb|DQ121376.1| Uncultured bacterium clone YC01G10, partial sequence
          Length = 44241

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 228  gatggtaaaaaacaaaatcaacactat 254
            |||||||||||||||||||| ||||||
Sbjct: 3684 gatggtaaaaaacaaaatcatcactat 3658

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>gb|AC133600.2| Mus musculus BAC clone RP24-399N24 from chromosome 3, complete sequence
          Length = 197428

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 234   aaaaaacaaaatcaacactatc 255
             ||||||||||||||||||||||
Sbjct: 61952 aaaaaacaaaatcaacactatc 61973

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>emb|AL109964.20|HS1118M15 Human DNA sequence from clone RP5-1118M15 on chromosome 20 Contains the
             3' end of the CTNNBL1 gene for catenin beta like 1, the
             C20orf102 gene for a novel Immunoglobulin
             domain-containing protein and a CpG Island, complete
             sequence
          Length = 95851

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 425   ggaatgaacagttcccatccttgtcacga 453
             |||||||||||| ||||||||||||||||
Sbjct: 25486 ggaatgaacagt-cccatccttgtcacga 25513

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>emb|AL928922.7| Mouse DNA sequence from clone RP23-431J22 on chromosome 2, complete
            sequence
          Length = 203047

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 163  cagaaatacaaatttaagtggtaca 187
            ||||||||| |||||||||||||||
Sbjct: 3715 cagaaataccaatttaagtggtaca 3739

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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     ggtaaaaaacaaaatcaaca 250
               ||||||||||||||||||||
Sbjct: 1012548 ggtaaaaaacaaaatcaaca 1012529

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>gb|AC118802.7| Rattus norvegicus 13 BAC CH230-72B9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 239935

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    agaaatacaaatttaagtgg 183
              ||||||||||||||||||||
Sbjct: 147813 agaaatacaaatttaagtgg 147794

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>gb|AC163995.4| Mus musculus chromosome 5, clone RP24-242C19, complete sequence
          Length = 177877

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     cagaagcctcttccagaact 94
              ||||||||||||||||||||
Sbjct: 117359 cagaagcctcttccagaact 117340

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>gb|AC116551.2| Dictyostelium discoideum chromosome 2 map complement(581327-427576)
             strain AX4, complete sequence
          Length = 153751

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   taaaaaacaaaatcaacact 252
             ||||||||||||||||||||
Sbjct: 98060 taaaaaacaaaatcaacact 98041

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>gb|AC124555.4| Mus musculus BAC clone RP23-245K17 from chromosome 14, complete sequence
          Length = 210174

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    taaaaaacaaaatcaacact 252
              ||||||||||||||||||||
Sbjct: 153733 taaaaaacaaaatcaacact 153752

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>emb|CR626884.13| Zebrafish DNA sequence from clone DKEY-83H2 in linkage group 15,
             complete sequence
          Length = 207732

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   ccatcaagaacagacaagaa 506
             ||||||||||||||||||||
Sbjct: 81805 ccatcaagaacagacaagaa 81824

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>emb|AL139347.10| Human DNA sequence from clone RP5-871P9 on chromosome 1p21.2-22.1
             Contains a NADH dehydrogenase (ubiquinone) Fe-S protein 5
             (15kDa (NADH-coenzyme Q reductase) (NDUFS5)) pseudogene,
             complete sequence
          Length = 74010

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 387   gtatactatagagccatctggtga 410
             ||||||| ||||||||||||||||
Sbjct: 16553 gtatactctagagccatctggtga 16576

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>gb|AC024935.34| Homo sapiens 12 BAC RP11-471G7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 102102

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    agaagcctcttccagaactc 95
             ||||||||||||||||||||
Sbjct: 50963 agaagcctcttccagaactc 50944

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>gb|AC111280.7| Rattus norvegicus 13 BAC CH230-51N9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216192

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   agaaatacaaatttaagtgg 183
             ||||||||||||||||||||
Sbjct: 34425 agaaatacaaatttaagtgg 34406

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>emb|AL627281.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 17/20
          Length = 265050

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ggcaaaacatctgcaaaatt 40
              ||||||||||||||||||||
Sbjct: 230483 ggcaaaacatctgcaaaatt 230464

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>emb|AL645685.12| Mouse DNA sequence from clone RP23-198I4 on chromosome 1 Contains a
              ribosomal protein S13 (Rps13) pseudogene, a ribosomal
              protein S27 (Rps27) pseudogene a novel genes and the 3' end
              of a novel gene, complete sequence
          Length = 218950

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 388    tatactatagagccatctggtgaa 411
              ||||||||||||||| ||||||||
Sbjct: 150493 tatactatagagccaactggtgaa 150470

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>gb|AC134399.12| Mus musculus chromosome 5, clone RP24-282I19, complete sequence
          Length = 155228

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    cagaagcctcttccagaact 94
             ||||||||||||||||||||
Sbjct: 78013 cagaagcctcttccagaact 78032

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>gb|AF286884.4| Homo sapiens chromosome 8 clone RP11-597D18 map 8p21-p11, complete
            sequence
          Length = 207519

