ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags18d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB164680.1| Hordeum vulgare HVD1 mRNA for ATP-dependent RNA ... 1322 0.0
2ref|NM_185120.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.003
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.003
4gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom... 52 0.003
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
6dbj|AK065849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
7dbj|AK062046.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
8gb|AY105041.1| Zea mays PCO121445 mRNA sequence 48 0.039
9emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.61
10emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.61
11gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cance... 44 0.61
12dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 44 0.61
13emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on ch... 42 2.4
14emb|AL133385.8| Human DNA sequence from clone RP1-81E11 on chrom... 42 2.4
15ref|XM_715237.1| Candida albicans SC5314 hypothetical protein (Y... 40 9.6
16ref|XM_883617.1| Candida albicans SC5314 hypothetical protein (C... 40 9.6
17gb|AC078791.8| Homo sapiens BAC clone RP11-211J15 from 7, comple... 40 9.6
18gb|AC093649.4| Homo sapiens BAC clone RP11-360A17 from 7, comple... 40 9.6
19gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, compl... 40 9.6
20emb|AL512272.15| Human DNA sequence from clone RP11-310M21 on ch... 40 9.6
21gb|AE012109.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 9.6
22gb|AC090448.5| Homo sapiens chromosome 8, clone RP11-142M8, comp... 40 9.6
23gb|AC012213.8| Homo sapiens chromosome , clone RP11-1C8, complet... 40 9.6
24gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 9.6
25gb|AC012509.13| Homo sapiens BAC clone RP11-532A9 from 2, comple... 40 9.6
26gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3... 40 9.6
27gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Canc... 40 9.6
28emb|AJ390499.1|CAL390499 Candida albicans yae1 gene for essentia... 40 9.6
29gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, comple... 40 9.6
30dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 9.6
31dbj|AP004288.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.6 
>dbj|AB164680.1| Hordeum vulgare HVD1 mRNA for ATP-dependent RNA helicase, complete
            cds
          Length = 2799

 Score = 1322 bits (667), Expect = 0.0
 Identities = 690/699 (98%), Gaps = 1/699 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    cgtgtaacagttctgaatgctttcttggttctatagaactttacagggncccatgtagta 61
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2771 cgtgtaacagttctgaatgctttcttggttctatagaactttacaggg-cccatgtagta 2713

                                                                        
Query: 62   gtagctgttgttaacattctatcaccaactccgacaagcggcaaaccnnnnnnnnttaaa 121
            |||||||||||||||||||||||||||||||||||||||||||||||        |||||
Sbjct: 2712 gtagctgttgttaacattctatcaccaactccgacaagcggcaaaccaaaaaaaattaaa 2653

                                                                        
Query: 122  acaagcaacgttcctgtaaaacccctagatattacacgaataattcagcggaaggccagg 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2652 acaagcaacgttcctgtaaaacccctagatattacacgaataattcagcggaaggccagg 2593

                                                                        
Query: 182  ctctccttcggcgtgtcagcagcgtgccagaaaaatcatctcctctgtgaaacgacgacc 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2592 ctctccttcggcgtgtcagcagcgtgccagaaaaatcatctcctctgtgaaacgacgacc 2533

                                                                        
Query: 242  acacaaaactgtagtagtatctagcacagccagccgttcatcgggcatatgcagatcaca 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 acacaaaactgtagtagtatctagcacagccagccgttcatcgggcatatgcagatcaca 2473

                                                                        
Query: 302  gatcgacacacaagggaggccggccttgcgatgttccttggcgttgtgttcagctttgtc 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 gatcgacacacaagggaggccggccttgcgatgttccttggcgttgtgttcagctttgtc 2413

                                                                        
Query: 362  cagccgcttgtcggaagctgatgaggcccgaacggagcagcgcggcaggcaagcagcact 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 cagccgcttgtcggaagctgatgaggcccgaacggagcagcgcggcaggcaagcagcact 2353

                                                                        
Query: 422  tcgtatgcgccgtctacttgttcgggcagtctgatgctctgtgccctgattgcccgcatg 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352 tcgtatgcgccgtctacttgttcgggcagtctgatgctctgtgccctgattgcccgcatg 2293

                                                                        
Query: 482  tgaagcacgcgccactgaagcttctgtccctgctgccaaaggacgagccaccgcgaccac 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 tgaagcacgcgccactgaagcttctgtccctgctgccaaaggacgagccaccgcgaccac 2233

                                                                        
Query: 542  cgtatgacgatgagcgttcaccaaaggaggaggatctgtcaccgaaggatgacgagccac 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 cgtatgacgatgagcgttcaccaaaggaggaggatctgtcaccgaaggatgacgagccac 2173

                                                                        
Query: 602  cacgcccaccataggacgagcggccaccgctgggggatgacgaacggtttgatcttctcg 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 cacgcccaccataggacgagcggccaccgctgggggatgacgaacggtttgatcttctcg 2113