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  atggtaaaaaacaaaatcaa 248
            ||||||||||||||||||||
Sbjct: 1183 atggtaaaaaacaaaatcaa 1202

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>gb|AC098964.4| Homo sapiens chromosome 8 clone RP11-141M14 map 8p21-p11, complete
              sequence
          Length = 151646

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    atggtaaaaaacaaaatcaa 248
              ||||||||||||||||||||
Sbjct: 116109 atggtaaaaaacaaaatcaa 116128

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>gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, complete sequence
          Length = 172361

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   atggtaaaaaacaaaatcaa 248
             ||||||||||||||||||||
Sbjct: 58701 atggtaaaaaacaaaatcaa 58720

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>gb|AC097521.2| Homo sapiens BAC clone RP11-565A3 from 4, complete sequence
          Length = 184729

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     catctgcaaaattacatctg 47
              ||||||||||||||||||||
Sbjct: 104310 catctgcaaaattacatctg 104291

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>gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, complete sequence
          Length = 207503

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    atggtaaaaaacaaaatcaa 248
              ||||||||||||||||||||
Sbjct: 206320 atggtaaaaaacaaaatcaa 206301

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>emb|BX323987.12| Zebrafish DNA sequence from clone DKEY-125E8, complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   aaaacaaaatcaacactatc 255
             ||||||||||||||||||||
Sbjct: 94041 aaaacaaaatcaacactatc 94060

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>dbj|AK052121.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230048G05
           product:unclassifiable, full insert sequence
          Length = 2835

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 564 ctccatcattttatcatcat 583
           ||||||||||||||||||||
Sbjct: 81  ctccatcattttatcatcat 62

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>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence
          Length = 160858

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    aaagacagaaatacaaattt 177
              ||||||||||||||||||||
Sbjct: 119341 aaagacagaaatacaaattt 119360

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>gb|AC010744.7| Homo sapiens BAC clone RP11-548D17 from 2, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    atgaaaatcaaaggataaca 116
             ||||||||||||||||||||
Sbjct: 51611 atgaaaatcaaaggataaca 51630

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>gb|AC009264.6|AC009264 Homo sapiens chromosome 7 clone RP11-271F4, complete sequence
          Length = 164824

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 159    aagacagaaatacaaatttaagtg 182
              ||||||||||||||||| ||||||
Sbjct: 107374 aagacagaaatacaaatgtaagtg 107351

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>gb|AC012486.9| Homo sapiens BAC clone RP11-84A12 from 2, complete sequence
          Length = 170220

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   gctaaaaagacagaaatacaaatt 176
             |||||||||| |||||||||||||
Sbjct: 47894 gctaaaaagaaagaaatacaaatt 47917

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>gb|AC009332.6|AC009332 Homo sapiens chromosome 7 clone RP11-348O21, complete sequence
          Length = 148471

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 159    aagacagaaatacaaatttaagtg 182
              ||||||||||||||||| ||||||
Sbjct: 130044 aagacagaaatacaaatgtaagtg 130021

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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ggcaaaacatctgcaaaatt 40
               ||||||||||||||||||||
Sbjct: 3432454 ggcaaaacatctgcaaaatt 3432473

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>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
          Length = 154095

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   aaacaaaatcaacactatcagagc 260
             |||||||||||||||| |||||||
Sbjct: 77959 aaacaaaatcaacactctcagagc 77982

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>gb|AC114424.10| Mus musculus chromosome 3, clone RP24-84L9, complete sequence
          Length = 220500

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 564    ctccatcattttatcatcat 583
              ||||||||||||||||||||
Sbjct: 157695 ctccatcattttatcatcat 157714

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>emb|CR450687.16| Zebrafish DNA sequence from clone CH211-204A13 in linkage group 19,
            complete sequence
          Length = 143150

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  gacagaaatacaaatttaag 180
            ||||||||||||||||||||
Sbjct: 3032 gacagaaatacaaatttaag 3013

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>emb|CR626935.6| Zebrafish DNA sequence from clone CH211-81A5 in linkage group 19,
             complete sequence
          Length = 166134

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    attacaatgttacaacatga 67
             ||||||||||||||||||||
Sbjct: 86959 attacaatgttacaacatga 86940

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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 21      ggcaaaacatctgcaaaatt 40
               ||||||||||||||||||||
Sbjct: 4188130 ggcaaaacatctgcaaaatt 4188111

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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ggcaaaacatctgcaaaatt 40
               ||||||||||||||||||||
Sbjct: 3580503 ggcaaaacatctgcaaaatt 3580522

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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      cttccagaactcgatgaaaa 103
               ||||||||||||||||||||
Sbjct: 2170784 cttccagaactcgatgaaaa 2170765

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>emb|AL928573.14| Zebrafish DNA sequence from clone DKEY-11F5, complete sequence
          Length = 244471

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     gatgaaaatcaaaggataacaaac 119
              |||||||||||||| |||||||||
Sbjct: 216091 gatgaaaatcaaagcataacaaac 216114


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,776,381
Number of Sequences: 3902068
Number of extensions: 6776381
Number of successful extensions: 133643
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 133391
Number of HSP's gapped (non-prelim): 246
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result