                                                   
Query: 662  caccaccacctgaaaagtcatcatctgaccaaatgtcgt 700
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 caccaccacctgaaaagtcatcatctgaccaaatgtcgt 2074
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>ref|NM_185120.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2719

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 434  tctacttgttcgggcagtctgatgctctgtgccc 467
            |||||||||| |||||||||||||||| ||||||
Sbjct: 2278 tctacttgtttgggcagtctgatgctcggtgccc 2245



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 49/58 (84%), Gaps = 6/58 (10%)
 Strand = Plus / Minus

                                                                      
Query: 636  ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 693
            ||||||||||||||| ||||||||| | |||||      |||||||||||||||||||
Sbjct: 2118 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaa 2067
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 434      tctacttgttcgggcagtctgatgctctgtgccc 467
                |||||||||| |||||||||||||||| ||||||
Sbjct: 34467969 tctacttgtttgggcagtctgatgctcggtgccc 34467936



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 49/58 (84%), Gaps = 6/58 (10%)
 Strand = Plus / Minus

                                                                          
Query: 636      ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 693
                ||||||||||||||| ||||||||| | |||||      |||||||||||||||||||
Sbjct: 34467392 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaa 34467341
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>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete
             sequence
          Length = 117505

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 434   tctacttgttcgggcagtctgatgctctgtgccc 467
             |||||||||| |||||||||||||||| ||||||
Sbjct: 58198 tctacttgtttgggcagtctgatgctcggtgccc 58231



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 49/58 (84%), Gaps = 6/58 (10%)
 Strand = Plus / Plus

                                                                       
Query: 636   ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 693
             ||||||||||||||| ||||||||| | |||||      |||||||||||||||||||
Sbjct: 58775 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaa 58826
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 434      tctacttgttcgggcagtctgatgctctgtgccc 467
                |||||||||| |||||||||||||||| ||||||
Sbjct: 34558041 tctacttgtttgggcagtctgatgctcggtgccc 34558008



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 49/58 (84%), Gaps = 6/58 (10%)
 Strand = Plus / Minus

                                                                          
Query: 636      ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 693
                ||||||||||||||| ||||||||| | |||||      |||||||||||||||||||
Sbjct: 34557464 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaa 34557413
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>dbj|AK065849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043E01, full
            insert sequence
          Length = 2728

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 434  tctacttgttcgggcagtctgatgctctgtgccc 467
            |||||||||| |||||||||||||||| ||||||
Sbjct: 2301 tctacttgtttgggcagtctgatgctcggtgccc 2268



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 49/58 (84%), Gaps = 6/58 (10%)
 Strand = Plus / Minus

                                                                      
Query: 636  ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 693
            ||||||||||||||| ||||||||| | |||||      |||||||||||||||||||
Sbjct: 2141 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaa 2090
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>dbj|AK062046.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A10, full
            insert sequence
          Length = 1728

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 434  tctacttgttcgggcagtctgatgctctgtgccc 467
            |||||||||| |||||||||||||||| ||||||
Sbjct: 1299 tctacttgtttgggcagtctgatgctcggtgccc 1266



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 49/58 (84%), Gaps = 6/58 (10%)
 Strand = Plus / Minus

                                                                      
Query: 636  ggatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaa 693
            ||||||||||||||| ||||||||| | |||||      |||||||||||||||||||
Sbjct: 1139 ggatgacgaacggttcgatcttctcccgccacc------aaagtcatcatctgaccaa 1088
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>gb|AY105041.1| Zea mays PCO121445 mRNA sequence
          Length = 1788

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 53/62 (85%), Gaps = 3/62 (4%)
 Strand = Plus / Minus

                                                                        
Query: 637  gatgacgaacggtttgatcttctcgcaccaccacctgaaaagtcatcatctgaccaaatg 696
            ||||| |||||||||||| |||||   ||||| |||||  ||||||||||||||||| ||
Sbjct: 1444 gatgaggaacggtttgattttctc---ccaccgcctgaccagtcatcatctgaccaactg 1388

              
Query: 697  tc 698
            ||
Sbjct: 1387 tc 1386
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 574    gatctgtcaccgaaggatgacg 595
              ||||||||||||||||||||||
Sbjct: 164161 gatctgtcaccgaaggatgacg 164182
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 574   gatctgtcaccgaaggatgacg 595
             ||||||||||||||||||||||
Sbjct: 13913 gatctgtcaccgaaggatgacg 13892
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>gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 248275

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 445    gggcagtctgatgctctgtgcc 466
              ||||||||||||||||||||||
Sbjct: 187396 gggcagtctgatgctctgtgcc 187375
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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 666   accacctgaaaagtcatcatct 687
             ||||||||||||||||||||||
Sbjct: 43850 accacctgaaaagtcatcatct 43871
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>emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on chromosome 6 Contains the
             THBS2 gene for thrombospondin 2, two novel genes, a
             chromosome 6 open reading frame 55 (C6orf55) pseudogene
             and two CpG islands, complete sequence
          Length = 159175

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 307   acacacaagggaggccggccttgcg 331
             |||||||||| ||||||||||||||
Sbjct: 43616 acacacaaggaaggccggccttgcg 43640
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>emb|AL133385.8| Human DNA sequence from clone RP1-81E11 on chromosome X, complete
             sequence
          Length = 45848

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 57    tagtagtagctgttgttaacattct 81
             ||||||||| |||||||||||||||
Sbjct: 12839 tagtagtagttgttgttaacattct 12815
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>ref|XM_715237.1| Candida albicans SC5314 hypothetical protein (YAE1) partial mRNA
          Length = 543

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 679 tcatcatctgaccaaatgtc 698
           ||||||||||||||||||||
Sbjct: 152 tcatcatctgaccaaatgtc 133
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>ref|XM_883617.1| Candida albicans SC5314 hypothetical protein (CaJ7.0095) partial
           mRNA
          Length = 543

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 679 tcatcatctgaccaaatgtc 698
           ||||||||||||||||||||
Sbjct: 152 tcatcatctgaccaaatgtc 133
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>gb|AC078791.8| Homo sapiens BAC clone RP11-211J15 from 7, complete sequence
          Length = 83898

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aaaatcatctcctctgtgaa 232
           ||||||||||||||||||||
Sbjct: 256 aaaatcatctcctctgtgaa 275
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>gb|AC093649.4| Homo sapiens BAC clone RP11-360A17 from 7, complete sequence
          Length = 16811

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aaaatcatctcctctgtgaa 232
             ||||||||||||||||||||
Sbjct: 15067 aaaatcatctcctctgtgaa 15086
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>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence
          Length = 240699

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  aaaatcatctcctctgtgaa 232
            ||||||||||||||||||||
Sbjct: 1211 aaaatcatctcctctgtgaa 1230
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>emb|AL512272.15| Human DNA sequence from clone RP11-310M21 on chromosome 10, complete
             sequence
          Length = 127651

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 244   acaaaactgtagtagtatctagcacagc 271
             ||||||||||||||||| | ||||||||
Sbjct: 97915 acaaaactgtagtagtaacaagcacagc 97942
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>gb|AE012109.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 17 of
             460 of the complete genome
          Length = 11866

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 406   gcaggcaagcagcacttcgtatgcgccg 433
             |||||||||||||||||| || ||||||
Sbjct: 11578 gcaggcaagcagcacttcatacgcgccg 11551
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>gb|AC090448.5| Homo sapiens chromosome 8, clone RP11-142M8, complete sequence
          Length = 82020

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   gagccaccacgcccaccata 614
             ||||||||||||||||||||
Sbjct: 24270 gagccaccacgcccaccata 24289
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>gb|AC012213.8| Homo sapiens chromosome , clone RP11-1C8, complete sequence
          Length = 176922

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   gagccaccacgcccaccata 614
             ||||||||||||||||||||
Sbjct: 25672 gagccaccacgcccaccata 25653
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 406    gcaggcaagcagcacttcgtatgcgccg 433
              |||||||||||||||||| || ||||||
Sbjct: 187010 gcaggcaagcagcacttcatacgcgccg 186983
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>gb|AC012509.13| Homo sapiens BAC clone RP11-532A9 from 2, complete sequence
          Length = 209877

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    gtagtagtagctgttgttaacatt 79
             ||||||||||||||||||| ||||
Sbjct: 45424 gtagtagtagctgttgttatcatt 45401
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>gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3p, complete sequence
          Length = 201414

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    agctgttgttaacattctat 83
             ||||||||||||||||||||
Sbjct: 73822 agctgttgttaacattctat 73841
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>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 205164

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   ccttggcgttgtgttcagct 356
             ||||||||||||||||||||
Sbjct: 59922 ccttggcgttgtgttcagct 59903
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>emb|AJ390499.1|CAL390499 Candida albicans yae1 gene for essential YAE1 protein
          Length = 543

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 679 tcatcatctgaccaaatgtc 698
           ||||||||||||||||||||
Sbjct: 152 tcatcatctgaccaaatgtc 133
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>gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, complete sequence
          Length = 179231

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  ccttggcgttgtgttcagct 356
            ||||||||||||||||||||
Sbjct: 4831 ccttggcgttgtgttcagct 4850
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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 679    tcatcatctgaccaaatgtc 698
              ||||||||||||||||||||
Sbjct: 153738 tcatcatctgaccaaatgtc 153757
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>dbj|AP004288.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1735D4
          Length = 212373

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   gagccaccacgcccaccata 614
             ||||||||||||||||||||
Sbjct: 86676 gagccaccacgcccaccata 86695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,207,002
Number of Sequences: 3902068
Number of extensions: 5207002
Number of successful extensions: 129242
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 129051
Number of HSP's gapped (non-prelim): 190
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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